Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS13255

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,024,662	+		DDA3937_RS13250	0.52	-0.3
3,024,662	+		DDA3937_RS13250	0.52	-2.6
3,024,663	-		DDA3937_RS13250	0.52	+0.1
3,024,694	+		DDA3937_RS13250	0.54	-0.8
3,024,694	+		DDA3937_RS13250	0.54	-2.1
3,024,695	-		DDA3937_RS13250	0.54	+0.1
3,024,695	-		DDA3937_RS13250	0.54	+1.8
3,024,697	+		DDA3937_RS13250	0.54	-0.0
3,024,697	+		DDA3937_RS13250	0.54	-2.1
3,024,698	-		DDA3937_RS13250	0.54	+0.0
3,024,698	-		DDA3937_RS13250	0.54	-0.7
3,024,734	+		DDA3937_RS13250	0.56	+0.2
3,024,836	+		DDA3937_RS13250	0.62	-0.4
3,024,836	+		DDA3937_RS13250	0.62	-1.5
3,024,970	+		DDA3937_RS13250	0.70	-0.6
3,024,971	-		DDA3937_RS13250	0.70	-1.7
3,025,035	+		DDA3937_RS13250	0.74	+0.2
3,025,036	-		DDA3937_RS13250	0.74	-0.5
3,025,036	-		DDA3937_RS13250	0.74	-1.5
3,025,049	+		DDA3937_RS13250	0.74	-0.3
3,025,050	-		DDA3937_RS13250	0.74	-0.8
3,025,050	-		DDA3937_RS13250	0.74	-1.9
3,025,221	+		DDA3937_RS13250	0.84	-0.3
3,025,221	+		DDA3937_RS13250	0.84	-0.5
3,025,221	+		DDA3937_RS13250	0.84	-2.1
3,025,221	+		DDA3937_RS13250	0.84	-0.8
3,025,222	-		DDA3937_RS13250	0.84	+0.3
3,025,222	-		DDA3937_RS13250	0.84	-2.1
3,025,336	+				+0.1
3,025,337	-				-1.8
3,025,340	+				+2.4
3,025,340	+				+0.6
3,025,340	+				-1.1
3,025,340	+				+0.5
3,025,340	+				+0.3
3,025,340	+				+0.9
3,025,340	+				+1.4
3,025,340	+				-1.7
3,025,340	+				-1.4
3,025,340	+				-1.0
3,025,340	+				-0.6
3,025,340	+				-2.0
3,025,340	+				-0.4
3,025,340	+				-0.3
3,025,340	+				-0.9
3,025,340	+				+3.5
3,025,340	+				-2.1
3,025,340	+				+0.0
3,025,340	+				-0.7
3,025,340	+				-2.0
3,025,340	+				-0.2
3,025,340	+				-2.4
3,025,340	+				+0.2
3,025,340	+				-1.1
3,025,340	+				-0.7
3,025,340	+				-0.2
3,025,340	+				-0.0
3,025,340	+				-0.8
3,025,340	+				+0.1
3,025,340	+				+0.4
3,025,341	-				-1.4
3,025,341	-				-2.3
3,025,341	-				-1.4
3,025,341	-				-0.4
3,025,341	-				-0.1
3,025,341	-				+0.5
3,025,341	-				+0.2
3,025,341	-				-0.9
3,025,341	-				+0.7
3,025,341	-				+0.2
3,025,341	-				-1.8
3,025,341	-				-1.0
3,025,341	-				-0.2
3,025,341	-				-0.5
3,025,341	-				+0.5
3,025,341	-				-0.5
3,025,341	-				-0.6
3,025,341	-				-1.7
3,025,341	-				+1.2
3,025,341	-				-1.2
3,025,341	-				+0.1
3,025,341	-				+0.1
3,025,341	-				-0.9
3,025,341	-				-0.8
3,025,341	-				-1.6
3,025,341	-				-1.3
3,025,341	-				+0.3
3,025,341	-				-1.4
3,025,341	-				-0.4
3,025,341	-				-0.2
3,025,341	-				-2.1
3,025,341	-				-0.5
3,025,341	-				+0.1
3,025,341	-				+0.2
3,025,347	+				-0.7
3,025,369	-				-0.4
3,025,369	-				-0.8
3,025,378	-				-2.2
3,025,416	+				-0.7
3,025,416	+				-0.3
3,025,417	-				-0.0
3,025,417	-				-0.3
3,026,102	+				-1.1
3,026,102	+				-0.7
3,026,103	-				+0.8
3,026,110	-				+0.7
3,026,120	+				-0.7
3,026,230	+				-1.1
3,026,266	+				+0.3
3,026,266	+				-1.4
3,026,266	+				-1.1
3,026,266	+				+0.2
3,026,266	+				+0.5
3,026,267	-				-0.1
3,026,267	-				-0.4
3,026,267	-				-0.7
3,026,267	-				+0.2
3,026,267	-				-2.7
3,026,267	-				-1.3
3,026,267	-				+0.7
3,026,267	-				+0.0
3,026,267	-				-1.4
3,026,267	-				+0.1
3,026,267	-				-1.2
3,026,267	-				+0.7
3,026,297	+				-0.1
3,026,297	+				+0.0
3,026,297	+				-1.4
3,026,297	+				+1.2
3,026,297	+				-0.1
3,026,298	-				-1.4
3,026,298	-				-0.3
3,026,298	-				-0.1
3,026,298	-				-1.1
3,026,298	-				-1.1
3,026,298	-				+0.2
3,026,298	-				+0.0
3,026,335	+				+1.2
3,026,336	-				-0.6
3,026,336	-				+0.2
3,026,366	+				+1.2
3,026,367	-				+0.9
3,026,367	-				-2.9
3,026,367	-				-0.6
3,026,367	-				-0.4
3,026,367	-				+3.3
3,026,367	-				+0.3
3,026,436	-				-1.4
3,026,555	-		DDA3937_RS13260	0.15	-0.4
3,026,726	+		DDA3937_RS13260	0.25	-0.0
3,026,726	+		DDA3937_RS13260	0.25	+0.8
3,026,726	+		DDA3937_RS13260	0.25	-0.5
3,026,726	+		DDA3937_RS13260	0.25	-1.1
3,026,726	+		DDA3937_RS13260	0.25	-0.7
3,026,726	+		DDA3937_RS13260	0.25	+1.2
3,026,726	+		DDA3937_RS13260	0.25	-1.1
3,026,727	-		DDA3937_RS13260	0.26	-1.0
3,026,727	-		DDA3937_RS13260	0.26	-0.7
3,026,727	-		DDA3937_RS13260	0.26	+1.2
3,026,727	-		DDA3937_RS13260	0.26	-1.2
3,026,727	-		DDA3937_RS13260	0.26	+0.8
3,026,728	+		DDA3937_RS13260	0.26	-1.4
3,026,728	+		DDA3937_RS13260	0.26	-1.3
3,026,728	+		DDA3937_RS13260	0.26	+1.0
3,026,728	+		DDA3937_RS13260	0.26	+0.0
3,026,728	+		DDA3937_RS13260	0.26	+0.5
3,026,728	+		DDA3937_RS13260	0.26	+1.9
3,026,728	+		DDA3937_RS13260	0.26	-1.4
3,026,728	+		DDA3937_RS13260	0.26	-0.5
3,026,728	+		DDA3937_RS13260	0.26	-0.9
3,026,729	-		DDA3937_RS13260	0.26	+0.2
3,026,729	-		DDA3937_RS13260	0.26	-1.7
3,026,729	-		DDA3937_RS13260	0.26	+0.9
3,026,729	-		DDA3937_RS13260	0.26	+2.3
3,026,729	-		DDA3937_RS13260	0.26	-0.6
3,026,729	-		DDA3937_RS13260	0.26	-0.5
3,026,729	-		DDA3937_RS13260	0.26	+0.2
3,026,858	-		DDA3937_RS13260	0.33	-1.0
3,026,858	-		DDA3937_RS13260	0.33	-0.2
3,026,858	-		DDA3937_RS13260	0.33	-1.4
3,026,976	+		DDA3937_RS13260	0.40	-0.6
3,026,977	-		DDA3937_RS13260	0.41	+0.3
3,026,977	-		DDA3937_RS13260	0.41	-0.7
3,026,977	-		DDA3937_RS13260	0.41	-1.3
3,027,045	-		DDA3937_RS13260	0.45	-0.0
3,027,061	+		DDA3937_RS13260	0.46	-1.1
3,027,061	+		DDA3937_RS13260	0.46	-1.1
3,027,062	-		DDA3937_RS13260	0.46	+0.5