Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS13415

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,059,994	-		DDA3937_RS13400	0.89	-0.8
3,060,007	+				-0.8
3,060,007	+				-0.6
3,060,008	-				-1.5
3,060,012	+				+0.8
3,060,012	+				-1.0
3,060,013	-				-1.3
3,060,017	+				+0.5
3,060,017	+				-2.2
3,060,017	+				-1.9
3,060,017	+				-0.9
3,060,018	-				+0.2
3,060,018	-				-0.1
3,060,018	-				-1.1
3,060,018	-				-3.4
3,060,018	-				-1.0
3,060,018	-				-1.8
3,060,018	-				-2.3
3,060,028	+				-2.8
3,060,028	+				+0.5
3,060,029	-				-1.7
3,060,029	-				+3.4
3,060,160	+		DDA3937_RS13405	0.16	-0.7
3,060,160	+		DDA3937_RS13405	0.16	-1.9
3,060,160	+		DDA3937_RS13405	0.16	-2.8
3,060,160	+		DDA3937_RS13405	0.16	-0.5
3,060,161	-		DDA3937_RS13405	0.16	-0.3
3,060,208	+		DDA3937_RS13405	0.27	-1.6
3,060,209	-		DDA3937_RS13405	0.27	-1.2
3,060,257	-		DDA3937_RS13405	0.39	-1.0
3,060,288	+		DDA3937_RS13405	0.46	-1.7
3,060,288	+		DDA3937_RS13405	0.46	-1.4
3,060,289	-		DDA3937_RS13405	0.47	-1.9
3,060,289	-				+2.9
3,060,289	-		DDA3937_RS13405	0.47	-1.3
3,060,295	-		DDA3937_RS13405	0.48	-0.6
3,060,400	+		DDA3937_RS13405	0.73	-1.7
3,060,407	+		DDA3937_RS13405	0.75	-0.1
3,060,449	+		DDA3937_RS13405	0.85	-0.4
3,060,449	+		DDA3937_RS13405	0.85	-1.8
3,060,449	+		DDA3937_RS13405	0.85	-1.4
3,060,449	+		DDA3937_RS13405	0.85	-0.8
3,060,449	+		DDA3937_RS13405	0.85	-0.8
3,060,450	-		DDA3937_RS13405	0.85	-2.9
3,060,450	-		DDA3937_RS13405	0.85	-2.6
3,060,450	-		DDA3937_RS13405	0.85	-1.8
3,060,450	-		DDA3937_RS13405	0.85	-3.6
3,060,456	+		DDA3937_RS13405	0.87	+1.0
3,060,456	+		DDA3937_RS13405	0.87	-0.6
3,060,456	+		DDA3937_RS13405	0.87	-0.2
3,060,457	-		DDA3937_RS13405	0.87	-1.3
3,060,457	-		DDA3937_RS13405	0.87	+1.4
3,060,457	-		DDA3937_RS13405	0.87	-0.5
3,060,457	-		DDA3937_RS13405	0.87	-1.2
3,060,460	+		DDA3937_RS13405	0.88	+0.3
3,060,461	-		DDA3937_RS13405	0.88	-2.4
3,060,461	-		DDA3937_RS13405	0.88	-0.6
3,060,461	-		DDA3937_RS13405	0.88	-0.7
3,060,461	-		DDA3937_RS13405	0.88	-0.4
3,060,461	-		DDA3937_RS13405	0.88	+0.7
3,060,461	-		DDA3937_RS13405	0.88	+0.2
3,060,461	-		DDA3937_RS13405	0.88	-1.1
3,060,470	-				-1.8
3,060,473	-				-0.8
3,060,473	-				-0.9
3,060,475	+				-0.3
3,060,490	+				+1.2
3,060,490	+				-2.0
3,060,491	-				-0.4
3,060,491	-				-1.0
3,060,501	+				-0.2
3,060,576	+		DDA3937_RS13410	0.16	-1.5
3,060,593	+		DDA3937_RS13410	0.20	-0.8
3,060,593	+		DDA3937_RS13410	0.20	+0.2
3,060,659	+		DDA3937_RS13410	0.35	-2.7
3,060,686	+		DDA3937_RS13410	0.42	-0.6
3,060,696	+		DDA3937_RS13410	0.44	+0.0
3,060,697	-		DDA3937_RS13410	0.45	-0.7
3,060,697	-		DDA3937_RS13410	0.45	-0.2
3,060,744	+		DDA3937_RS13410	0.56	+0.1
3,060,744	+		DDA3937_RS13410	0.56	-2.3
3,060,745	-		DDA3937_RS13410	0.56	-2.1
3,060,749	+				+2.5
3,060,749	+		DDA3937_RS13410	0.57	-0.8
3,060,750	-		DDA3937_RS13410	0.57	-1.4
3,060,750	-		DDA3937_RS13410	0.57	-1.3
3,060,750	-		DDA3937_RS13410	0.57	-0.5
3,060,769	-		DDA3937_RS13410	0.62	-1.4
3,060,779	+		DDA3937_RS13410	0.64	-0.8
3,060,779	+		DDA3937_RS13410	0.64	-0.1
3,060,779	+		DDA3937_RS13410	0.64	-0.9
3,060,779	+		DDA3937_RS13410	0.64	-1.4
3,060,780	-		DDA3937_RS13410	0.65	-1.4
3,060,780	-		DDA3937_RS13410	0.65	-1.3
3,060,780	-		DDA3937_RS13410	0.65	-0.3
3,060,780	-		DDA3937_RS13410	0.65	-1.7
3,060,780	-		DDA3937_RS13410	0.65	-0.5
3,060,780	-		DDA3937_RS13410	0.65	-0.8
3,060,780	-		DDA3937_RS13410	0.65	+0.7
3,060,929	+				-0.8
3,060,930	-				-1.2
3,060,930	-				-1.8
3,060,930	-				-1.5
3,060,930	-				-0.9
3,060,973	+				-2.5
3,060,973	+				-1.4
3,060,973	+				-1.3
3,060,973	+				+0.1
3,060,973	+				+0.6
3,060,973	+				-0.7
3,060,974	-				-0.5
3,060,974	-				-0.4
3,060,974	-				-0.6
3,060,974	-				-0.4
3,060,992	+				-1.1
3,060,992	+				-1.0
3,060,993	-				-0.4
3,060,993	-				-0.8
3,060,993	-				-0.8
3,060,993	-				-0.8
3,060,993	-				+1.0
3,061,115	-		DDA3937_RS13415	0.21	-0.2
3,061,132	+		DDA3937_RS13415	0.23	-0.8
3,061,132	+		DDA3937_RS13415	0.23	-3.1
3,061,132	+		DDA3937_RS13415	0.23	-1.0
3,061,133	-		DDA3937_RS13415	0.23	-0.8
3,061,154	+		DDA3937_RS13415	0.26	-2.5
3,061,238	+		DDA3937_RS13415	0.37	-0.4
3,061,238	+		DDA3937_RS13415	0.37	-1.3
3,061,239	-		DDA3937_RS13415	0.37	-1.4
3,061,287	+		DDA3937_RS13415	0.44	-1.0
3,061,287	+		DDA3937_RS13415	0.44	-0.8
3,061,288	-		DDA3937_RS13415	0.44	-0.5
3,061,288	-		DDA3937_RS13415	0.44	+1.2
3,061,288	-		DDA3937_RS13415	0.44	-0.6
3,061,373	+		DDA3937_RS13415	0.56	-1.5
3,061,373	+		DDA3937_RS13415	0.56	-1.3
3,061,374	-		DDA3937_RS13415	0.56	+1.6
3,061,374	-		DDA3937_RS13415	0.56	-1.2
3,061,402	+		DDA3937_RS13415	0.59	-0.8
3,061,402	+		DDA3937_RS13415	0.59	-1.1
3,061,468	+		DDA3937_RS13415	0.68	-0.9
3,061,482	+		DDA3937_RS13415	0.70	+0.4
3,061,482	+		DDA3937_RS13415	0.70	+0.4
3,061,482	+		DDA3937_RS13415	0.70	-0.8
3,061,482	+		DDA3937_RS13415	0.70	-1.8
3,061,483	-		DDA3937_RS13415	0.70	-0.2
3,061,483	-		DDA3937_RS13415	0.70	-0.8
3,061,483	-		DDA3937_RS13415	0.70	-0.8
3,061,483	-		DDA3937_RS13415	0.70	-2.0
3,061,483	-		DDA3937_RS13415	0.70	-2.6
3,061,483	-		DDA3937_RS13415	0.70	-0.4
3,061,488	-		DDA3937_RS13415	0.71	-2.8
3,061,586	+		DDA3937_RS13415	0.84	-1.8
3,061,587	-		DDA3937_RS13415	0.85	-0.3
3,061,692	+				-0.6
3,061,692	+				-2.1
3,061,692	+				-0.9
3,061,692	+				-0.4
3,061,693	-				-0.8
3,061,693	-				-0.8
3,061,694	+				-0.7
3,061,694	+				+0.1
3,061,694	+				+0.1
3,061,694	+				-0.8
3,061,695	-				-1.9
3,061,698	+				+0.1
3,061,698	+				-0.0
3,061,743	+				-0.6
3,061,744	-				-1.2
3,061,769	+				-0.9
3,061,770	-				-1.1
3,061,770	-				+0.5
3,061,775	-		DDA3937_RS13420	0.11	-0.8
3,061,775	-		DDA3937_RS13420	0.11	+0.4
3,061,790	+		DDA3937_RS13420	0.17	-1.1
3,061,791	-		DDA3937_RS13420	0.17	-2.6
3,061,846	-		DDA3937_RS13420	0.38	-1.8
3,061,969	+		DDA3937_RS13420	0.83	-1.7
3,061,969	+		DDA3937_RS13420	0.83	-2.6
3,061,969	+		DDA3937_RS13420	0.83	-1.2
3,061,969	+		DDA3937_RS13420	0.83	-0.8
3,061,969	+		DDA3937_RS13420	0.83	-0.4
3,061,969	+		DDA3937_RS13420	0.83	+0.5
3,061,970	-		DDA3937_RS13420	0.84	-1.4
3,061,970	-		DDA3937_RS13420	0.84	-1.0
3,061,971	+		DDA3937_RS13420	0.84	-1.4
3,061,971	+		DDA3937_RS13420	0.84	-1.5
3,061,971	+		DDA3937_RS13420	0.84	-0.5
3,061,971	+		DDA3937_RS13420	0.84	-3.1
3,061,972	-		DDA3937_RS13420	0.84	-1.1
3,061,972	-		DDA3937_RS13420	0.84	-1.5
3,061,972	-		DDA3937_RS13420	0.84	+0.8
3,061,972	-		DDA3937_RS13420	0.84	-1.1
3,061,972	-		DDA3937_RS13420	0.84	-1.7
3,061,972	-		DDA3937_RS13420	0.84	+0.6
3,061,972	-		DDA3937_RS13420	0.84	-0.5
3,062,012	-				-0.0
3,062,093	+				-1.4
3,062,093	+				-1.7
3,062,093	+				+0.1
3,062,093	+				+1.0
3,062,097	-		DDA3937_RS13425	0.10	-1.1
3,062,109	-		DDA3937_RS13425	0.12	+0.2
3,062,127	-		DDA3937_RS13425	0.14	-0.8
3,062,127	-		DDA3937_RS13425	0.14	-0.3
3,062,153	-		DDA3937_RS13425	0.17	-0.8
3,062,210	-		DDA3937_RS13425	0.25	-1.4
3,062,236	+		DDA3937_RS13425	0.28	-0.4
3,062,237	-		DDA3937_RS13425	0.28	-1.5
3,062,237	-		DDA3937_RS13425	0.28	-0.6
3,062,254	+		DDA3937_RS13425	0.30	-0.2
3,062,254	+		DDA3937_RS13425	0.30	-1.4
3,062,348	+		DDA3937_RS13425	0.42	-0.6
3,062,419	+		DDA3937_RS13425	0.51	-1.4
3,062,420	-		DDA3937_RS13425	0.52	-1.1
3,062,420	-		DDA3937_RS13425	0.52	-0.4
3,062,446	+		DDA3937_RS13425	0.55	+0.2
3,062,446	+		DDA3937_RS13425	0.55	+0.2
3,062,446	+		DDA3937_RS13425	0.55	-1.2
3,062,446	+		DDA3937_RS13425	0.55	-2.0
3,062,446	+		DDA3937_RS13425	0.55	-0.5
3,062,446	+		DDA3937_RS13425	0.55	-1.4
3,062,447	-		DDA3937_RS13425	0.55	-0.7
3,062,447	-		DDA3937_RS13425	0.55	+0.9
3,062,447	-		DDA3937_RS13425	0.55	+0.4
3,062,447	-		DDA3937_RS13425	0.55	-0.6
3,062,447	-		DDA3937_RS13425	0.55	-1.8
3,062,447	-		DDA3937_RS13425	0.55	-1.4
3,062,447	-		DDA3937_RS13425	0.55	-1.3
3,062,504	+		DDA3937_RS13425	0.62	+0.2
3,062,505	-		DDA3937_RS13425	0.62	-1.8
3,062,518	+		DDA3937_RS13425	0.64	-0.8
3,062,519	-		DDA3937_RS13425	0.64	-0.9
3,062,519	-		DDA3937_RS13425	0.64	-2.6
3,062,519	-		DDA3937_RS13425	0.64	+0.9
3,062,522	+		DDA3937_RS13425	0.65	+2.3
3,062,522	+		DDA3937_RS13425	0.65	-1.8
3,062,522	+		DDA3937_RS13425	0.65	-2.6
3,062,522	+		DDA3937_RS13425	0.65	+0.5
3,062,522	+		DDA3937_RS13425	0.65	-1.1
3,062,522	+		DDA3937_RS13425	0.65	-0.2
3,062,522	+		DDA3937_RS13425	0.65	-0.6
3,062,523	-		DDA3937_RS13425	0.65	-1.5
3,062,523	-		DDA3937_RS13425	0.65	-2.0
3,062,523	-		DDA3937_RS13425	0.65	-0.6
3,062,523	-		DDA3937_RS13425	0.65	-1.6
3,062,551	+		DDA3937_RS13425	0.68	-1.4
3,062,552	-		DDA3937_RS13425	0.68	-2.0
3,062,552	-		DDA3937_RS13425	0.68	-1.1
3,062,594	-		DDA3937_RS13425	0.74	-1.5
3,062,594	-		DDA3937_RS13425	0.74	-3.3
3,062,603	+		DDA3937_RS13425	0.75	-1.1
3,062,624	-		DDA3937_RS13425	0.78	-1.2
3,062,648	-		DDA3937_RS13425	0.81	-1.5