Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS13505

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,074,552	-		DDA3937_RS13490	0.89	-0.6
3,074,602	+				+0.1
3,074,603	-				-2.8
3,074,734	+		DDA3937_RS13495	0.33	-0.5
3,074,805	+		DDA3937_RS13495	0.49	-0.0
3,074,805	+		DDA3937_RS13495	0.49	-0.7
3,074,806	-		DDA3937_RS13495	0.50	-0.3
3,074,810	+		DDA3937_RS13495	0.50	-1.2
3,074,811	-		DDA3937_RS13495	0.51	-1.5
3,074,811	-		DDA3937_RS13495	0.51	+0.6
3,074,855	-		DDA3937_RS13495	0.61	-0.1
3,075,020	+				+0.5
3,075,048	+				-0.2
3,075,049	-				-2.2
3,075,056	+				-0.6
3,075,056	+				-0.4
3,075,056	+				-0.6
3,075,056	+				-1.1
3,075,056	+				-0.8
3,075,056	+				-0.0
3,075,057	-				-1.6
3,075,057	-				-1.7
3,075,057	-				-1.2
3,075,057	-				-0.1
3,075,057	-				+0.2
3,075,060	+				-2.2
3,075,061	-				-2.3
3,075,082	+				+0.5
3,075,083	-				-1.3
3,075,083	-				-2.8
3,075,083	-				-0.8
3,075,083	-				+1.5
3,075,083	-				-0.4
3,075,090	+				+0.6
3,075,091	-				+0.1
3,075,098	+				-0.6
3,075,099	-				-1.0
3,075,099	-				+1.2
3,075,102	+				-2.1
3,075,102	+				-0.1
3,075,102	+				-0.0
3,075,103	-				-0.3
3,075,103	-				-2.2
3,075,103	-				+0.3
3,075,103	-				-3.0
3,075,104	+				-0.0
3,075,104	+				+2.8
3,075,105	-				+0.0
3,075,105	-				+0.6
3,075,170	+		DDA3937_RS13500	0.17	-2.4
3,075,170	+		DDA3937_RS13500	0.17	-1.4
3,075,171	-		DDA3937_RS13500	0.17	-0.0
3,075,171	-		DDA3937_RS13500	0.17	-0.4
3,075,171	-		DDA3937_RS13500	0.17	-1.1
3,075,171	-				+0.2
3,075,171	-		DDA3937_RS13500	0.17	-1.6
3,075,184	-		DDA3937_RS13500	0.21	-0.7
3,075,202	+		DDA3937_RS13500	0.25	+2.2
3,075,203	-		DDA3937_RS13500	0.25	-0.1
3,075,259	-		DDA3937_RS13500	0.38	-0.9
3,075,286	+		DDA3937_RS13500	0.45	+0.9
3,075,286	+		DDA3937_RS13500	0.45	-1.6
3,075,320	+		DDA3937_RS13500	0.53	-0.5
3,075,321	-				+0.2
3,075,404	+		DDA3937_RS13500	0.73	-1.6
3,075,405	-		DDA3937_RS13500	0.73	-0.5
3,075,485	-				+2.3
3,075,489	+				-1.7
3,075,489	+				-0.0
3,075,490	-				-0.8
3,075,490	-				-2.1
3,075,492	+				-0.5
3,075,493	-				-2.8
3,075,630	+				-1.5
3,075,631	-				-1.9
3,075,693	+				-1.2
3,075,693	+				-1.3
3,075,693	+				+1.8
3,075,693	+				-1.1
3,075,694	-				-0.9
3,075,694	-				-1.4
3,075,694	-				-1.7
3,075,694	-				-0.1
3,075,694	-				-1.2
3,075,768	+		DDA3937_RS13505	0.12	-1.8
3,075,769	-		DDA3937_RS13505	0.12	-1.5
3,075,792	-		DDA3937_RS13505	0.13	-1.1
3,075,792	-		DDA3937_RS13505	0.13	-1.7
3,075,845	+		DDA3937_RS13505	0.16	-0.2
3,075,863	+		DDA3937_RS13505	0.16	-1.0
3,075,876	-		DDA3937_RS13505	0.17	+0.5
3,075,886	+		DDA3937_RS13505	0.18	+1.2
3,075,887	-		DDA3937_RS13505	0.18	-1.8
3,075,999	+		DDA3937_RS13505	0.23	-1.6
3,076,019	+		DDA3937_RS13505	0.24	-1.1
3,076,019	+		DDA3937_RS13505	0.24	-2.7
3,076,019	+		DDA3937_RS13505	0.24	-0.9
3,076,020	-		DDA3937_RS13505	0.24	+0.4
3,076,116	+		DDA3937_RS13505	0.29	-3.0
3,076,116	+		DDA3937_RS13505	0.29	+0.6
3,076,117	-		DDA3937_RS13505	0.29	-0.4
3,076,133	+				+0.2
3,076,165	+		DDA3937_RS13505	0.31	+2.9
3,076,165	+		DDA3937_RS13505	0.31	+0.2
3,076,165	+		DDA3937_RS13505	0.31	-0.7
3,076,166	-		DDA3937_RS13505	0.31	-1.0
3,076,344	-		DDA3937_RS13505	0.40	+0.2
3,076,344	-		DDA3937_RS13505	0.40	-1.6
3,076,434	-		DDA3937_RS13505	0.44	-1.0
3,076,434	-		DDA3937_RS13505	0.44	+1.4
3,076,434	-		DDA3937_RS13505	0.44	-1.5
3,076,437	-		DDA3937_RS13505	0.44	-0.3
3,076,443	-		DDA3937_RS13505	0.44	-1.4
3,076,443	-		DDA3937_RS13505	0.44	-0.5
3,076,500	+		DDA3937_RS13505	0.47	+0.2
3,076,500	+		DDA3937_RS13505	0.47	-1.1
3,076,500	+		DDA3937_RS13505	0.47	-1.0
3,076,500	+		DDA3937_RS13505	0.47	-0.9
3,076,501	-		DDA3937_RS13505	0.47	-0.6
3,076,501	-		DDA3937_RS13505	0.47	-1.2
3,076,530	+		DDA3937_RS13505	0.48	-0.8
3,076,530	+		DDA3937_RS13505	0.48	-0.9
3,076,530	+		DDA3937_RS13505	0.48	-2.3
3,076,531	-		DDA3937_RS13505	0.48	-1.8
3,076,531	-		DDA3937_RS13505	0.48	+0.1
3,076,644	+		DDA3937_RS13505	0.54	-2.1
3,076,679	+		DDA3937_RS13505	0.56	+0.5
3,076,679	+		DDA3937_RS13505	0.56	-1.3
3,076,680	-		DDA3937_RS13505	0.56	-0.5
3,076,680	-		DDA3937_RS13505	0.56	-0.7
3,076,882	+		DDA3937_RS13505	0.65	-1.9
3,076,883	-		DDA3937_RS13505	0.65	+0.6
3,076,883	-		DDA3937_RS13505	0.65	-0.8
3,076,883	-		DDA3937_RS13505	0.65	-0.8
3,076,883	-		DDA3937_RS13505	0.65	-0.0
3,076,910	+		DDA3937_RS13505	0.67	+1.2
3,076,911	-		DDA3937_RS13505	0.67	+0.3
3,076,911	-		DDA3937_RS13505	0.67	-0.7
3,076,923	+		DDA3937_RS13505	0.67	-1.4
3,076,923	+		DDA3937_RS13505	0.67	-1.0
3,076,923	+		DDA3937_RS13505	0.67	-0.6
3,076,924	-		DDA3937_RS13505	0.67	-0.9
3,076,924	-		DDA3937_RS13505	0.67	-0.4
3,076,924	-		DDA3937_RS13505	0.67	-0.4
3,076,924	-		DDA3937_RS13505	0.67	-0.7
3,076,924	-		DDA3937_RS13505	0.67	-2.6
3,076,929	+		DDA3937_RS13505	0.68	-2.4
3,076,930	-		DDA3937_RS13505	0.68	-2.2
3,076,930	-		DDA3937_RS13505	0.68	-0.9
3,076,932	+		DDA3937_RS13505	0.68	-0.6
3,076,932	+		DDA3937_RS13505	0.68	-0.8
3,076,932	+		DDA3937_RS13505	0.68	-1.9
3,076,932	+		DDA3937_RS13505	0.68	+0.3
3,076,933	-		DDA3937_RS13505	0.68	-1.8
3,076,933	-		DDA3937_RS13505	0.68	-1.0
3,076,933	-		DDA3937_RS13505	0.68	+1.2
3,076,933	-		DDA3937_RS13505	0.68	-1.9
3,076,955	+		DDA3937_RS13505	0.69	-0.7
3,076,961	+		DDA3937_RS13505	0.69	-1.3
3,076,962	-		DDA3937_RS13505	0.69	+1.6
3,076,962	-		DDA3937_RS13505	0.69	-1.0
3,077,001	-		DDA3937_RS13505	0.71	-0.0
3,077,016	-		DDA3937_RS13505	0.72	-2.1
3,077,016	-		DDA3937_RS13505	0.72	-1.8
3,077,023	+		DDA3937_RS13505	0.72	-0.1
3,077,129	+		DDA3937_RS13505	0.77	-0.7
3,077,142	-		DDA3937_RS13505	0.78	-0.8
3,077,192	+		DDA3937_RS13505	0.80	-0.8
3,077,192	+		DDA3937_RS13505	0.80	-0.5
3,077,192	+		DDA3937_RS13505	0.80	-0.6
3,077,193	-		DDA3937_RS13505	0.80	-0.8
3,077,193	-		DDA3937_RS13505	0.80	-2.3
3,077,193	-		DDA3937_RS13505	0.80	-1.8
3,077,193	-		DDA3937_RS13505	0.80	-1.5
3,077,228	+		DDA3937_RS13505	0.82	-1.2
3,077,229	-		DDA3937_RS13505	0.82	-2.0
3,077,415	-				-0.3
3,077,462	+				-2.6
3,077,463	-				-0.4
3,077,463	-				-1.6
3,077,463	-				-0.6
3,077,463	-				-1.1
3,077,463	-				-0.5
3,077,523	+				-0.3
3,077,523	+				-0.4
3,077,567	+				-0.5
3,077,567	+				-0.8
3,077,567	+				+0.2
3,077,568	-				-0.8
3,077,568	-				-1.4
3,077,650	+				-1.6
3,077,700	+				+0.2
3,077,700	+				+0.9
3,077,708	+				+1.0
3,077,741	+		DDA3937_RS13510	0.12	-1.0
3,077,741	+		DDA3937_RS13510	0.12	-0.7
3,077,741	+		DDA3937_RS13510	0.12	-2.4
3,077,742	-		DDA3937_RS13510	0.12	-1.4
3,077,743	+		DDA3937_RS13510	0.12	-1.1
3,077,775	+		DDA3937_RS13510	0.15	-1.4
3,077,776	-		DDA3937_RS13510	0.15	-0.6
3,077,783	+		DDA3937_RS13510	0.16	-1.7
3,077,784	-		DDA3937_RS13510	0.16	-1.1
3,077,821	+		DDA3937_RS13510	0.19	-1.0
3,077,823	+		DDA3937_RS13510	0.19	-2.1
3,077,823	+		DDA3937_RS13510	0.19	+1.2
3,077,823	+		DDA3937_RS13510	0.19	-0.8
3,077,823	+		DDA3937_RS13510	0.19	-1.5
3,077,823	+		DDA3937_RS13510	0.19	-1.7
3,077,823	+		DDA3937_RS13510	0.19	-1.5
3,077,824	-		DDA3937_RS13510	0.20	-0.8
3,077,824	-		DDA3937_RS13510	0.20	-1.6
3,077,824	-		DDA3937_RS13510	0.20	-0.4
3,077,824	-		DDA3937_RS13510	0.20	-1.2
3,077,824	-		DDA3937_RS13510	0.20	-0.8
3,077,861	-		DDA3937_RS13510	0.23	-1.8
3,077,861	-		DDA3937_RS13510	0.23	-0.3
3,077,915	+		DDA3937_RS13510	0.27	-0.3
3,077,915	+		DDA3937_RS13510	0.27	+0.5
3,077,915	+		DDA3937_RS13510	0.27	-1.0
3,077,915	+		DDA3937_RS13510	0.27	-1.3
3,077,915	+		DDA3937_RS13510	0.27	-1.3
3,077,915	+		DDA3937_RS13510	0.27	-0.7
3,077,915	+		DDA3937_RS13510	0.27	-0.7
3,077,915	+		DDA3937_RS13510	0.27	-0.4
3,077,915	+		DDA3937_RS13510	0.27	-1.7
3,077,916	-		DDA3937_RS13510	0.28	-1.5
3,077,916	-		DDA3937_RS13510	0.28	-0.8
3,077,920	+		DDA3937_RS13510	0.28	-1.6
3,077,921	-		DDA3937_RS13510	0.28	+0.2
3,077,921	-		DDA3937_RS13510	0.28	-0.5
3,077,921	-		DDA3937_RS13510	0.28	+0.9
3,077,934	-		DDA3937_RS13510	0.29	-0.5
3,077,934	-		DDA3937_RS13510	0.29	+0.2
3,077,950	-		DDA3937_RS13510	0.30	+2.4
3,077,950	-		DDA3937_RS13510	0.30	-0.4
3,077,950	-		DDA3937_RS13510	0.30	-0.0
3,078,088	-		DDA3937_RS13510	0.42	-0.9
3,078,088	-		DDA3937_RS13510	0.42	-0.4
3,078,099	+		DDA3937_RS13510	0.43	-0.1
3,078,100	-		DDA3937_RS13510	0.43	-1.1
3,078,100	-		DDA3937_RS13510	0.43	-1.6
3,078,102	+		DDA3937_RS13510	0.44	-3.1
3,078,102	+		DDA3937_RS13510	0.44	+0.1
3,078,104	-		DDA3937_RS13510	0.44	-0.7
3,078,112	+		DDA3937_RS13510	0.45	-2.4
3,078,112	+		DDA3937_RS13510	0.45	-2.7
3,078,113	-		DDA3937_RS13510	0.45	-0.3
3,078,113	-		DDA3937_RS13510	0.45	-0.4
3,078,243	+		DDA3937_RS13510	0.56	-2.3
3,078,243	+		DDA3937_RS13510	0.56	-1.0
3,078,243	+		DDA3937_RS13510	0.56	-0.3
3,078,244	-		DDA3937_RS13510	0.56	-1.1
3,078,244	-		DDA3937_RS13510	0.56	-0.7
3,078,244	-		DDA3937_RS13510	0.56	-0.6
3,078,274	-		DDA3937_RS13510	0.59	-0.4
3,078,309	+		DDA3937_RS13510	0.62	-1.4
3,078,309	+		DDA3937_RS13510	0.62	-3.8
3,078,313	+		DDA3937_RS13510	0.62	-1.5
3,078,313	+		DDA3937_RS13510	0.62	-1.1
3,078,325	+		DDA3937_RS13510	0.63	-0.9
3,078,325	+		DDA3937_RS13510	0.63	-0.5
3,078,325	+		DDA3937_RS13510	0.63	-0.7
3,078,326	-		DDA3937_RS13510	0.63	-2.2
3,078,326	-		DDA3937_RS13510	0.63	+0.9
3,078,326	-		DDA3937_RS13510	0.63	+0.4
3,078,326	-		DDA3937_RS13510	0.63	-0.4
3,078,326	-		DDA3937_RS13510	0.63	-0.8
3,078,342	+		DDA3937_RS13510	0.64	-1.3
3,078,342	+		DDA3937_RS13510	0.64	-0.8
3,078,342	+		DDA3937_RS13510	0.64	-1.0
3,078,342	+		DDA3937_RS13510	0.64	-1.4
3,078,543	+		DDA3937_RS13510	0.82	-1.5
3,078,573	+		DDA3937_RS13510	0.85	-1.6
3,078,573	+		DDA3937_RS13510	0.85	-0.3