Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS13860

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,151,967	-		DDA3937_RS13855	0.25	-0.4
3,151,990	+		DDA3937_RS13855	0.27	-0.1
3,152,016	-		DDA3937_RS13855	0.30	+0.1
3,152,016	-		DDA3937_RS13855	0.30	-0.7
3,152,016	-		DDA3937_RS13855	0.30	+0.4
3,152,016	-		DDA3937_RS13855	0.30	+0.9
3,152,016	-		DDA3937_RS13855	0.30	-0.2
3,152,016	-		DDA3937_RS13855	0.30	-0.2
3,152,098	-		DDA3937_RS13855	0.38	-0.7
3,152,101	+		DDA3937_RS13855	0.38	-0.7
3,152,101	+		DDA3937_RS13855	0.38	-0.5
3,152,102	-		DDA3937_RS13855	0.38	-1.3
3,152,102	-		DDA3937_RS13855	0.38	+1.1
3,152,203	+		DDA3937_RS13855	0.48	+2.6
3,152,203	+		DDA3937_RS13855	0.48	+0.4
3,152,204	-		DDA3937_RS13855	0.48	+1.2
3,152,204	-		DDA3937_RS13855	0.48	-2.3
3,152,206	+		DDA3937_RS13855	0.48	-0.2
3,152,207	-		DDA3937_RS13855	0.48	+3.1
3,152,227	+		DDA3937_RS13855	0.50	-1.3
3,152,227	+		DDA3937_RS13855	0.50	+0.9
3,152,227	+		DDA3937_RS13855	0.50	-0.8
3,152,228	-		DDA3937_RS13855	0.50	-0.6
3,152,248	-		DDA3937_RS13855	0.52	-1.9
3,152,248	-		DDA3937_RS13855	0.52	-0.3
3,152,248	-		DDA3937_RS13855	0.52	+1.7
3,152,248	-		DDA3937_RS13855	0.52	+1.8
3,152,248	-		DDA3937_RS13855	0.52	-0.8
3,152,248	-		DDA3937_RS13855	0.52	-0.4
3,152,270	+		DDA3937_RS13855	0.54	-0.2
3,152,271	-		DDA3937_RS13855	0.55	-0.4
3,152,294	+		DDA3937_RS13855	0.57	+1.2
3,152,294	+		DDA3937_RS13855	0.57	-0.8
3,152,327	-		DDA3937_RS13855	0.60	-1.6
3,152,345	+		DDA3937_RS13855	0.62	+1.4
3,152,346	-		DDA3937_RS13855	0.62	+1.1
3,152,346	-		DDA3937_RS13855	0.62	-0.1
3,152,349	+		DDA3937_RS13855	0.62	+0.2
3,152,349	+		DDA3937_RS13855	0.62	+0.0
3,152,349	+		DDA3937_RS13855	0.62	-1.6
3,152,349	+		DDA3937_RS13855	0.62	-1.0
3,152,360	+		DDA3937_RS13855	0.63	-0.8
3,152,361	-		DDA3937_RS13855	0.63	-0.3
3,152,365	+		DDA3937_RS13855	0.64	+0.1
3,152,365	+		DDA3937_RS13855	0.64	-0.2
3,152,369	+		DDA3937_RS13855	0.64	+1.3
3,152,370	-		DDA3937_RS13855	0.64	-1.5
3,152,400	-		DDA3937_RS13855	0.67	-0.2
3,152,400	-		DDA3937_RS13855	0.67	+1.2
3,152,406	-		DDA3937_RS13855	0.68	-0.4
3,152,406	-		DDA3937_RS13855	0.68	+0.7
3,152,453	+		DDA3937_RS13855	0.72	-0.3
3,152,453	+		DDA3937_RS13855	0.72	-1.1
3,152,485	+		DDA3937_RS13855	0.75	-0.1
3,152,485	+		DDA3937_RS13855	0.75	-2.8
3,152,485	+		DDA3937_RS13855	0.75	+0.5
3,152,486	-		DDA3937_RS13855	0.75	-0.7
3,152,705	+				-0.8
3,152,706	-				+1.2
3,152,717	+				+1.4
3,152,796	+				-2.2
3,152,796	+				-0.6
3,152,796	+				+0.7
3,152,796	+				+1.5
3,152,797	-				+0.5
3,152,797	-				-0.2
3,152,797	-				+1.5
3,152,797	-				-0.1
3,152,797	-				+0.0
3,152,798	+				+0.8
3,152,798	+				+1.2
3,152,798	+				-1.1
3,152,798	+				-0.1
3,152,798	+				+0.2
3,152,799	-				+1.2
3,152,799	-				-0.6
3,152,799	-				+0.5
3,152,799	-				+0.2
3,152,799	-				+0.3
3,152,799	-				+1.2
3,153,102	+		DDA3937_RS13860	0.21	-1.6
3,153,103	-		DDA3937_RS13860	0.21	-0.1
3,153,137	+		DDA3937_RS13860	0.26	+0.2
3,153,137	+		DDA3937_RS13860	0.26	+0.6
3,153,138	-		DDA3937_RS13860	0.26	-0.2
3,153,166	+		DDA3937_RS13860	0.30	-1.3
3,153,172	+		DDA3937_RS13860	0.31	-2.2
3,153,172	+		DDA3937_RS13860	0.31	-0.6
3,153,172	+		DDA3937_RS13860	0.31	-0.4
3,153,172	+		DDA3937_RS13860	0.31	+1.2
3,153,172	+		DDA3937_RS13860	0.31	+0.5
3,153,172	+		DDA3937_RS13860	0.31	+0.8
3,153,172	+		DDA3937_RS13860	0.31	-0.8
3,153,172	+		DDA3937_RS13860	0.31	-1.1
3,153,172	+		DDA3937_RS13860	0.31	-0.3
3,153,172	+		DDA3937_RS13860	0.31	-0.8
3,153,172	+		DDA3937_RS13860	0.31	+0.4
3,153,173	-		DDA3937_RS13860	0.31	-0.8
3,153,173	-		DDA3937_RS13860	0.31	-0.4
3,153,173	-		DDA3937_RS13860	0.31	-0.6
3,153,173	-		DDA3937_RS13860	0.31	-1.1
3,153,173	-		DDA3937_RS13860	0.31	-0.3
3,153,173	-		DDA3937_RS13860	0.31	-0.5
3,153,173	-		DDA3937_RS13860	0.31	+0.0
3,153,173	-		DDA3937_RS13860	0.31	+0.5
3,153,173	-		DDA3937_RS13860	0.31	-1.2
3,153,173	-		DDA3937_RS13860	0.31	+0.1
3,153,173	-		DDA3937_RS13860	0.31	+0.4
3,153,173	-		DDA3937_RS13860	0.31	-2.6
3,153,241	+		DDA3937_RS13860	0.41	-0.9
3,153,241	+		DDA3937_RS13860	0.41	+1.2
3,153,262	+		DDA3937_RS13860	0.44	+0.4
3,153,263	-		DDA3937_RS13860	0.44	-0.1
3,153,264	+		DDA3937_RS13860	0.45	-1.1
3,153,265	-		DDA3937_RS13860	0.45	-0.8
3,153,265	-		DDA3937_RS13860	0.45	-0.8
3,153,265	-		DDA3937_RS13860	0.45	+1.4
3,153,265	-		DDA3937_RS13860	0.45	-0.1
3,153,265	-		DDA3937_RS13860	0.45	-0.6
3,153,268	+		DDA3937_RS13860	0.45	-1.9
3,153,268	+		DDA3937_RS13860	0.45	+2.0
3,153,268	+		DDA3937_RS13860	0.45	+0.8
3,153,269	-		DDA3937_RS13860	0.45	+0.5
3,153,269	-		DDA3937_RS13860	0.45	-0.3
3,153,269	-		DDA3937_RS13860	0.45	+0.1
3,153,269	-		DDA3937_RS13860	0.45	-1.1
3,153,269	-		DDA3937_RS13860	0.45	+0.8
3,153,269	-		DDA3937_RS13860	0.45	-0.8
3,153,269	-		DDA3937_RS13860	0.45	-0.5
3,153,289	+		DDA3937_RS13860	0.48	-3.1
3,153,290	-		DDA3937_RS13860	0.48	-0.1
3,153,290	-		DDA3937_RS13860	0.48	+1.4
3,153,334	+		DDA3937_RS13860	0.55	+0.2
3,153,335	-		DDA3937_RS13860	0.55	-0.2
3,153,391	+		DDA3937_RS13860	0.63	+1.7
3,153,392	-		DDA3937_RS13860	0.63	-1.3
3,153,392	-		DDA3937_RS13860	0.63	-0.2
3,153,412	-		DDA3937_RS13860	0.66	+1.2
3,153,412	-		DDA3937_RS13860	0.66	-0.5
3,153,469	-		DDA3937_RS13860	0.75	-0.2
3,153,476	+		DDA3937_RS13860	0.76	-0.3
3,153,535	+		DDA3937_RS13860	0.84	-0.1
3,153,535	+		DDA3937_RS13860	0.84	-0.5
3,153,542	-		DDA3937_RS13860	0.85	+0.5
3,153,610	+				-0.3
3,153,658	+				+0.2
3,153,658	+				+0.2
3,153,750	+		DDA3937_RS13865	0.12	-0.6
3,153,750	+		DDA3937_RS13865	0.12	-0.1
3,153,750	+		DDA3937_RS13865	0.12	+0.7
3,153,751	-		DDA3937_RS13865	0.13	-0.1
3,153,751	-		DDA3937_RS13865	0.13	-0.0
3,153,751	-		DDA3937_RS13865	0.13	+0.8
3,153,941	+		DDA3937_RS13865	0.34	-0.9
3,154,032	-		DDA3937_RS13865	0.44	+0.2
3,154,212	+		DDA3937_RS13865	0.64	-0.7
3,154,214	+		DDA3937_RS13865	0.64	-0.2
3,154,214	+		DDA3937_RS13865	0.64	-0.7
3,154,214	+		DDA3937_RS13865	0.64	-0.6
3,154,215	-		DDA3937_RS13865	0.64	-0.3
3,154,215	-		DDA3937_RS13865	0.64	-0.2
3,154,215	-		DDA3937_RS13865	0.64	-1.3
3,154,383	+		DDA3937_RS13865	0.83	+0.6
3,154,383	+		DDA3937_RS13865	0.83	-0.6
3,154,383	+		DDA3937_RS13865	0.83	-1.2
3,154,383	+		DDA3937_RS13865	0.83	-0.7
3,154,426	+		DDA3937_RS13865	0.88	-0.7
3,154,426	+		DDA3937_RS13865	0.88	+0.6
3,154,426	+		DDA3937_RS13865	0.88	-0.7
3,154,427	-		DDA3937_RS13865	0.88	-0.7
3,154,427	-		DDA3937_RS13865	0.88	+0.9
3,154,552	+				-0.6