Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS13395

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,057,735	+		DDA3937_RS13390	0.45	-2.1
3,057,738	+		DDA3937_RS13390	0.46	-0.9
3,057,738	+		DDA3937_RS13390	0.46	-0.6
3,057,768	+		DDA3937_RS13390	0.48	-1.6
3,057,768	+		DDA3937_RS13390	0.48	-0.1
3,057,769	-		DDA3937_RS13390	0.48	-0.1
3,057,825	+		DDA3937_RS13390	0.52	-0.3
3,057,825	+		DDA3937_RS13390	0.52	+0.1
3,057,825	+		DDA3937_RS13390	0.52	-0.2
3,057,826	-		DDA3937_RS13390	0.52	-0.9
3,057,826	-		DDA3937_RS13390	0.52	-2.6
3,057,826	-		DDA3937_RS13390	0.52	-0.8
3,057,826	-		DDA3937_RS13390	0.52	-2.1
3,057,826	-		DDA3937_RS13390	0.52	-2.0
3,057,826	-		DDA3937_RS13390	0.52	-1.1
3,057,865	-		DDA3937_RS13390	0.55	-1.2
3,057,977	+		DDA3937_RS13390	0.64	-1.9
3,057,978	-		DDA3937_RS13390	0.64	-1.8
3,058,257	-		DDA3937_RS13390	0.85	-0.5
3,058,343	-				-0.9
3,058,343	-				-0.4
3,058,412	+				+1.0
3,058,413	-				-0.2
3,058,447	-				-0.9
3,058,457	-				-1.9
3,058,496	+				-0.2
3,058,497	-				-1.0
3,058,540	+				-0.1
3,058,541	-				-0.4
3,058,544	+				-1.2
3,058,544	+				-1.4
3,058,544	+				-1.4
3,058,547	+				-1.0
3,058,563	+				-1.3
3,058,563	+				-1.8
3,058,567	+				-0.9
3,058,574	-				-0.4
3,058,577	+				+0.6
3,058,588	-				+0.6
3,058,588	-				-0.8
3,058,588	-				-0.3
3,058,598	-				+0.0
3,058,606	+				-1.2
3,058,607	-				-1.3
3,058,607	-				-0.5
3,058,607	-				-0.7
3,058,607	-				-3.1
3,058,631	-				-0.5
3,058,631	-				-1.1
3,058,631	-				+0.6
3,058,650	+		DDA3937_RS13395	0.12	-0.2
3,058,651	-		DDA3937_RS13395	0.12	-2.3
3,058,718	-		DDA3937_RS13395	0.26	-0.5
3,058,767	+		DDA3937_RS13395	0.36	-2.8
3,058,767	+		DDA3937_RS13395	0.36	+0.6
3,058,771	+		DDA3937_RS13395	0.37	-1.1
3,058,771	+		DDA3937_RS13395	0.37	-1.6
3,058,772	-		DDA3937_RS13395	0.37	-0.8
3,058,783	+		DDA3937_RS13395	0.39	+0.2
3,058,783	+		DDA3937_RS13395	0.39	-1.1
3,058,784	-		DDA3937_RS13395	0.39	-2.1
3,058,835	+				+1.8
3,058,835	+		DDA3937_RS13395	0.50	-0.3
3,058,835	+		DDA3937_RS13395	0.50	-0.6
3,058,835	+		DDA3937_RS13395	0.50	+0.2
3,058,835	+		DDA3937_RS13395	0.50	-0.1
3,058,835	+		DDA3937_RS13395	0.50	-1.0
3,058,836	-		DDA3937_RS13395	0.50	-2.1
3,058,836	-		DDA3937_RS13395	0.50	-1.1
3,058,892	+		DDA3937_RS13395	0.61	-0.3
3,058,892	+		DDA3937_RS13395	0.61	-0.8
3,058,893	-				+1.2
3,058,893	-		DDA3937_RS13395	0.62	-1.9
3,058,893	-		DDA3937_RS13395	0.62	-2.1
3,058,893	-		DDA3937_RS13395	0.62	-1.0
3,058,893	-		DDA3937_RS13395	0.62	-0.2
3,058,921	+		DDA3937_RS13395	0.67	-1.7
3,058,921	+		DDA3937_RS13395	0.67	+0.5
3,058,921	+		DDA3937_RS13395	0.67	-2.3
3,059,001	+		DDA3937_RS13395	0.84	-1.1
3,059,001	+		DDA3937_RS13395	0.84	-1.6
3,059,001	+		DDA3937_RS13395	0.84	-0.3
3,059,002	-		DDA3937_RS13395	0.84	-2.9
3,059,002	-		DDA3937_RS13395	0.84	-1.6
3,059,002	-		DDA3937_RS13395	0.84	-0.5
3,059,002	-		DDA3937_RS13395	0.84	-1.6
3,059,004	+		DDA3937_RS13395	0.84	-1.0
3,059,004	+		DDA3937_RS13395	0.84	-0.5
3,059,004	+		DDA3937_RS13395	0.84	-0.5
3,059,033	-				-1.6
3,059,033	-				-0.1
3,059,033	-				-1.2
3,059,033	-				+0.2
3,059,040	+				-1.0
3,059,041	-				-0.1
3,059,041	-				-1.1
3,059,130	-				-1.8
3,059,142	+				-3.3
3,059,149	-				-1.0
3,059,151	+				-1.4
3,059,151	+				-1.4
3,059,151	+				-1.2
3,059,152	-				-0.8
3,059,152	-				-0.9
3,059,152	-				-2.3
3,059,203	+		DDA3937_RS13400	0.12	-0.9
3,059,203	+		DDA3937_RS13400	0.12	-0.7
3,059,203	+		DDA3937_RS13400	0.12	-1.2
3,059,214	+		DDA3937_RS13400	0.13	-1.0
3,059,325	+		DDA3937_RS13400	0.24	-0.9
3,059,357	-		DDA3937_RS13400	0.27	-1.6
3,059,405	+		DDA3937_RS13400	0.31	-0.9
3,059,529	+		DDA3937_RS13400	0.44	-0.6
3,059,530	-		DDA3937_RS13400	0.44	+0.3
3,059,530	-		DDA3937_RS13400	0.44	-2.1
3,059,565	+		DDA3937_RS13400	0.47	-0.1
3,059,566	-		DDA3937_RS13400	0.47	+1.8
3,059,566	-		DDA3937_RS13400	0.47	-0.1
3,059,584	+		DDA3937_RS13400	0.49	+0.1
3,059,584	+		DDA3937_RS13400	0.49	+1.4
3,059,585	-		DDA3937_RS13400	0.49	-1.3
3,059,585	-		DDA3937_RS13400	0.49	-1.4
3,059,608	+		DDA3937_RS13400	0.51	-0.5
3,059,615	+		DDA3937_RS13400	0.52	-0.7
3,059,616	-		DDA3937_RS13400	0.52	+0.5
3,059,616	-		DDA3937_RS13400	0.52	+0.8
3,059,616	-		DDA3937_RS13400	0.52	-1.7
3,059,616	-		DDA3937_RS13400	0.52	-1.7
3,059,616	-		DDA3937_RS13400	0.52	+0.1
3,059,616	-		DDA3937_RS13400	0.52	-0.1
3,059,626	+		DDA3937_RS13400	0.53	-1.0
3,059,626	+		DDA3937_RS13400	0.53	-0.8
3,059,626	+		DDA3937_RS13400	0.53	+0.2
3,059,627	-		DDA3937_RS13400	0.53	+0.3
3,059,648	+		DDA3937_RS13400	0.55	+0.4
3,059,667	+		DDA3937_RS13400	0.57	-0.8
3,059,667	+		DDA3937_RS13400	0.57	+1.2
3,059,667	+		DDA3937_RS13400	0.57	-0.4
3,059,667	+		DDA3937_RS13400	0.57	-0.3
3,059,667	+		DDA3937_RS13400	0.57	+0.3
3,059,668	-		DDA3937_RS13400	0.57	-2.3
3,059,668	-		DDA3937_RS13400	0.57	-0.2
3,059,668	-		DDA3937_RS13400	0.57	-1.8
3,059,668	-		DDA3937_RS13400	0.57	-2.6
3,059,668	-		DDA3937_RS13400	0.57	-1.2
3,059,739	+		DDA3937_RS13400	0.64	-2.4
3,059,740	-		DDA3937_RS13400	0.64	+0.7
3,059,745	+		DDA3937_RS13400	0.65	-1.5
3,059,746	-		DDA3937_RS13400	0.65	-1.0
3,059,746	-		DDA3937_RS13400	0.65	+1.9
3,059,852	+		DDA3937_RS13400	0.75	-0.8
3,059,852	+		DDA3937_RS13400	0.75	-1.1
3,059,853	-		DDA3937_RS13400	0.75	-0.5
3,059,892	+		DDA3937_RS13400	0.79	-0.8
3,059,893	-		DDA3937_RS13400	0.79	+0.3
3,059,893	-		DDA3937_RS13400	0.79	-1.3
3,059,893	-		DDA3937_RS13400	0.79	+0.5
3,059,893	-		DDA3937_RS13400	0.79	-0.8
3,059,894	+		DDA3937_RS13400	0.79	-0.5
3,059,894	+		DDA3937_RS13400	0.79	-0.2
3,059,894	+		DDA3937_RS13400	0.79	-1.0
3,059,894	+		DDA3937_RS13400	0.79	-1.3
3,059,895	-		DDA3937_RS13400	0.80	-1.2
3,059,895	-		DDA3937_RS13400	0.80	+0.2
3,059,937	+		DDA3937_RS13400	0.84	-0.3
3,059,938	-		DDA3937_RS13400	0.84	-1.0
3,059,938	-		DDA3937_RS13400	0.84	-1.0
3,059,938	-		DDA3937_RS13400	0.84	-3.4
3,059,953	-		DDA3937_RS13400	0.85	+0.9
3,059,994	-		DDA3937_RS13400	0.89	-0.8
3,060,007	+				-0.8
3,060,007	+				-0.6
3,060,008	-				-1.5
3,060,012	+				+0.8
3,060,012	+				-1.0
3,060,013	-				-1.3
3,060,017	+				+0.5
3,060,017	+				-2.2
3,060,017	+				-1.9
3,060,017	+				-0.9
3,060,018	-				+0.2
3,060,018	-				-0.1
3,060,018	-				-1.1
3,060,018	-				-3.4
3,060,018	-				-1.0
3,060,018	-				-1.8
3,060,018	-				-2.3
3,060,028	+				-2.8
3,060,028	+				+0.5
3,060,029	-				-1.7
3,060,029	-				+3.4