Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS13705

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,121,135	+		DDA3937_RS13700	0.50	+0.4
3,121,194	-		DDA3937_RS13700	0.54	-1.0
3,121,201	+		DDA3937_RS13700	0.54	-0.8
3,121,202	-		DDA3937_RS13700	0.54	-0.4
3,121,202	-		DDA3937_RS13700	0.54	+1.8
3,121,202	-		DDA3937_RS13700	0.54	-1.0
3,121,248	+		DDA3937_RS13700	0.56	-0.6
3,121,248	+		DDA3937_RS13700	0.56	+0.8
3,121,249	-		DDA3937_RS13700	0.57	+0.7
3,121,249	-		DDA3937_RS13700	0.57	-1.5
3,121,347	+		DDA3937_RS13700	0.62	-1.5
3,121,347	+		DDA3937_RS13700	0.62	-1.4
3,121,348	-		DDA3937_RS13700	0.62	+0.9
3,121,348	-		DDA3937_RS13700	0.62	+0.5
3,121,465	+		DDA3937_RS13700	0.68	-0.6
3,121,465	+		DDA3937_RS13700	0.68	+0.4
3,121,466	-		DDA3937_RS13700	0.68	+0.4
3,121,571	-		DDA3937_RS13700	0.74	+0.4
3,121,571	-		DDA3937_RS13700	0.74	-0.5
3,121,572	+		DDA3937_RS13700	0.74	+2.4
3,121,572	+		DDA3937_RS13700	0.74	-0.6
3,121,572	+		DDA3937_RS13700	0.74	+0.9
3,121,572	+		DDA3937_RS13700	0.74	-2.8
3,121,572	+		DDA3937_RS13700	0.74	+0.4
3,121,573	-		DDA3937_RS13700	0.74	-1.2
3,121,573	-		DDA3937_RS13700	0.74	-0.2
3,121,573	-		DDA3937_RS13700	0.74	+0.4
3,121,573	-		DDA3937_RS13700	0.74	-0.7
3,121,663	+		DDA3937_RS13700	0.79	-0.4
3,121,664	-		DDA3937_RS13700	0.79	-1.6
3,121,716	-		DDA3937_RS13700	0.82	-0.3
3,121,748	+		DDA3937_RS13700	0.84	-1.9
3,121,749	-		DDA3937_RS13700	0.84	-0.6
3,121,749	-		DDA3937_RS13700	0.84	-0.9
3,121,771	+		DDA3937_RS13700	0.85	+1.1
3,121,772	-		DDA3937_RS13700	0.85	-0.5
3,121,772	-		DDA3937_RS13700	0.85	-0.6
3,121,795	+		DDA3937_RS13700	0.86	-1.1
3,121,795	+		DDA3937_RS13700	0.86	-0.3
3,121,795	+		DDA3937_RS13700	0.86	+0.2
3,121,795	+		DDA3937_RS13700	0.86	-0.3
3,121,796	-		DDA3937_RS13700	0.86	-0.4
3,121,796	-		DDA3937_RS13700	0.86	-0.8
3,121,796	-		DDA3937_RS13700	0.86	-1.9
3,121,796	-		DDA3937_RS13700	0.86	-0.8
3,121,796	-		DDA3937_RS13700	0.86	-0.7
3,121,796	-		DDA3937_RS13700	0.86	-0.3
3,121,796	-		DDA3937_RS13700	0.86	-0.2
3,121,883	+				-1.3
3,121,883	+				+0.4
3,121,883	+				-0.8
3,121,929	+				-1.3
3,121,930	-				-0.4
3,121,930	-				-0.5
3,121,951	+				-1.2
3,121,951	+				+0.1
3,121,951	+				-2.1
3,121,951	+				-2.3
3,121,952	-				-1.3
3,121,952	-				-1.3
3,121,952	-				-1.1
3,121,952	-				+0.2
3,121,955	+				-1.3
3,121,955	+				-0.5
3,121,955	+				-0.0
3,121,955	+				-0.9
3,121,956	-				-2.8
3,121,956	-				-0.1
3,121,975	+				-1.0
3,121,975	+				-0.3
3,121,975	+				-0.9
3,121,975	+				-0.8
3,121,975	+				-1.3
3,121,975	+				-1.6
3,121,975	+				+0.9
3,121,975	+				-0.1
3,121,976	-				-0.3
3,121,976	-				-0.2
3,121,976	-				-0.8
3,121,976	-				-0.3
3,121,976	-				-1.1
3,121,976	-				+0.0
3,121,976	-				-0.8
3,121,976	-				+0.4
3,121,976	-				-1.2
3,121,979	+				-2.6
3,121,979	+				+0.7
3,121,980	-				+0.4
3,121,980	-				-1.4
3,121,980	-				-2.3
3,121,980	-				-0.5
3,121,980	-				+0.8
3,121,980	-				-0.7
3,121,980	-				-0.8
3,121,980	-				-0.5
3,121,980	-				+0.5
3,121,980	-				-0.2
3,122,047	-				+1.2
3,122,049	+				-1.6
3,122,049	+				-0.8
3,122,049	+				-0.8
3,122,049	+				-0.3
3,122,049	+				-0.7
3,122,049	+				-0.8
3,122,049	+				+0.8
3,122,049	+				-0.6
3,122,050	-				-0.2
3,122,050	-				+0.2
3,122,050	-				-0.0
3,122,050	-				-0.6
3,122,050	-				-1.2
3,122,050	-				+0.5
3,122,071	+				+0.2
3,122,071	+				+2.3
3,122,071	+				-0.1
3,122,071	+				-0.9
3,122,071	+				-0.9
3,122,071	+				-1.5
3,122,072	-				-0.4
3,122,116	+		DDA3937_RS13705	0.12	+1.5
3,122,117	-		DDA3937_RS13705	0.12	-1.3
3,122,117	-		DDA3937_RS13705	0.12	-0.6
3,122,117	-		DDA3937_RS13705	0.12	-1.6
3,122,147	+		DDA3937_RS13705	0.17	-1.7
3,122,147	+		DDA3937_RS13705	0.17	-0.4
3,122,148	-		DDA3937_RS13705	0.17	-1.5
3,122,148	-		DDA3937_RS13705	0.17	-3.0
3,122,148	-		DDA3937_RS13705	0.17	-1.8
3,122,148	-		DDA3937_RS13705	0.17	-1.6
3,122,211	+		DDA3937_RS13705	0.26	+0.1
3,122,212	-		DDA3937_RS13705	0.26	+0.7
3,122,233	+		DDA3937_RS13705	0.30	+0.6
3,122,233	+		DDA3937_RS13705	0.30	-0.8
3,122,234	-		DDA3937_RS13705	0.30	-1.3
3,122,234	-		DDA3937_RS13705	0.30	-1.2
3,122,234	-		DDA3937_RS13705	0.30	-2.5
3,122,322	+		DDA3937_RS13705	0.43	+0.1
3,122,322	+		DDA3937_RS13705	0.43	-0.8
3,122,322	+		DDA3937_RS13705	0.43	-0.6
3,122,323	-		DDA3937_RS13705	0.43	-1.0
3,122,323	-		DDA3937_RS13705	0.43	-1.9
3,122,323	-		DDA3937_RS13705	0.43	-0.8
3,122,324	+		DDA3937_RS13705	0.44	-0.6
3,122,324	+		DDA3937_RS13705	0.44	-1.3
3,122,325	-		DDA3937_RS13705	0.44	-1.0
3,122,388	+		DDA3937_RS13705	0.53	+0.1
3,122,388	+		DDA3937_RS13705	0.53	-1.1
3,122,388	+		DDA3937_RS13705	0.53	-0.6
3,122,388	+		DDA3937_RS13705	0.53	-0.9
3,122,388	+		DDA3937_RS13705	0.53	+0.5
3,122,388	+		DDA3937_RS13705	0.53	-1.8
3,122,389	-		DDA3937_RS13705	0.53	-0.2
3,122,393	+		DDA3937_RS13705	0.54	-0.8
3,122,393	+		DDA3937_RS13705	0.54	-2.3
3,122,422	-		DDA3937_RS13705	0.58	-1.5
3,122,459	-		DDA3937_RS13705	0.64	-1.3
3,122,459	-		DDA3937_RS13705	0.64	-1.0
3,122,459	-		DDA3937_RS13705	0.64	-1.9
3,122,459	-		DDA3937_RS13705	0.64	-0.8
3,122,460	+		DDA3937_RS13705	0.64	-1.0
3,122,460	+		DDA3937_RS13705	0.64	+0.7
3,122,460	+		DDA3937_RS13705	0.64	-2.8
3,122,486	-		DDA3937_RS13705	0.68	+0.5
3,122,533	-		DDA3937_RS13705	0.75	-1.2
3,122,559	+		DDA3937_RS13705	0.79	-0.3
3,122,559	+		DDA3937_RS13705	0.79	-0.7
3,122,560	-		DDA3937_RS13705	0.79	-0.3
3,122,560	-		DDA3937_RS13705	0.79	+0.2
3,122,563	-				-0.3
3,122,563	-		DDA3937_RS13705	0.80	-1.2
3,122,623	-		DDA3937_RS13705	0.89	-1.5
3,122,623	-		DDA3937_RS13705	0.89	-1.2
3,122,623	-		DDA3937_RS13705	0.89	-2.1
3,122,625	+		DDA3937_RS13705	0.89	-0.9
3,122,625	+		DDA3937_RS13705	0.89	-2.0
3,122,724	-				+1.1
3,122,747	+				-1.1
3,122,747	+				+0.7
3,122,748	-				+0.2
3,122,750	+				-0.2
3,122,750	+				-1.8
3,122,750	+				-1.9
3,122,750	+				-1.6
3,122,751	-				-0.2
3,122,751	-				-0.8
3,122,805	+				-0.5
3,122,815	+				+0.7
3,122,815	+				+0.2
3,122,816	-				+0.5
3,122,818	+				-0.8
3,122,818	+				-1.3
3,122,819	-				+0.5
3,122,882	-				-0.5
3,122,887	+				+0.1
3,122,887	+				+1.2
3,122,888	-				+0.2
3,122,888	-				+0.3
3,122,955	-				-1.1
3,122,983	-				-0.8
3,123,024	+				-0.7
3,123,025	-				-1.5
3,123,058	-				+2.1
3,123,066	+				-0.1
3,123,067	-				-0.3
3,123,067	-				-0.8
3,123,067	-				+0.7
3,123,086	-				-0.8
3,123,091	+				-0.1
3,123,107	+				-0.5
3,123,107	+				+0.4
3,123,107	+				-0.9
3,123,107	+				+1.5
3,123,147	-				+0.7
3,123,155	-				-0.5
3,123,242	-				-1.3
3,123,246	+				+0.6
3,123,247	-				+0.6
3,123,247	-				-0.0
3,123,248	+				+0.4
3,123,344	+				+0.2
3,123,345	-				+0.8
3,123,345	-				+1.6
3,123,486	+		DDA3937_RS13710	0.63	-0.1
3,123,486	+		DDA3937_RS13710	0.63	+0.5
3,123,487	-		DDA3937_RS13710	0.63	-1.6
3,123,487	-		DDA3937_RS13710	0.63	+0.2
3,123,539	+		DDA3937_RS13710	0.86	-0.5
3,123,559	-				-0.3
3,123,680	+				+0.2
3,123,681	-				-0.0