Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS15465

Experiment: Upstate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDDA3937_RS15460 and DDA3937_RS15465 are separated by 152 nucleotidesDDA3937_RS15465 and DDA3937_RS15470 are separated by 36 nucleotides DDA3937_RS15460: DDA3937_RS15460 - histidine--tRNA ligase, at 3,543,909 to 3,545,183 _RS15460 DDA3937_RS15465: DDA3937_RS15465 - flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase, at 3,545,336 to 3,546,457 _RS15465 DDA3937_RS15470: DDA3937_RS15470 - cytoskeleton protein RodZ, at 3,546,494 to 3,547,495 _RS15470 Position (kb) 3545 3546 3547Strain fitness (log2 ratio) -2 -1 0 1at 3545.242 kb on - strandat 3545.242 kb on - strandat 3545.242 kb on - strandat 3545.242 kb on - strandat 3545.242 kb on - strandat 3545.341 kb on + strandat 3545.342 kb on - strandat 3545.351 kb on - strandat 3545.351 kb on - strandat 3545.351 kb on - strandat 3546.512 kb on - strandat 3546.512 kb on - strandat 3546.515 kb on - strandat 3546.515 kb on - strandat 3546.515 kb on - strandat 3546.657 kb on - strand, within DDA3937_RS15470at 3546.716 kb on - strand, within DDA3937_RS15470at 3546.878 kb on - strand, within DDA3937_RS15470

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Upstate
remove
3,545,242 - +0.5
3,545,242 - -0.7
3,545,242 - -1.5
3,545,242 - -0.2
3,545,242 - -0.6
3,545,341 + -0.7
3,545,342 - +0.7
3,545,351 - -1.8
3,545,351 - -0.0
3,545,351 - -0.3
3,546,512 - -1.0
3,546,512 - -1.1
3,546,515 - -0.3
3,546,515 - +0.3
3,546,515 - -0.3
3,546,657 - DDA3937_RS15470 0.16 -1.3
3,546,716 - DDA3937_RS15470 0.22 -0.7
3,546,878 - DDA3937_RS15470 0.38 -0.5

Or see this region's nucleotide sequence