Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS13485

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,072,493	-		DDA3937_RS13475	0.11	-3.5
3,072,500	-		DDA3937_RS13475	0.13	-2.4
3,072,518	+		DDA3937_RS13475	0.17	-1.1
3,072,518	+		DDA3937_RS13475	0.17	+0.5
3,072,519	-		DDA3937_RS13475	0.18	-2.4
3,072,519	-		DDA3937_RS13475	0.18	-0.2
3,072,519	-		DDA3937_RS13475	0.18	+0.7
3,072,584	+		DDA3937_RS13475	0.34	-0.8
3,072,584	+		DDA3937_RS13475	0.34	-0.7
3,072,584	+		DDA3937_RS13475	0.34	-0.8
3,072,584	+		DDA3937_RS13475	0.34	+0.2
3,072,584	+		DDA3937_RS13475	0.34	-2.5
3,072,585	-		DDA3937_RS13475	0.34	-0.2
3,072,620	+		DDA3937_RS13475	0.42	-1.8
3,072,666	+		DDA3937_RS13475	0.54	-1.0
3,072,667	-		DDA3937_RS13475	0.54	-1.2
3,072,667	-		DDA3937_RS13475	0.54	-1.4
3,072,838	-				-0.4
3,072,838	-				-1.8
3,072,840	+				-1.8
3,072,844	+				-1.8
3,072,844	+				-0.7
3,072,845	-				-0.6
3,072,866	+				-2.6
3,072,866	+				+0.2
3,072,866	+				-0.9
3,072,866	+				-1.3
3,072,866	+				-0.9
3,072,866	+				-0.5
3,072,866	+				-0.3
3,072,866	+				-0.9
3,072,867	-				-1.1
3,072,867	-				-0.9
3,072,867	-				-2.0
3,072,867	-				-0.4
3,072,868	+				+1.5
3,072,868	+				-0.4
3,072,868	+				-1.1
3,072,868	+				-0.5
3,072,868	+				-1.1
3,072,868	+				+0.2
3,072,868	+				-0.1
3,072,868	+				-0.1
3,072,868	+				-0.8
3,072,868	+				-0.5
3,072,868	+				-0.8
3,072,868	+				-1.6
3,072,868	+				-1.6
3,072,868	+				+1.0
3,072,869	-				-1.3
3,072,869	-				-1.6
3,072,869	-				-2.3
3,072,869	-				-2.5
3,072,869	-				-3.1
3,072,887	+				-0.9
3,072,887	+				-0.5
3,072,888	-				-1.2
3,072,908	-				-2.4
3,072,959	+		DDA3937_RS13480	0.17	-0.5
3,072,959	+		DDA3937_RS13480	0.17	-0.6
3,072,959	+		DDA3937_RS13480	0.17	-0.8
3,072,960	-		DDA3937_RS13480	0.18	-0.8
3,072,960	-		DDA3937_RS13480	0.18	-1.0
3,072,960	-		DDA3937_RS13480	0.18	-0.8
3,072,987	+		DDA3937_RS13480	0.24	-0.8
3,073,003	-		DDA3937_RS13480	0.28	-1.3
3,073,072	+		DDA3937_RS13480	0.44	-1.9
3,073,089	+		DDA3937_RS13480	0.48	-0.4
3,073,089	+		DDA3937_RS13480	0.48	-1.5
3,073,090	-		DDA3937_RS13480	0.49	-0.5
3,073,090	-		DDA3937_RS13480	0.49	-0.8
3,073,193	+		DDA3937_RS13480	0.73	-0.2
3,073,297	-				+2.2
3,073,328	+				-1.4
3,073,337	+				-0.1
3,073,337	+				-0.8
3,073,337	+				-1.4
3,073,342	+				+0.8
3,073,374	+				+0.4
3,073,374	+				-1.2
3,073,380	+				-1.0
3,073,380	+				-0.6
3,073,381	-				-0.9
3,073,393	+				+0.5
3,073,397	+				+0.9
3,073,398	-				-1.1
3,073,398	-				+1.2
3,073,398	-				+0.5
3,073,398	-				-0.6
3,073,398	-				-0.9
3,073,411	+				-0.3
3,073,411	+				-0.5
3,073,411	+				+0.5
3,073,412	-				-1.8
3,073,412	-				-0.9
3,073,419	+				-0.6
3,073,420	-				+0.0
3,073,430	+				-1.8
3,073,431	-				-0.6
3,073,431	-				-0.2
3,073,431	-				-1.0
3,073,433	+				-0.2
3,073,433	+				-0.6
3,073,433	+				-0.1
3,073,465	-				-1.7
3,073,465	-				-0.4
3,073,465	-				+1.2
3,073,465	-				-1.7
3,073,465	-				+0.2
3,073,465	-				-0.5
3,073,490	+				+0.2
3,073,494	+				-1.7
3,073,494	+				-1.6
3,073,494	+				-1.7
3,073,494	+				-0.3
3,073,495	-				-1.6
3,073,495	-				-0.6
3,073,495	-				-0.4
3,073,495	-				-0.9
3,073,495	-				+0.2
3,073,495	-				-1.8
3,073,588	+		DDA3937_RS13485	0.17	+0.0
3,073,609	+		DDA3937_RS13485	0.20	-0.1
3,073,609	+		DDA3937_RS13485	0.20	-1.8
3,073,609	+		DDA3937_RS13485	0.20	-1.2
3,073,609	+		DDA3937_RS13485	0.20	-1.0
3,073,610	-		DDA3937_RS13485	0.21	-2.4
3,073,610	-		DDA3937_RS13485	0.21	-1.6
3,073,752	+		DDA3937_RS13485	0.42	-1.1
3,073,752	+		DDA3937_RS13485	0.42	+1.5
3,073,753	-		DDA3937_RS13485	0.42	-0.9
3,073,769	+		DDA3937_RS13485	0.44	+0.3
3,073,769	+		DDA3937_RS13485	0.44	-1.3
3,073,769	+		DDA3937_RS13485	0.44	-0.5
3,073,769	+		DDA3937_RS13485	0.44	+0.7
3,073,769	+		DDA3937_RS13485	0.44	-1.3
3,073,769	+		DDA3937_RS13485	0.44	-1.0
3,073,769	+		DDA3937_RS13485	0.44	-3.0
3,073,769	+		DDA3937_RS13485	0.44	-1.4
3,073,769	+		DDA3937_RS13485	0.44	+0.5
3,073,769	+		DDA3937_RS13485	0.44	-0.9
3,073,770	-		DDA3937_RS13485	0.45	-1.0
3,073,770	-		DDA3937_RS13485	0.45	-2.7
3,073,770	-		DDA3937_RS13485	0.45	-2.2
3,073,770	-		DDA3937_RS13485	0.45	-0.6
3,073,770	-		DDA3937_RS13485	0.45	-1.9
3,073,770	-		DDA3937_RS13485	0.45	-0.8
3,074,021	-		DDA3937_RS13485	0.82	-0.8
3,074,095	-				-0.4
3,074,123	-				-2.5
3,074,138	+				+0.5
3,074,139	-				+1.0
3,074,147	-				-0.1
3,074,151	+				-2.0
3,074,151	+				-2.2
3,074,151	+				-2.2
3,074,151	+				+0.8
3,074,171	-				-2.1
3,074,177	+				-1.4
3,074,177	+				-0.0
3,074,177	+				+1.5
3,074,177	+				+0.0
3,074,177	+				+0.6
3,074,177	+				+0.8
3,074,177	+				-0.4
3,074,177	+				+0.1
3,074,177	+				+0.1
3,074,178	-				-1.4
3,074,178	-				-2.7
3,074,181	+				-0.1
3,074,181	+				+0.6
3,074,181	+				-0.1
3,074,181	+				+0.2
3,074,181	+				-1.5
3,074,182	-				-1.1
3,074,182	-				-0.4
3,074,194	+				+0.6
3,074,194	+				+0.5
3,074,207	+				-1.1
3,074,207	+				-1.4
3,074,281	+				+0.2
3,074,514	+		DDA3937_RS13490	0.76	-0.2
3,074,552	-		DDA3937_RS13490	0.89	-0.6
3,074,602	+				+0.1
3,074,603	-				-2.8
3,074,734	+		DDA3937_RS13495	0.33	-0.5
3,074,805	+		DDA3937_RS13495	0.49	-0.0
3,074,805	+		DDA3937_RS13495	0.49	-0.7
3,074,806	-		DDA3937_RS13495	0.50	-0.3
3,074,810	+		DDA3937_RS13495	0.50	-1.2
3,074,811	-		DDA3937_RS13495	0.51	-1.5
3,074,811	-		DDA3937_RS13495	0.51	+0.6
3,074,855	-		DDA3937_RS13495	0.61	-0.1
3,075,020	+				+0.5
3,075,048	+				-0.2
3,075,049	-				-2.2
3,075,056	+				-0.6
3,075,056	+				-0.4
3,075,056	+				-0.6
3,075,056	+				-1.1
3,075,056	+				-0.8
3,075,056	+				-0.0
3,075,057	-				-1.6
3,075,057	-				-1.7
3,075,057	-				-1.2
3,075,057	-				-0.1
3,075,057	-				+0.2
3,075,060	+				-2.2
3,075,061	-				-2.3
3,075,082	+				+0.5
3,075,083	-				-1.3
3,075,083	-				-2.8
3,075,083	-				-0.8
3,075,083	-				+1.5
3,075,083	-				-0.4
3,075,090	+				+0.6
3,075,091	-				+0.1
3,075,098	+				-0.6
3,075,099	-				-1.0
3,075,099	-				+1.2
3,075,102	+				-2.1
3,075,102	+				-0.1
3,075,102	+				-0.0
3,075,103	-				-0.3
3,075,103	-				-2.2
3,075,103	-				+0.3
3,075,103	-				-3.0
3,075,104	+				-0.0
3,075,104	+				+2.8
3,075,105	-				+0.0
3,075,105	-				+0.6