Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS14070

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,213,257	+		DDA3937_RS14065	0.34	+1.2
3,213,258	-		DDA3937_RS14065	0.34	-0.9
3,213,265	+		DDA3937_RS14065	0.34	+1.0
3,213,265	+		DDA3937_RS14065	0.34	-1.1
3,213,265	+		DDA3937_RS14065	0.34	+0.2
3,213,265	+		DDA3937_RS14065	0.34	-2.4
3,213,265	+		DDA3937_RS14065	0.34	-0.1
3,213,265	+		DDA3937_RS14065	0.34	-0.6
3,213,266	-		DDA3937_RS14065	0.34	-1.4
3,213,266	-		DDA3937_RS14065	0.34	+0.6
3,213,267	+		DDA3937_RS14065	0.34	-0.5
3,213,267	+		DDA3937_RS14065	0.34	-1.7
3,213,267	+		DDA3937_RS14065	0.34	+2.6
3,213,267	+		DDA3937_RS14065	0.34	-1.2
3,213,268	-		DDA3937_RS14065	0.34	-0.9
3,213,268	-		DDA3937_RS14065	0.34	-0.2
3,213,268	-		DDA3937_RS14065	0.34	-1.0
3,213,268	-		DDA3937_RS14065	0.34	+1.3
3,213,268	-		DDA3937_RS14065	0.34	-0.6
3,213,268	-		DDA3937_RS14065	0.34	-0.4
3,213,268	-		DDA3937_RS14065	0.34	-0.5
3,213,309	+		DDA3937_RS14065	0.38	-0.4
3,213,309	+		DDA3937_RS14065	0.38	+0.5
3,213,309	+		DDA3937_RS14065	0.38	+0.1
3,213,309	+		DDA3937_RS14065	0.38	-0.5
3,213,309	+		DDA3937_RS14065	0.38	-0.4
3,213,309	+		DDA3937_RS14065	0.38	+1.5
3,213,309	+		DDA3937_RS14065	0.38	-0.1
3,213,309	+		DDA3937_RS14065	0.38	-0.6
3,213,309	+		DDA3937_RS14065	0.38	-0.5
3,213,310	-		DDA3937_RS14065	0.38	+0.0
3,213,310	-		DDA3937_RS14065	0.38	-0.1
3,213,310	-		DDA3937_RS14065	0.38	+0.2
3,213,310	-		DDA3937_RS14065	0.38	-0.1
3,213,310	-		DDA3937_RS14065	0.38	-1.6
3,213,310	-		DDA3937_RS14065	0.38	+0.7
3,213,310	-		DDA3937_RS14065	0.38	+0.6
3,213,310	-		DDA3937_RS14065	0.38	-0.2
3,213,310	-		DDA3937_RS14065	0.38	-0.8
3,213,310	-		DDA3937_RS14065	0.38	-0.3
3,213,344	+		DDA3937_RS14065	0.41	-0.6
3,213,505	+		DDA3937_RS14065	0.55	-0.1
3,213,506	-		DDA3937_RS14065	0.55	-2.5
3,213,507	+		DDA3937_RS14065	0.55	-0.7
3,213,507	+		DDA3937_RS14065	0.55	-0.6
3,213,508	-		DDA3937_RS14065	0.55	+0.2
3,213,508	-		DDA3937_RS14065	0.55	+0.1
3,213,508	-		DDA3937_RS14065	0.55	-2.0
3,213,560	+		DDA3937_RS14065	0.60	-0.3
3,213,560	+		DDA3937_RS14065	0.60	+1.2
3,213,560	+		DDA3937_RS14065	0.60	+2.0
3,213,561	-		DDA3937_RS14065	0.60	-1.3
3,213,561	-		DDA3937_RS14065	0.60	+0.3
3,213,564	+		DDA3937_RS14065	0.60	+0.2
3,213,564	+		DDA3937_RS14065	0.60	+0.5
3,213,564	+		DDA3937_RS14065	0.60	+1.1
3,213,564	+		DDA3937_RS14065	0.60	-0.3
3,213,564	+		DDA3937_RS14065	0.60	-0.2
3,213,564	+		DDA3937_RS14065	0.60	+1.2
3,213,565	-		DDA3937_RS14065	0.60	-0.4
3,213,570	+		DDA3937_RS14065	0.61	+0.5
3,213,570	+		DDA3937_RS14065	0.61	-1.8
3,213,571	-		DDA3937_RS14065	0.61	-1.2
3,213,578	+		DDA3937_RS14065	0.62	+0.9
3,213,578	+		DDA3937_RS14065	0.62	+0.1
3,213,578	+		DDA3937_RS14065	0.62	+1.0
3,213,578	+		DDA3937_RS14065	0.62	-1.8
3,213,579	-		DDA3937_RS14065	0.62	+0.0
3,213,579	-		DDA3937_RS14065	0.62	+0.5
3,213,598	+		DDA3937_RS14065	0.63	-0.5
3,213,599	-		DDA3937_RS14065	0.63	-0.2
3,213,646	+		DDA3937_RS14065	0.67	+0.5
3,213,698	-		DDA3937_RS14065	0.72	+1.1
3,213,713	+		DDA3937_RS14065	0.73	+2.6
3,213,713	+		DDA3937_RS14065	0.73	-0.1
3,213,785	-		DDA3937_RS14065	0.80	+0.9
3,213,785	-		DDA3937_RS14065	0.80	+0.2
3,213,824	-		DDA3937_RS14065	0.83	+1.1
3,213,826	+		DDA3937_RS14065	0.83	-1.0
3,213,826	+				-0.4
3,213,826	+		DDA3937_RS14065	0.83	+1.0
3,213,826	+		DDA3937_RS14065	0.83	+0.1
3,213,827	-		DDA3937_RS14065	0.83	-1.3
3,213,827	-		DDA3937_RS14065	0.83	+1.1
3,213,827	-		DDA3937_RS14065	0.83	-0.5
3,213,858	+		DDA3937_RS14065	0.86	-1.8
3,213,899	+		DDA3937_RS14065	0.90	+0.1
3,213,899	+		DDA3937_RS14065	0.90	-0.4
3,213,931	+				-0.1
3,213,931	+				+0.5
3,213,932	-				+0.2
3,213,932	-				-0.6
3,213,933	+				-0.8
3,213,933	+				-1.1
3,213,933	+				+2.6
3,213,933	+				-0.5
3,213,933	+				+0.9
3,213,933	+				+2.8
3,213,934	-				-0.9
3,213,934	-				-0.2
3,213,934	-				-0.1
3,213,934	-				-1.6
3,213,934	-				-0.9
3,213,935	+				+0.4
3,213,935	+				-1.4
3,213,935	+				-0.4
3,213,935	+				+0.2
3,213,936	-				+0.9
3,213,936	-				-0.2
3,213,936	-				+0.2
3,213,936	-				+1.2
3,213,936	-				+0.1
3,213,936	-				+1.8
3,213,936	-				-0.4
3,213,967	+				-0.4
3,213,967	+				-0.2
3,213,968	-				-0.1
3,213,968	-				+1.3
3,214,019	-				-1.1
3,214,022	-				+0.2
3,214,022	-				+0.4
3,214,025	+				-1.1
3,214,029	+				-0.2
3,214,029	+				+0.8
3,214,029	+				-0.2
3,214,052	+				-0.4
3,214,052	+				-1.2
3,214,068	+				+0.2
3,214,068	+				-0.8
3,214,069	-				+0.1
3,214,069	-				-1.2
3,214,122	+				-0.5
3,214,122	+				+0.4
3,214,122	+				-0.8
3,214,123	-				-0.6
3,214,123	-				+0.5
3,214,123	-				+2.6
3,214,123	-				-0.2
3,214,143	+				+1.2
3,214,144	-				-0.6
3,214,145	+				-0.1
3,214,146	-				-0.3
3,214,160	+				+0.6
3,214,160	+				-0.2
3,214,162	+				+0.4
3,214,162	+				-1.1
3,214,162	+				-1.4
3,214,162	+				-0.6
3,214,163	-				-1.1
3,214,169	+				-0.2
3,214,169	+				-0.8
3,214,169	+				-1.0
3,214,170	-				+0.9
3,214,170	-				+1.5
3,214,170	-				-0.4
3,214,364	-				+1.6
3,214,364	-		DDA3937_RS14070	0.21	+0.4
3,214,382	+		DDA3937_RS14070	0.22	-1.8
3,214,382	+		DDA3937_RS14070	0.22	+1.1
3,214,382	+		DDA3937_RS14070	0.22	-0.4
3,214,382	+		DDA3937_RS14070	0.22	+1.2
3,214,383	-		DDA3937_RS14070	0.23	+0.4
3,214,383	-		DDA3937_RS14070	0.23	+0.2
3,214,383	-		DDA3937_RS14070	0.23	+2.7
3,214,383	-		DDA3937_RS14070	0.23	+0.9
3,214,383	-		DDA3937_RS14070	0.23	+1.2
3,214,408	-		DDA3937_RS14070	0.25	+1.3
3,214,511	+				+1.2
3,214,511	+		DDA3937_RS14070	0.36	+1.2
3,214,511	+		DDA3937_RS14070	0.36	-0.5
3,214,512	-		DDA3937_RS14070	0.37	-0.5
3,214,512	-		DDA3937_RS14070	0.37	-2.2
3,214,512	-		DDA3937_RS14070	0.37	-0.3
3,214,512	-		DDA3937_RS14070	0.37	+0.2
3,214,528	+		DDA3937_RS14070	0.38	+0.0
3,214,528	+		DDA3937_RS14070	0.38	+0.8
3,214,600	+		DDA3937_RS14070	0.46	-0.2
3,214,600	+				-0.8
3,214,600	+		DDA3937_RS14070	0.46	-1.9
3,214,600	+		DDA3937_RS14070	0.46	-0.4
3,214,600	+				+0.2
3,214,600	+		DDA3937_RS14070	0.46	+0.8
3,214,600	+		DDA3937_RS14070	0.46	+0.2
3,214,600	+		DDA3937_RS14070	0.46	+0.4
3,214,601	-		DDA3937_RS14070	0.46	-0.4
3,214,601	-		DDA3937_RS14070	0.46	+0.8
3,214,601	-		DDA3937_RS14070	0.46	-1.6
3,214,601	-		DDA3937_RS14070	0.46	-0.3
3,214,601	-		DDA3937_RS14070	0.46	+0.2
3,214,617	+		DDA3937_RS14070	0.48	-0.9
3,214,617	+				+0.2
3,214,618	-		DDA3937_RS14070	0.48	+0.2
3,214,618	-		DDA3937_RS14070	0.48	-0.0
3,214,618	-		DDA3937_RS14070	0.48	-0.8
3,214,645	+		DDA3937_RS14070	0.51	+1.2
3,214,665	+		DDA3937_RS14070	0.53	-0.9
3,214,666	-		DDA3937_RS14070	0.53	-0.2
3,214,666	-		DDA3937_RS14070	0.53	+0.7
3,214,694	+		DDA3937_RS14070	0.56	-1.7
3,214,695	-		DDA3937_RS14070	0.56	-1.6
3,214,695	-		DDA3937_RS14070	0.56	-1.4
3,214,696	+		DDA3937_RS14070	0.57	+0.1
3,214,696	+		DDA3937_RS14070	0.57	+0.5
3,214,697	-		DDA3937_RS14070	0.57	-0.7
3,214,697	-		DDA3937_RS14070	0.57	-0.5
3,214,697	-		DDA3937_RS14070	0.57	-0.3
3,214,697	-		DDA3937_RS14070	0.57	-1.9
3,214,697	-		DDA3937_RS14070	0.57	-0.5
3,214,747	+		DDA3937_RS14070	0.62	+0.4
3,214,747	+		DDA3937_RS14070	0.62	-1.8
3,214,896	+		DDA3937_RS14070	0.78	-0.2
3,214,896	+		DDA3937_RS14070	0.78	+0.1
3,214,897	-		DDA3937_RS14070	0.78	+1.2
3,214,897	-		DDA3937_RS14070	0.78	-0.2
3,214,904	-		DDA3937_RS14070	0.79	+0.4
3,214,917	+		DDA3937_RS14070	0.81	+0.2
3,214,918	-		DDA3937_RS14070	0.81	+1.3
3,214,918	-		DDA3937_RS14070	0.81	-0.1
3,214,931	-		DDA3937_RS14070	0.82	-0.5
3,214,931	-		DDA3937_RS14070	0.82	-0.4
3,214,931	-		DDA3937_RS14070	0.82	-0.4
3,215,095	+				-0.1
3,215,095	+				-0.6
3,215,095	+				+1.6
3,215,096	-				-2.0
3,215,160	-		DDA3937_RS23275	0.23	-0.5
3,215,170	+		DDA3937_RS23275	0.27	-0.1
3,215,174	+		DDA3937_RS23275	0.28	-1.9
3,215,174	+		DDA3937_RS23275	0.28	-0.4
3,215,174	+		DDA3937_RS23275	0.28	+0.2
3,215,174	+		DDA3937_RS23275	0.28	+0.0
3,215,174	+		DDA3937_RS23275	0.28	-2.4
3,215,174	+		DDA3937_RS23275	0.28	-0.2
3,215,174	+		DDA3937_RS23275	0.28	-0.0
3,215,175	-				+1.8
3,215,175	-		DDA3937_RS23275	0.28	+0.5
3,215,175	-		DDA3937_RS23275	0.28	-0.2
3,215,175	-		DDA3937_RS23275	0.28	-2.1
3,215,179	+		DDA3937_RS23275	0.30	+0.2
3,215,179	+		DDA3937_RS23275	0.30	-0.7
3,215,179	+		DDA3937_RS23275	0.30	+0.3
3,215,180	-		DDA3937_RS23275	0.30	+1.7
3,215,185	+		DDA3937_RS23275	0.32	-0.2
3,215,196	-		DDA3937_RS23275	0.36	-0.5
3,215,198	+		DDA3937_RS23275	0.37	-1.2
3,215,198	+		DDA3937_RS23275	0.37	-0.6
3,215,198	+		DDA3937_RS23275	0.37	-0.7
3,215,198	+		DDA3937_RS23275	0.37	-2.0
3,215,252	+		DDA3937_RS23275	0.58	-0.8
3,215,252	+		DDA3937_RS23275	0.58	+0.2
3,215,253	-		DDA3937_RS23275	0.58	+0.3
3,215,253	-		DDA3937_RS23275	0.58	+0.9
3,215,253	-		DDA3937_RS23275	0.58	+0.1
3,215,255	+		DDA3937_RS23275	0.59	+0.9
3,215,255	+		DDA3937_RS23275	0.59	-1.3
3,215,255	+		DDA3937_RS23275	0.59	-0.9
3,215,255	+		DDA3937_RS23275	0.59	-0.6
3,215,255	+		DDA3937_RS23275	0.59	-1.7
3,215,256	-		DDA3937_RS23275	0.59	+0.4
3,215,256	-		DDA3937_RS23275	0.59	-1.1
3,215,256	-		DDA3937_RS23275	0.59	-0.5
3,215,256	-		DDA3937_RS23275	0.59	-1.4
3,215,256	-		DDA3937_RS23275	0.59	-2.2
3,215,256	-		DDA3937_RS23275	0.59	-0.2
3,215,256	-		DDA3937_RS23275	0.59	-1.5
3,215,259	+		DDA3937_RS23275	0.60	+0.1
3,215,259	+		DDA3937_RS23275	0.60	-1.4
3,215,260	-		DDA3937_RS23275	0.61	+1.0
3,215,260	-		DDA3937_RS23275	0.61	-0.5
3,215,298	-		DDA3937_RS23275	0.75	+0.2
3,215,347	-				-0.2
3,215,370	+				+1.5
3,215,371	-				-1.6
3,215,371	-				-1.6
3,215,371	-				-0.1
3,215,371	-				+0.1
3,215,373	-				-0.2
3,215,378	+				-1.5
3,215,399	+				+1.6
3,215,399	+				-1.2
3,215,399	+				-1.5
3,215,399	+				-0.2
3,215,400	-				+0.7
3,215,408	+				+0.6
3,215,408	+				+0.0
3,215,408	+				-1.5
3,215,423	-				+4.0
3,215,448	-				+0.9
3,215,448	-				-1.0
3,215,451	+				-1.5
3,215,451	+				-0.6
3,215,452	-				-0.5
3,215,518	+				-1.4
3,215,518	+				-0.7
3,215,519	-				+1.2
3,215,523	+				+0.6
3,215,523	+				-1.6
3,215,523	+				+1.1
3,215,523	+				-1.6
3,215,523	+				+0.5
3,215,523	+				+1.1
3,215,524	-				-1.6
3,215,524	-				+1.5
3,215,524	-				+0.5
3,215,524	-				-0.4
3,215,524	-				+0.6
3,215,524	-				-3.0
3,215,524	-				-0.9
3,215,524	-				-0.6
3,215,590	-				+0.5
3,215,625	-				-0.4
3,215,627	+				-2.4
3,215,627	+				-2.0
3,215,628	-				-0.4
3,215,628	-				+1.0
3,215,628	-				+0.5
3,215,628	-				+0.2
3,215,628	-				+0.7
3,215,631	+				-1.8
3,215,632	-				+0.7
3,215,738	+		DDA3937_RS14075	0.24	-0.8
3,215,738	+		DDA3937_RS14075	0.24	-1.2
3,215,739	-		DDA3937_RS14075	0.24	-0.4
3,215,739	-		DDA3937_RS14075	0.24	+0.5
3,215,746	+		DDA3937_RS14075	0.25	+1.0
3,215,746	+		DDA3937_RS14075	0.25	-1.2
3,215,746	+		DDA3937_RS14075	0.25	+0.3
3,215,747	-		DDA3937_RS14075	0.25	-0.7
3,215,747	-		DDA3937_RS14075	0.25	+0.6
3,215,747	-		DDA3937_RS14075	0.25	+0.1
3,215,780	+		DDA3937_RS14075	0.32	-0.8
3,215,780	+		DDA3937_RS14075	0.32	-0.4
3,215,780	+		DDA3937_RS14075	0.32	+0.1
3,215,780	+		DDA3937_RS14075	0.32	-0.3
3,215,780	+		DDA3937_RS14075	0.32	-1.4
3,215,780	+		DDA3937_RS14075	0.32	-0.5
3,215,781	-		DDA3937_RS14075	0.32	-1.7
3,215,781	-		DDA3937_RS14075	0.32	-3.0
3,215,787	+		DDA3937_RS14075	0.33	-0.5
3,215,787	+		DDA3937_RS14075	0.33	+0.6
3,215,788	-		DDA3937_RS14075	0.33	-0.6
3,215,839	+		DDA3937_RS14075	0.42	-1.1
3,215,845	+		DDA3937_RS14075	0.43	-1.1
3,215,845	+		DDA3937_RS14075	0.43	+2.5
3,215,845	+		DDA3937_RS14075	0.43	-0.4
3,215,845	+		DDA3937_RS14075	0.43	+0.2
3,215,846	-		DDA3937_RS14075	0.44	-0.3
3,215,974	+		DDA3937_RS14075	0.67	-0.3
3,215,998	+		DDA3937_RS14075	0.71	-0.0
3,215,998	+		DDA3937_RS14075	0.71	-0.1
3,215,999	-		DDA3937_RS14075	0.72	-2.4
3,216,007	-		DDA3937_RS14075	0.73	+0.9
3,216,077	+		DDA3937_RS14075	0.86	+1.0
3,216,078	-		DDA3937_RS14075	0.86	-0.2
3,216,078	-		DDA3937_RS14075	0.86	+0.3
3,216,078	-		DDA3937_RS14075	0.86	-2.4