Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS15460 and DDA3937_RS15465 are separated by 152 nucleotides DDA3937_RS15465 and DDA3937_RS15470 are separated by 36 nucleotides
DDA3937_RS15460: DDA3937_RS15460 - histidine--tRNA ligase, at 3,543,909 to 3,545,183
_RS15460
DDA3937_RS15465: DDA3937_RS15465 - flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase, at 3,545,336 to 3,546,457
_RS15465
DDA3937_RS15470: DDA3937_RS15470 - cytoskeleton protein RodZ, at 3,546,494 to 3,547,495
_RS15470
Position (kb)
3545
3546
3547 Strain fitness (log2 ratio)
-2
-1
0
1 at 3545.242 kb on - strand at 3545.242 kb on - strand at 3545.242 kb on - strand at 3545.242 kb on - strand at 3545.242 kb on - strand at 3545.341 kb on + strand at 3545.342 kb on - strand at 3545.351 kb on - strand at 3545.351 kb on - strand at 3545.351 kb on - strand at 3546.512 kb on - strand at 3546.512 kb on - strand at 3546.515 kb on - strand at 3546.515 kb on - strand at 3546.515 kb on - strand at 3546.657 kb on - strand, within DDA3937_RS15470 at 3546.716 kb on - strand, within DDA3937_RS15470 at 3546.878 kb on - strand, within DDA3937_RS15470
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 3,545,242 - +0.5 3,545,242 - -0.7 3,545,242 - -1.5 3,545,242 - -0.2 3,545,242 - -0.6 3,545,341 + -0.7 3,545,342 - +0.7 3,545,351 - -1.8 3,545,351 - -0.0 3,545,351 - -0.3 3,546,512 - -1.0 3,546,512 - -1.1 3,546,515 - -0.3 3,546,515 - +0.3 3,546,515 - -0.3 3,546,657 - DDA3937_RS15470 0.16 -1.3 3,546,716 - DDA3937_RS15470 0.22 -0.7 3,546,878 - DDA3937_RS15470 0.38 -0.5
Or see this region's nucleotide sequence