Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS13465

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,069,558	+		DDA3937_RS13455	0.83	-0.4
3,069,558	+		DDA3937_RS13455	0.83	+0.2
3,069,558	+		DDA3937_RS13455	0.83	-0.6
3,069,558	+		DDA3937_RS13455	0.83	-0.4
3,069,558	+		DDA3937_RS13455	0.83	+0.6
3,069,558	+		DDA3937_RS13455	0.83	-0.7
3,069,559	-		DDA3937_RS13455	0.83	+1.0
3,069,559	-		DDA3937_RS13455	0.83	-2.1
3,069,575	+		DDA3937_RS13455	0.85	-1.7
3,069,575	+		DDA3937_RS13455	0.85	-2.1
3,069,576	-		DDA3937_RS13455	0.85	-1.2
3,069,629	+				-1.4
3,069,630	-				-1.3
3,069,630	-				-2.4
3,069,631	+				+1.2
3,069,631	+				-1.5
3,069,631	+				+0.4
3,069,631	+				-0.6
3,069,631	+				-1.8
3,069,631	+				-0.0
3,069,631	+				-1.1
3,069,631	+				-0.5
3,069,632	-				-1.0
3,069,632	-				-0.8
3,069,632	-				-1.3
3,069,632	-				-0.4
3,069,632	-				-2.6
3,069,640	+				-0.5
3,069,640	+				-0.5
3,069,640	+				+0.6
3,069,641	-				-0.0
3,069,641	-				-0.5
3,069,643	+				-0.7
3,069,643	+				-1.5
3,069,643	+				-0.7
3,069,643	+				-0.4
3,069,643	+				-0.2
3,069,644	-				-1.2
3,069,644	-				+0.5
3,069,644	-				-0.0
3,069,644	-				-1.0
3,069,644	-				-2.4
3,069,680	+				-0.8
3,069,681	-				-1.0
3,069,722	+				-2.1
3,069,722	+				-1.0
3,069,722	+				+1.2
3,069,722	+				-1.0
3,069,723	-				-2.6
3,069,723	-				-3.0
3,069,723	-				-0.1
3,069,723	-				-1.5
3,069,736	+				+1.2
3,069,736	+				-0.8
3,069,756	+				-0.8
3,069,757	-				-2.1
3,069,840	+		DDA3937_RS13460	0.16	+0.2
3,069,840	+		DDA3937_RS13460	0.16	-2.1
3,069,840	+		DDA3937_RS13460	0.16	-1.8
3,069,841	-		DDA3937_RS13460	0.16	-1.1
3,069,841	-		DDA3937_RS13460	0.16	-0.3
3,069,862	+		DDA3937_RS13460	0.19	-2.4
3,069,898	+		DDA3937_RS13460	0.23	+1.7
3,069,898	+		DDA3937_RS13460	0.23	+0.0
3,070,069	-		DDA3937_RS13460	0.46	-3.0
3,070,071	+		DDA3937_RS13460	0.46	-2.6
3,070,071	+		DDA3937_RS13460	0.46	-0.2
3,070,071	+		DDA3937_RS13460	0.46	-0.8
3,070,072	-		DDA3937_RS13460	0.46	-1.1
3,070,072	-		DDA3937_RS13460	0.46	-1.9
3,070,072	-		DDA3937_RS13460	0.46	-1.4
3,070,072	-		DDA3937_RS13460	0.46	-0.3
3,070,072	-		DDA3937_RS13460	0.46	-0.5
3,070,156	-		DDA3937_RS13460	0.58	-1.8
3,070,167	+		DDA3937_RS13460	0.59	+0.4
3,070,168	-		DDA3937_RS13460	0.59	-0.1
3,070,179	+		DDA3937_RS13460	0.61	-0.3
3,070,180	-		DDA3937_RS13460	0.61	-2.0
3,070,180	-		DDA3937_RS13460	0.61	-2.1
3,070,181	+		DDA3937_RS13460	0.61	-0.9
3,070,181	+		DDA3937_RS13460	0.61	+0.8
3,070,181	+		DDA3937_RS13460	0.61	-1.6
3,070,182	-		DDA3937_RS13460	0.61	-1.2
3,070,182	-		DDA3937_RS13460	0.61	-1.5
3,070,182	-		DDA3937_RS13460	0.61	+0.2
3,070,182	-		DDA3937_RS13460	0.61	-0.1
3,070,182	-		DDA3937_RS13460	0.61	+0.4
3,070,182	-		DDA3937_RS13460	0.61	-2.9
3,070,182	-		DDA3937_RS13460	0.61	-0.8
3,070,260	-		DDA3937_RS13460	0.71	-0.8
3,070,260	-		DDA3937_RS13460	0.71	-1.5
3,070,260	-		DDA3937_RS13460	0.71	-0.8
3,070,303	+		DDA3937_RS13460	0.77	+0.2
3,070,304	-		DDA3937_RS13460	0.77	+0.2
3,070,304	-		DDA3937_RS13460	0.77	-1.0
3,070,304	-		DDA3937_RS13460	0.77	-0.2
3,070,304	-		DDA3937_RS13460	0.77	-0.5
3,070,304	-		DDA3937_RS13460	0.77	-1.3
3,070,315	-		DDA3937_RS13460	0.79	+1.0
3,070,315	-		DDA3937_RS13460	0.79	-1.7
3,070,315	-		DDA3937_RS13460	0.79	-1.0
3,070,405	-				-0.8
3,070,405	-				-0.7
3,070,405	-				+1.4
3,070,405	-				-2.4
3,070,460	+				-0.6
3,070,460	+				+0.2
3,070,460	+				-0.5
3,070,460	+				-0.5
3,070,460	+				-0.4
3,070,461	-				+0.0
3,070,461	-				-1.5
3,070,461	-				-0.8
3,070,461	-				-0.3
3,070,461	-				-1.8
3,070,461	-				-0.7
3,070,464	+				-0.8
3,070,495	+				-1.4
3,070,495	+				-1.4
3,070,496	-				-0.9
3,070,566	-				-0.2
3,070,566	-				+0.6
3,070,566	-				+0.1
3,070,570	-				-2.0
3,070,602	+				-1.6
3,070,609	-				-1.5
3,070,617	+				-1.1
3,070,711	+		DDA3937_RS13465	0.18	-1.4
3,070,711	+		DDA3937_RS13465	0.18	-2.1
3,070,711	+		DDA3937_RS13465	0.18	+0.2
3,070,711	+				+0.6
3,070,711	+		DDA3937_RS13465	0.18	-0.8
3,070,712	-		DDA3937_RS13465	0.18	+0.5
3,070,712	-		DDA3937_RS13465	0.18	-1.6
3,070,756	-		DDA3937_RS13465	0.21	-0.3
3,070,788	+		DDA3937_RS13465	0.24	+0.6
3,070,789	-		DDA3937_RS13465	0.24	-0.2
3,070,789	-		DDA3937_RS13465	0.24	-1.7
3,070,799	+		DDA3937_RS13465	0.25	-1.2
3,070,800	-		DDA3937_RS13465	0.25	+0.5
3,070,800	-		DDA3937_RS13465	0.25	-0.4
3,070,835	+		DDA3937_RS13465	0.28	-2.8
3,070,859	+		DDA3937_RS13465	0.30	-1.8
3,070,860	-		DDA3937_RS13465	0.30	-1.4
3,070,900	-				+1.2
3,070,914	+		DDA3937_RS13465	0.35	-3.0
3,070,971	+		DDA3937_RS13465	0.39	-1.8
3,070,977	+		DDA3937_RS13465	0.40	-0.4
3,070,978	-		DDA3937_RS13465	0.40	-1.1
3,071,072	+		DDA3937_RS13465	0.48	+0.4
3,071,072	+		DDA3937_RS13465	0.48	+0.6
3,071,072	+		DDA3937_RS13465	0.48	+0.2
3,071,072	+		DDA3937_RS13465	0.48	-0.0
3,071,072	+		DDA3937_RS13465	0.48	-1.7
3,071,073	-		DDA3937_RS13465	0.48	-1.3
3,071,073	-		DDA3937_RS13465	0.48	-1.1
3,071,073	-		DDA3937_RS13465	0.48	-1.2
3,071,088	+		DDA3937_RS13465	0.49	-0.4
3,071,108	+		DDA3937_RS13465	0.51	-3.6
3,071,108	+		DDA3937_RS13465	0.51	-2.2
3,071,109	-		DDA3937_RS13465	0.51	-2.0
3,071,109	-		DDA3937_RS13465	0.51	+0.6
3,071,121	+		DDA3937_RS13465	0.52	-0.6
3,071,121	+		DDA3937_RS13465	0.52	-1.8
3,071,121	+		DDA3937_RS13465	0.52	-1.8
3,071,122	-		DDA3937_RS13465	0.52	-1.2
3,071,122	-		DDA3937_RS13465	0.52	+1.0
3,071,122	-		DDA3937_RS13465	0.52	-0.4
3,071,139	+		DDA3937_RS13465	0.53	-0.5
3,071,139	+		DDA3937_RS13465	0.53	-2.9
3,071,140	-		DDA3937_RS13465	0.54	-1.2
3,071,144	+		DDA3937_RS13465	0.54	-0.3
3,071,144	+		DDA3937_RS13465	0.54	-0.7
3,071,145	-		DDA3937_RS13465	0.54	-1.1
3,071,145	-		DDA3937_RS13465	0.54	-1.3
3,071,145	-		DDA3937_RS13465	0.54	-0.5
3,071,145	-		DDA3937_RS13465	0.54	+0.2
3,071,145	-		DDA3937_RS13465	0.54	-2.6
3,071,145	-		DDA3937_RS13465	0.54	-0.4
3,071,151	+		DDA3937_RS13465	0.54	-0.1
3,071,152	-		DDA3937_RS13465	0.55	+0.2
3,071,152	-		DDA3937_RS13465	0.55	+0.0
3,071,154	+		DDA3937_RS13465	0.55	-1.2
3,071,154	+		DDA3937_RS13465	0.55	+0.3
3,071,154	+		DDA3937_RS13465	0.55	+0.0
3,071,154	+		DDA3937_RS13465	0.55	+0.4
3,071,155	-		DDA3937_RS13465	0.55	-1.7
3,071,155	-		DDA3937_RS13465	0.55	+1.0
3,071,155	-		DDA3937_RS13465	0.55	-0.3
3,071,155	-		DDA3937_RS13465	0.55	-0.6
3,071,163	+		DDA3937_RS13465	0.55	-0.4
3,071,163	+		DDA3937_RS13465	0.55	+2.5
3,071,163	+		DDA3937_RS13465	0.55	-1.4
3,071,164	-		DDA3937_RS13465	0.56	+1.0
3,071,164	-		DDA3937_RS13465	0.56	-0.5
3,071,165	+		DDA3937_RS13465	0.56	-1.0
3,071,165	+		DDA3937_RS13465	0.56	+0.2
3,071,165	+		DDA3937_RS13465	0.56	-2.6
3,071,165	+		DDA3937_RS13465	0.56	-0.8
3,071,165	+		DDA3937_RS13465	0.56	-1.6
3,071,165	+		DDA3937_RS13465	0.56	-0.4
3,071,166	-		DDA3937_RS13465	0.56	-1.3
3,071,166	-		DDA3937_RS13465	0.56	-1.1
3,071,166	-		DDA3937_RS13465	0.56	-0.8
3,071,166	-		DDA3937_RS13465	0.56	-0.1
3,071,175	+		DDA3937_RS13465	0.56	-0.9
3,071,175	+		DDA3937_RS13465	0.56	-2.7
3,071,175	+		DDA3937_RS13465	0.56	-1.1
3,071,175	+		DDA3937_RS13465	0.56	-0.0
3,071,175	+		DDA3937_RS13465	0.56	-0.2
3,071,175	+		DDA3937_RS13465	0.56	-2.5
3,071,175	+		DDA3937_RS13465	0.56	-1.8
3,071,176	-		DDA3937_RS13465	0.56	-1.4
3,071,176	-		DDA3937_RS13465	0.56	-1.6
3,071,176	-		DDA3937_RS13465	0.56	-2.0
3,071,176	-		DDA3937_RS13465	0.56	-1.4
3,071,176	-		DDA3937_RS13465	0.56	-1.4
3,071,176	-		DDA3937_RS13465	0.56	-2.2
3,071,176	-		DDA3937_RS13465	0.56	-0.9
3,071,176	-		DDA3937_RS13465	0.56	-1.2
3,071,178	+		DDA3937_RS13465	0.57	-0.5
3,071,179	-		DDA3937_RS13465	0.57	-0.8
3,071,179	-		DDA3937_RS13465	0.57	-0.2
3,071,179	-		DDA3937_RS13465	0.57	-0.8
3,071,379	+		DDA3937_RS13465	0.73	-0.4
3,071,388	+		DDA3937_RS13465	0.74	-0.1
3,071,388	+		DDA3937_RS13465	0.74	-0.7
3,071,409	+		DDA3937_RS13465	0.76	-0.5
3,071,416	-		DDA3937_RS13465	0.77	-1.8
3,071,416	-		DDA3937_RS13465	0.77	-2.3
3,071,416	-		DDA3937_RS13465	0.77	-3.3
3,071,417	+		DDA3937_RS13465	0.77	-1.1
3,071,417	+		DDA3937_RS13465	0.77	-1.0
3,071,417	+		DDA3937_RS13465	0.77	-0.1
3,071,417	+		DDA3937_RS13465	0.77	-0.4
3,071,417	+		DDA3937_RS13465	0.77	-2.4
3,071,417	+		DDA3937_RS13465	0.77	-2.7
3,071,417	+		DDA3937_RS13465	0.77	-0.1
3,071,418	-		DDA3937_RS13465	0.77	-0.1
3,071,418	-		DDA3937_RS13465	0.77	-0.6
3,071,418	-		DDA3937_RS13465	0.77	-2.3
3,071,418	-		DDA3937_RS13465	0.77	-1.3
3,071,418	-		DDA3937_RS13465	0.77	-1.2
3,071,418	-		DDA3937_RS13465	0.77	-0.7
3,071,418	-		DDA3937_RS13465	0.77	-1.6
3,071,419	+		DDA3937_RS13465	0.77	-2.2
3,071,419	+		DDA3937_RS13465	0.77	-1.1
3,071,419	+		DDA3937_RS13465	0.77	-1.1
3,071,419	+		DDA3937_RS13465	0.77	-0.9
3,071,419	+		DDA3937_RS13465	0.77	-0.7
3,071,419	+		DDA3937_RS13465	0.77	-0.3
3,071,419	+		DDA3937_RS13465	0.77	-1.0
3,071,419	+		DDA3937_RS13465	0.77	-0.8
3,071,420	-		DDA3937_RS13465	0.77	-0.1
3,071,420	-		DDA3937_RS13465	0.77	-1.6
3,071,420	-		DDA3937_RS13465	0.77	-1.8
3,071,420	-		DDA3937_RS13465	0.77	-0.7
3,071,420	-		DDA3937_RS13465	0.77	-3.9
3,071,420	-		DDA3937_RS13465	0.77	-0.9
3,071,420	-		DDA3937_RS13465	0.77	-1.3
3,071,420	-		DDA3937_RS13465	0.77	-1.8
3,071,420	-		DDA3937_RS13465	0.77	-0.8
3,071,420	-		DDA3937_RS13465	0.77	-0.1
3,071,420	-		DDA3937_RS13465	0.77	+1.2
3,071,460	+		DDA3937_RS13465	0.80	-2.5
3,071,493	+		DDA3937_RS13465	0.83	-0.3
3,071,494	-		DDA3937_RS13465	0.83	-0.8
3,071,502	+		DDA3937_RS13465	0.84	-0.4
3,071,502	+		DDA3937_RS13465	0.84	+0.2
3,071,502	+		DDA3937_RS13465	0.84	+0.3
3,071,503	-		DDA3937_RS13465	0.84	-1.1
3,071,503	-		DDA3937_RS13465	0.84	-1.0
3,071,527	+		DDA3937_RS13465	0.86	+0.5
3,071,528	-		DDA3937_RS13465	0.86	-1.6
3,071,528	-		DDA3937_RS13465	0.86	-0.8
3,071,555	-		DDA3937_RS13465	0.88	-1.6
3,071,570	+		DDA3937_RS13465	0.89	-0.9
3,071,570	+		DDA3937_RS13465	0.89	-1.6
3,071,570	+		DDA3937_RS13465	0.89	-0.4
3,071,570	+		DDA3937_RS13465	0.89	-2.5
3,071,570	+		DDA3937_RS13465	0.89	-0.9
3,071,570	+		DDA3937_RS13465	0.89	-0.8
3,071,570	+		DDA3937_RS13465	0.89	-1.5
3,071,570	+		DDA3937_RS13465	0.89	-1.1
3,071,570	+		DDA3937_RS13465	0.89	-0.2
3,071,570	+		DDA3937_RS13465	0.89	-0.9
3,071,570	+		DDA3937_RS13465	0.89	+0.9
3,071,571	-		DDA3937_RS13465	0.89	-0.8
3,071,571	-		DDA3937_RS13465	0.89	+2.4
3,071,571	-		DDA3937_RS13465	0.89	-0.3
3,071,571	-		DDA3937_RS13465	0.89	-0.7
3,071,571	-		DDA3937_RS13465	0.89	-0.4
3,071,571	-		DDA3937_RS13465	0.89	-0.9
3,071,571	-		DDA3937_RS13465	0.89	-0.4
3,071,571	-		DDA3937_RS13465	0.89	-1.5
3,071,571	-		DDA3937_RS13465	0.89	+1.2
3,071,571	-		DDA3937_RS13465	0.89	+0.2
3,071,575	-		DDA3937_RS13465	0.90	-0.3
3,071,589	+				-0.8
3,071,589	+				-1.7
3,071,589	+				-1.1
3,071,589	+				-1.0
3,071,589	+				+0.3
3,071,590	-				-0.8
3,071,592	+				-0.1
3,071,592	+				-2.7
3,071,593	-				-1.5
3,071,697	+				-0.8
3,071,697	+				+0.5
3,071,698	-				-0.8
3,071,726	+				+0.8
3,071,726	+				-0.7
3,071,727	-				-0.8
3,071,750	+				-1.1
3,071,750	+				-0.3
3,071,750	+				-1.0
3,071,751	-				-1.5
3,071,751	-				+0.1
3,071,751	-				+1.2
3,071,752	+				-0.1
3,071,758	+				-0.1
3,071,758	+				-0.4
3,071,758	+				-1.4
3,071,759	-				+0.2
3,071,759	-				-1.3
3,071,779	+				-2.9
3,071,779	+				-1.5
3,071,779	+				-0.4
3,071,779	+				-1.9
3,071,779	+				-1.7
3,071,779	+				-0.8
3,071,779	+				-1.1
3,071,779	+				+0.4
3,071,779	+				-1.1
3,071,779	+				-0.4
3,071,780	-				-1.4
3,071,780	-				+0.0
3,071,780	-				-0.3
3,071,780	-				-0.4
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3,072,372	+				-1.6
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3,072,620	+		DDA3937_RS13475	0.42	-1.8
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