Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS13450

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,067,068	+		DDA3937_RS13445	0.12	-1.6
3,067,126	-		DDA3937_RS13445	0.17	+0.1
3,067,164	-		DDA3937_RS13445	0.21	-0.9
3,067,269	-		DDA3937_RS13445	0.30	-0.4
3,067,274	+		DDA3937_RS13445	0.30	-0.4
3,067,311	-		DDA3937_RS13445	0.34	-1.6
3,067,311	-		DDA3937_RS13445	0.34	+0.6
3,067,376	+		DDA3937_RS13445	0.40	+0.2
3,067,467	+		DDA3937_RS13445	0.48	-1.2
3,067,484	+		DDA3937_RS13445	0.49	-0.3
3,067,484	+		DDA3937_RS13445	0.49	+0.2
3,067,484	+		DDA3937_RS13445	0.49	-2.3
3,067,502	+		DDA3937_RS13445	0.51	-0.7
3,067,502	+		DDA3937_RS13445	0.51	-1.1
3,067,542	-		DDA3937_RS13445	0.55	+0.5
3,067,564	-		DDA3937_RS13445	0.57	-0.6
3,067,564	-		DDA3937_RS13445	0.57	-0.7
3,067,634	-		DDA3937_RS13445	0.63	+0.8
3,067,634	-		DDA3937_RS13445	0.63	-1.2
3,067,634	-		DDA3937_RS13445	0.63	+0.6
3,067,634	-		DDA3937_RS13445	0.63	-1.1
3,067,716	+		DDA3937_RS13445	0.70	-1.4
3,067,716	+		DDA3937_RS13445	0.70	-0.4
3,067,717	-				+0.2
3,067,717	-		DDA3937_RS13445	0.70	-0.7
3,067,717	-		DDA3937_RS13445	0.70	-1.8
3,067,717	-		DDA3937_RS13445	0.70	-1.2
3,067,845	-		DDA3937_RS13445	0.82	-1.3
3,067,906	-		DDA3937_RS13445	0.87	-1.6
3,067,918	+		DDA3937_RS13445	0.88	-0.1
3,067,935	-				-0.4
3,068,048	+				-0.7
3,068,048	+				+0.4
3,068,048	+				-0.9
3,068,048	+				-0.5
3,068,048	+				-1.2
3,068,048	+				+0.2
3,068,048	+				+1.2
3,068,048	+				-0.4
3,068,049	-				-1.1
3,068,049	-				-0.5
3,068,049	-				-0.0
3,068,049	-				-1.3
3,068,049	-				-0.4
3,068,049	-				-1.5
3,068,049	-				-1.9
3,068,049	-				-1.1
3,068,049	-				-1.2
3,068,049	-				-1.9
3,068,049	-				-1.7
3,068,049	-				-2.4
3,068,049	-				+1.2
3,068,063	+				-1.2
3,068,079	+				-0.9
3,068,126	+				-0.6
3,068,127	-				-0.3
3,068,127	-				-2.1
3,068,127	-				-1.5
3,068,141	+		DDA3937_RS13450	0.11	-2.0
3,068,141	+		DDA3937_RS13450	0.11	+1.2
3,068,141	+		DDA3937_RS13450	0.11	-0.8
3,068,142	-		DDA3937_RS13450	0.11	-0.4
3,068,142	-		DDA3937_RS13450	0.11	-1.4
3,068,142	-		DDA3937_RS13450	0.11	-1.4
3,068,142	-		DDA3937_RS13450	0.11	-1.3
3,068,142	-		DDA3937_RS13450	0.11	-0.6
3,068,148	+		DDA3937_RS13450	0.12	-1.1
3,068,196	+		DDA3937_RS13450	0.19	+0.1
3,068,196	+		DDA3937_RS13450	0.19	-2.5
3,068,196	+		DDA3937_RS13450	0.19	-1.2
3,068,196	+		DDA3937_RS13450	0.19	-0.8
3,068,196	+		DDA3937_RS13450	0.19	-4.7
3,068,197	-		DDA3937_RS13450	0.19	-1.1
3,068,197	-		DDA3937_RS13450	0.19	-2.4
3,068,197	-		DDA3937_RS13450	0.19	-1.1
3,068,229	+		DDA3937_RS13450	0.23	-1.5
3,068,247	+		DDA3937_RS13450	0.26	+0.2
3,068,248	-		DDA3937_RS13450	0.26	+0.0
3,068,338	-				+0.2
3,068,338	-		DDA3937_RS13450	0.38	-0.9
3,068,338	-				-0.4
3,068,539	+		DDA3937_RS13450	0.67	-2.5
3,068,540	-		DDA3937_RS13450	0.67	+0.7
3,068,582	+		DDA3937_RS13450	0.73	-0.5
3,068,582	+		DDA3937_RS13450	0.73	-0.9
3,068,582	+		DDA3937_RS13450	0.73	-0.6
3,068,582	+		DDA3937_RS13450	0.73	-1.1
3,068,582	+		DDA3937_RS13450	0.73	-0.9
3,068,582	+		DDA3937_RS13450	0.73	-1.5
3,068,582	+		DDA3937_RS13450	0.73	-1.7
3,068,582	+		DDA3937_RS13450	0.73	+0.4
3,068,582	+		DDA3937_RS13450	0.73	+0.9
3,068,583	-		DDA3937_RS13450	0.73	-0.8
3,068,583	-		DDA3937_RS13450	0.73	-1.8
3,068,583	-				+0.2
3,068,583	-		DDA3937_RS13450	0.73	-0.5
3,068,626	-		DDA3937_RS13450	0.79	-0.6
3,068,633	-		DDA3937_RS13450	0.80	-0.8
3,068,686	+		DDA3937_RS13450	0.87	-0.1
3,068,686	+		DDA3937_RS13450	0.87	+0.0
3,068,686	+		DDA3937_RS13450	0.87	+0.2
3,068,686	+		DDA3937_RS13450	0.87	-0.1
3,068,686	+		DDA3937_RS13450	0.87	-0.2
3,068,686	+		DDA3937_RS13450	0.87	-2.1
3,068,686	+		DDA3937_RS13450	0.87	-0.2
3,068,686	+		DDA3937_RS13450	0.87	-1.1
3,068,686	+		DDA3937_RS13450	0.87	-1.6
3,068,686	+		DDA3937_RS13450	0.87	-2.3
3,068,686	+		DDA3937_RS13450	0.87	-1.1
3,068,687	-		DDA3937_RS13450	0.87	-1.1
3,068,687	-		DDA3937_RS13450	0.87	-1.7
3,068,687	-		DDA3937_RS13450	0.87	-2.1
3,068,687	-		DDA3937_RS13450	0.87	-0.0
3,068,687	-		DDA3937_RS13450	0.87	-1.2
3,068,687	-		DDA3937_RS13450	0.87	-2.1
3,068,687	-		DDA3937_RS13450	0.87	+0.2
3,068,687	-		DDA3937_RS13450	0.87	-1.0
3,068,688	+		DDA3937_RS13450	0.87	-3.0
3,068,688	+		DDA3937_RS13450	0.87	-0.6
3,068,688	+		DDA3937_RS13450	0.87	-1.8
3,068,689	-		DDA3937_RS13450	0.87	-1.4
3,068,689	-		DDA3937_RS13450	0.87	+0.2
3,068,689	-		DDA3937_RS13450	0.87	+0.2
3,068,689	-		DDA3937_RS13450	0.87	-1.0
3,068,689	-		DDA3937_RS13450	0.87	-0.5
3,068,689	-		DDA3937_RS13450	0.87	-0.6
3,068,689	-		DDA3937_RS13450	0.87	-1.3
3,068,689	-		DDA3937_RS13450	0.87	-0.4
3,068,689	-		DDA3937_RS13450	0.87	-0.9
3,068,690	+		DDA3937_RS13450	0.88	-1.7
3,068,691	-		DDA3937_RS13450	0.88	-0.9
3,068,691	-		DDA3937_RS13450	0.88	-0.7
3,068,691	-		DDA3937_RS13450	0.88	+0.2
3,068,691	-		DDA3937_RS13450	0.88	-1.1
3,068,710	+				-1.5
3,068,711	-				+1.2
3,068,723	+				-1.5
3,068,723	+				-1.4
3,068,724	-				-2.0
3,068,813	+				-0.7
3,068,813	+				-0.4
3,068,814	-				+1.6
3,068,821	+				-0.8
3,068,821	+				-0.2
3,068,821	+				-1.5
3,068,821	+				-0.9
3,068,822	-				+1.2
3,068,822	-				-2.0
3,068,885	+				-0.8
3,068,885	+				-0.1
3,068,885	+				+0.6
3,068,885	+				-0.8
3,068,885	+				-0.5
3,068,886	-				-0.7
3,068,889	+				-1.2
3,068,890	-				+0.3
3,068,890	-				-0.9
3,068,890	-				-0.1
3,069,051	+		DDA3937_RS13455	0.18	+0.2
3,069,121	-		DDA3937_RS13455	0.27	+0.8
3,069,166	+		DDA3937_RS13455	0.32	-1.0
3,069,166	+		DDA3937_RS13455	0.32	-0.5
3,069,166	+		DDA3937_RS13455	0.32	+0.6
3,069,167	-		DDA3937_RS13455	0.33	-3.0
3,069,167	-		DDA3937_RS13455	0.33	-1.6
3,069,167	-		DDA3937_RS13455	0.33	-1.1
3,069,167	-		DDA3937_RS13455	0.33	-0.2
3,069,175	+		DDA3937_RS13455	0.34	-0.6
3,069,218	+		DDA3937_RS13455	0.39	-0.8
3,069,218	+		DDA3937_RS13455	0.39	+1.2
3,069,219	-		DDA3937_RS13455	0.39	-1.2
3,069,354	+		DDA3937_RS13455	0.56	-0.4
3,069,354	+		DDA3937_RS13455	0.56	-1.2
3,069,355	-		DDA3937_RS13455	0.57	+0.3
3,069,355	-		DDA3937_RS13455	0.57	-1.0
3,069,355	-		DDA3937_RS13455	0.57	-1.4
3,069,355	-		DDA3937_RS13455	0.57	-1.5
3,069,355	-		DDA3937_RS13455	0.57	-1.5
3,069,451	+		DDA3937_RS13455	0.69	-0.0
3,069,558	+		DDA3937_RS13455	0.83	-0.4
3,069,558	+		DDA3937_RS13455	0.83	+0.2
3,069,558	+		DDA3937_RS13455	0.83	-0.6
3,069,558	+		DDA3937_RS13455	0.83	-0.4
3,069,558	+		DDA3937_RS13455	0.83	+0.6
3,069,558	+		DDA3937_RS13455	0.83	-0.7
3,069,559	-		DDA3937_RS13455	0.83	+1.0
3,069,559	-		DDA3937_RS13455	0.83	-2.1
3,069,575	+		DDA3937_RS13455	0.85	-1.7
3,069,575	+		DDA3937_RS13455	0.85	-2.1
3,069,576	-		DDA3937_RS13455	0.85	-1.2
3,069,629	+				-1.4
3,069,630	-				-1.3
3,069,630	-				-2.4
3,069,631	+				+1.2
3,069,631	+				-1.5
3,069,631	+				+0.4
3,069,631	+				-0.6
3,069,631	+				-1.8
3,069,631	+				-0.0
3,069,631	+				-1.1
3,069,631	+				-0.5
3,069,632	-				-1.0
3,069,632	-				-0.8
3,069,632	-				-1.3
3,069,632	-				-0.4
3,069,632	-				-2.6
3,069,640	+				-0.5
3,069,640	+				-0.5
3,069,640	+				+0.6
3,069,641	-				-0.0
3,069,641	-				-0.5
3,069,643	+				-0.7
3,069,643	+				-1.5
3,069,643	+				-0.7
3,069,643	+				-0.4
3,069,643	+				-0.2
3,069,644	-				-1.2
3,069,644	-				+0.5
3,069,644	-				-0.0
3,069,644	-				-1.0
3,069,644	-				-2.4
3,069,680	+				-0.8
3,069,681	-				-1.0
3,069,722	+				-2.1
3,069,722	+				-1.0
3,069,722	+				+1.2
3,069,722	+				-1.0
3,069,723	-				-2.6
3,069,723	-				-3.0
3,069,723	-				-0.1
3,069,723	-				-1.5
3,069,736	+				+1.2
3,069,736	+				-0.8
3,069,756	+				-0.8
3,069,757	-				-2.1