Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS13475

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,071,460	+		DDA3937_RS13465	0.80	-2.5
3,071,493	+		DDA3937_RS13465	0.83	-0.3
3,071,494	-		DDA3937_RS13465	0.83	-0.8
3,071,502	+		DDA3937_RS13465	0.84	-0.4
3,071,502	+		DDA3937_RS13465	0.84	+0.2
3,071,502	+		DDA3937_RS13465	0.84	+0.3
3,071,503	-		DDA3937_RS13465	0.84	-1.1
3,071,503	-		DDA3937_RS13465	0.84	-1.0
3,071,527	+		DDA3937_RS13465	0.86	+0.5
3,071,528	-		DDA3937_RS13465	0.86	-1.6
3,071,528	-		DDA3937_RS13465	0.86	-0.8
3,071,555	-		DDA3937_RS13465	0.88	-1.6
3,071,570	+		DDA3937_RS13465	0.89	-0.9
3,071,570	+		DDA3937_RS13465	0.89	-1.6
3,071,570	+		DDA3937_RS13465	0.89	-0.4
3,071,570	+		DDA3937_RS13465	0.89	-2.5
3,071,570	+		DDA3937_RS13465	0.89	-0.9
3,071,570	+		DDA3937_RS13465	0.89	-0.8
3,071,570	+		DDA3937_RS13465	0.89	-1.5
3,071,570	+		DDA3937_RS13465	0.89	-1.1
3,071,570	+		DDA3937_RS13465	0.89	-0.2
3,071,570	+		DDA3937_RS13465	0.89	-0.9
3,071,570	+		DDA3937_RS13465	0.89	+0.9
3,071,571	-		DDA3937_RS13465	0.89	-0.8
3,071,571	-		DDA3937_RS13465	0.89	+2.4
3,071,571	-		DDA3937_RS13465	0.89	-0.3
3,071,571	-		DDA3937_RS13465	0.89	-0.7
3,071,571	-		DDA3937_RS13465	0.89	-0.4
3,071,571	-		DDA3937_RS13465	0.89	-0.9
3,071,571	-		DDA3937_RS13465	0.89	-0.4
3,071,571	-		DDA3937_RS13465	0.89	-1.5
3,071,571	-		DDA3937_RS13465	0.89	+1.2
3,071,571	-		DDA3937_RS13465	0.89	+0.2
3,071,575	-		DDA3937_RS13465	0.90	-0.3
3,071,589	+				-0.8
3,071,589	+				-1.7
3,071,589	+				-1.1
3,071,589	+				-1.0
3,071,589	+				+0.3
3,071,590	-				-0.8
3,071,592	+				-0.1
3,071,592	+				-2.7
3,071,593	-				-1.5
3,071,697	+				-0.8
3,071,697	+				+0.5
3,071,698	-				-0.8
3,071,726	+				+0.8
3,071,726	+				-0.7
3,071,727	-				-0.8
3,071,750	+				-1.1
3,071,750	+				-0.3
3,071,750	+				-1.0
3,071,751	-				-1.5
3,071,751	-				+0.1
3,071,751	-				+1.2
3,071,752	+				-0.1
3,071,758	+				-0.1
3,071,758	+				-0.4
3,071,758	+				-1.4
3,071,759	-				+0.2
3,071,759	-				-1.3
3,071,779	+				-2.9
3,071,779	+				-1.5
3,071,779	+				-0.4
3,071,779	+				-1.9
3,071,779	+				-1.7
3,071,779	+				-0.8
3,071,779	+				-1.1
3,071,779	+				+0.4
3,071,779	+				-1.1
3,071,779	+				-0.4
3,071,780	-				-1.4
3,071,780	-				+0.0
3,071,780	-				-0.3
3,071,780	-				-0.4
3,071,780	-				-1.1
3,071,780	-				+0.2
3,071,780	-				+0.2
3,071,780	-				-0.6
3,071,780	-				-0.2
3,071,780	-				+1.2
3,071,780	-				-2.2
3,071,821	+				-1.1
3,071,858	+		DDA3937_RS13470	0.14	-1.1
3,071,859	-		DDA3937_RS13470	0.14	+1.0
3,071,859	-		DDA3937_RS13470	0.14	+0.2
3,071,864	+		DDA3937_RS13470	0.15	-2.5
3,071,864	+		DDA3937_RS13470	0.15	+1.5
3,071,864	+		DDA3937_RS13470	0.15	+0.2
3,071,865	-		DDA3937_RS13470	0.15	-0.6
3,071,879	-		DDA3937_RS13470	0.17	-1.3
3,071,879	-		DDA3937_RS13470	0.17	-1.0
3,071,881	+		DDA3937_RS13470	0.17	-0.5
3,071,881	+		DDA3937_RS13470	0.17	-0.6
3,071,882	-		DDA3937_RS13470	0.18	-0.6
3,071,922	+		DDA3937_RS13470	0.24	-0.0
3,071,922	+		DDA3937_RS13470	0.24	+0.8
3,071,922	+		DDA3937_RS13470	0.24	+1.1
3,071,922	+		DDA3937_RS13470	0.24	-2.0
3,071,922	+		DDA3937_RS13470	0.24	-3.0
3,071,922	+		DDA3937_RS13470	0.24	-1.1
3,071,923	-		DDA3937_RS13470	0.24	+0.5
3,071,923	-		DDA3937_RS13470	0.24	-0.0
3,071,923	-		DDA3937_RS13470	0.24	+1.2
3,071,923	-		DDA3937_RS13470	0.24	-0.8
3,071,923	-		DDA3937_RS13470	0.24	-1.8
3,071,923	-		DDA3937_RS13470	0.24	-1.4
3,071,923	-		DDA3937_RS13470	0.24	-1.6
3,071,923	-		DDA3937_RS13470	0.24	-2.1
3,071,923	-		DDA3937_RS13470	0.24	-1.3
3,071,923	-				-0.8
3,071,923	-		DDA3937_RS13470	0.24	-1.7
3,071,924	+		DDA3937_RS13470	0.24	-1.8
3,071,924	+		DDA3937_RS13470	0.24	-1.4
3,071,924	+		DDA3937_RS13470	0.24	+0.2
3,071,925	-		DDA3937_RS13470	0.24	-0.4
3,071,925	-		DDA3937_RS13470	0.24	+1.2
3,071,975	+		DDA3937_RS13470	0.31	-0.0
3,071,976	-		DDA3937_RS13470	0.32	-1.8
3,071,976	-		DDA3937_RS13470	0.32	-2.0
3,071,976	-		DDA3937_RS13470	0.32	+1.2
3,071,976	-		DDA3937_RS13470	0.32	+0.0
3,071,976	-		DDA3937_RS13470	0.32	-1.1
3,072,012	+		DDA3937_RS13470	0.37	-0.6
3,072,013	-				+0.2
3,072,022	+				+0.6
3,072,022	+		DDA3937_RS13470	0.38	-1.4
3,072,022	+		DDA3937_RS13470	0.38	-0.3
3,072,023	-		DDA3937_RS13470	0.39	-0.8
3,072,023	-		DDA3937_RS13470	0.39	-1.5
3,072,196	-		DDA3937_RS13470	0.64	-0.6
3,072,217	-		DDA3937_RS13470	0.67	-1.7
3,072,247	+		DDA3937_RS13470	0.72	-2.0
3,072,247	+		DDA3937_RS13470	0.72	-1.8
3,072,248	-		DDA3937_RS13470	0.72	+0.2
3,072,339	+		DDA3937_RS13470	0.86	-2.2
3,072,340	-		DDA3937_RS13470	0.86	-2.0
3,072,340	-		DDA3937_RS13470	0.86	+0.6
3,072,340	-		DDA3937_RS13470	0.86	+1.0
3,072,340	-		DDA3937_RS13470	0.86	-1.0
3,072,340	-		DDA3937_RS13470	0.86	-1.4
3,072,347	-		DDA3937_RS13470	0.87	-2.1
3,072,361	-		DDA3937_RS13470	0.89	+1.2
3,072,361	-		DDA3937_RS13470	0.89	-1.0
3,072,361	-		DDA3937_RS13470	0.89	-0.1
3,072,361	-		DDA3937_RS13470	0.89	-0.8
3,072,372	+				-1.6
3,072,399	+				-0.4
3,072,400	-				-0.9
3,072,400	-				-0.1
3,072,429	+				-0.3
3,072,463	+				+0.6
3,072,493	-		DDA3937_RS13475	0.11	-3.5
3,072,500	-		DDA3937_RS13475	0.13	-2.4
3,072,518	+		DDA3937_RS13475	0.17	-1.1
3,072,518	+		DDA3937_RS13475	0.17	+0.5
3,072,519	-		DDA3937_RS13475	0.18	-2.4
3,072,519	-		DDA3937_RS13475	0.18	-0.2
3,072,519	-		DDA3937_RS13475	0.18	+0.7
3,072,584	+		DDA3937_RS13475	0.34	-0.8
3,072,584	+		DDA3937_RS13475	0.34	-0.7
3,072,584	+		DDA3937_RS13475	0.34	-0.8
3,072,584	+		DDA3937_RS13475	0.34	+0.2
3,072,584	+		DDA3937_RS13475	0.34	-2.5
3,072,585	-		DDA3937_RS13475	0.34	-0.2
3,072,620	+		DDA3937_RS13475	0.42	-1.8
3,072,666	+		DDA3937_RS13475	0.54	-1.0
3,072,667	-		DDA3937_RS13475	0.54	-1.2
3,072,667	-		DDA3937_RS13475	0.54	-1.4
3,072,838	-				-0.4
3,072,838	-				-1.8
3,072,840	+				-1.8
3,072,844	+				-1.8
3,072,844	+				-0.7
3,072,845	-				-0.6
3,072,866	+				-2.6
3,072,866	+				+0.2
3,072,866	+				-0.9
3,072,866	+				-1.3
3,072,866	+				-0.9
3,072,866	+				-0.5
3,072,866	+				-0.3
3,072,866	+				-0.9
3,072,867	-				-1.1
3,072,867	-				-0.9
3,072,867	-				-2.0
3,072,867	-				-0.4
3,072,868	+				+1.5
3,072,868	+				-0.4
3,072,868	+				-1.1
3,072,868	+				-0.5
3,072,868	+				-1.1
3,072,868	+				+0.2
3,072,868	+				-0.1
3,072,868	+				-0.1
3,072,868	+				-0.8
3,072,868	+				-0.5
3,072,868	+				-0.8
3,072,868	+				-1.6
3,072,868	+				-1.6
3,072,868	+				+1.0
3,072,869	-				-1.3
3,072,869	-				-1.6
3,072,869	-				-2.3
3,072,869	-				-2.5
3,072,869	-				-3.1
3,072,887	+				-0.9
3,072,887	+				-0.5
3,072,888	-				-1.2
3,072,908	-				-2.4
3,072,959	+		DDA3937_RS13480	0.17	-0.5
3,072,959	+		DDA3937_RS13480	0.17	-0.6
3,072,959	+		DDA3937_RS13480	0.17	-0.8
3,072,960	-		DDA3937_RS13480	0.18	-0.8
3,072,960	-		DDA3937_RS13480	0.18	-1.0
3,072,960	-		DDA3937_RS13480	0.18	-0.8
3,072,987	+		DDA3937_RS13480	0.24	-0.8
3,073,003	-		DDA3937_RS13480	0.28	-1.3
3,073,072	+		DDA3937_RS13480	0.44	-1.9
3,073,089	+		DDA3937_RS13480	0.48	-0.4
3,073,089	+		DDA3937_RS13480	0.48	-1.5
3,073,090	-		DDA3937_RS13480	0.49	-0.5
3,073,090	-		DDA3937_RS13480	0.49	-0.8
3,073,193	+		DDA3937_RS13480	0.73	-0.2
3,073,297	-				+2.2
3,073,328	+				-1.4
3,073,337	+				-0.1
3,073,337	+				-0.8
3,073,337	+				-1.4
3,073,342	+				+0.8
3,073,374	+				+0.4
3,073,374	+				-1.2
3,073,380	+				-1.0
3,073,380	+				-0.6
3,073,381	-				-0.9
3,073,393	+				+0.5
3,073,397	+				+0.9
3,073,398	-				-1.1
3,073,398	-				+1.2
3,073,398	-				+0.5
3,073,398	-				-0.6
3,073,398	-				-0.9
3,073,411	+				-0.3
3,073,411	+				-0.5
3,073,411	+				+0.5
3,073,412	-				-1.8
3,073,412	-				-0.9
3,073,419	+				-0.6
3,073,420	-				+0.0
3,073,430	+				-1.8
3,073,431	-				-0.6
3,073,431	-				-0.2
3,073,431	-				-1.0
3,073,433	+				-0.2
3,073,433	+				-0.6
3,073,433	+				-0.1
3,073,465	-				-1.7
3,073,465	-				-0.4
3,073,465	-				+1.2
3,073,465	-				-1.7
3,073,465	-				+0.2
3,073,465	-				-0.5
3,073,490	+				+0.2
3,073,494	+				-1.7
3,073,494	+				-1.6
3,073,494	+				-1.7
3,073,494	+				-0.3
3,073,495	-				-1.6
3,073,495	-				-0.6
3,073,495	-				-0.4
3,073,495	-				-0.9
3,073,495	-				+0.2
3,073,495	-				-1.8
3,073,588	+		DDA3937_RS13485	0.17	+0.0
3,073,609	+		DDA3937_RS13485	0.20	-0.1
3,073,609	+		DDA3937_RS13485	0.20	-1.8
3,073,609	+		DDA3937_RS13485	0.20	-1.2
3,073,609	+		DDA3937_RS13485	0.20	-1.0
3,073,610	-		DDA3937_RS13485	0.21	-2.4
3,073,610	-		DDA3937_RS13485	0.21	-1.6
3,073,752	+		DDA3937_RS13485	0.42	-1.1
3,073,752	+		DDA3937_RS13485	0.42	+1.5
3,073,753	-		DDA3937_RS13485	0.42	-0.9
3,073,769	+		DDA3937_RS13485	0.44	+0.3
3,073,769	+		DDA3937_RS13485	0.44	-1.3
3,073,769	+		DDA3937_RS13485	0.44	-0.5
3,073,769	+		DDA3937_RS13485	0.44	+0.7
3,073,769	+		DDA3937_RS13485	0.44	-1.3
3,073,769	+		DDA3937_RS13485	0.44	-1.0
3,073,769	+		DDA3937_RS13485	0.44	-3.0
3,073,769	+		DDA3937_RS13485	0.44	-1.4
3,073,769	+		DDA3937_RS13485	0.44	+0.5
3,073,769	+		DDA3937_RS13485	0.44	-0.9
3,073,770	-		DDA3937_RS13485	0.45	-1.0
3,073,770	-		DDA3937_RS13485	0.45	-2.7
3,073,770	-		DDA3937_RS13485	0.45	-2.2
3,073,770	-		DDA3937_RS13485	0.45	-0.6
3,073,770	-		DDA3937_RS13485	0.45	-1.9
3,073,770	-		DDA3937_RS13485	0.45	-0.8