Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS11515

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,613,753	+		DDA3937_RS11510	0.35	+0.6
2,613,754	-		DDA3937_RS11510	0.35	+1.7
2,613,862	-		DDA3937_RS11510	0.45	-1.8
2,613,895	+		DDA3937_RS11510	0.48	+0.4
2,613,895	+		DDA3937_RS11510	0.48	+1.3
2,613,895	+		DDA3937_RS11510	0.48	+0.1
2,613,895	+		DDA3937_RS11510	0.48	-0.8
2,613,895	+		DDA3937_RS11510	0.48	-0.5
2,613,896	-		DDA3937_RS11510	0.48	-0.2
2,613,896	-		DDA3937_RS11510	0.48	-1.0
2,613,896	-		DDA3937_RS11510	0.48	-0.2
2,613,897	+		DDA3937_RS11510	0.48	-0.3
2,613,949	+		DDA3937_RS11510	0.53	-2.1
2,613,949	+		DDA3937_RS11510	0.53	+0.1
2,613,950	-		DDA3937_RS11510	0.53	-1.5
2,614,006	+		DDA3937_RS11510	0.58	-1.1
2,614,007	-		DDA3937_RS11510	0.58	-0.3
2,614,007	-		DDA3937_RS11510	0.58	-0.7
2,614,007	-		DDA3937_RS11510	0.58	+0.1
2,614,039	+		DDA3937_RS11510	0.61	-0.5
2,614,102	-		DDA3937_RS11510	0.66	+0.4
2,614,102	-		DDA3937_RS11510	0.66	-1.8
2,614,106	+		DDA3937_RS11510	0.67	+1.2
2,614,106	+		DDA3937_RS11510	0.67	+0.3
2,614,107	-		DDA3937_RS11510	0.67	-1.2
2,614,107	-		DDA3937_RS11510	0.67	-1.6
2,614,107	-		DDA3937_RS11510	0.67	-0.4
2,614,237	+		DDA3937_RS11510	0.78	+1.0
2,614,373	-				-2.3
2,614,379	+				-0.7
2,614,379	+				-0.9
2,614,465	+				+0.1
2,614,465	+				-0.4
2,614,496	+				+0.1
2,614,817	+		DDA3937_RS11515	0.18	-0.2
2,614,859	+		DDA3937_RS11515	0.22	-0.0
2,614,859	+		DDA3937_RS11515	0.22	+0.8
2,614,868	-				+3.8
2,614,889	+		DDA3937_RS11515	0.24	+0.9
2,614,890	-		DDA3937_RS11515	0.24	-1.2
2,614,890	-		DDA3937_RS11515	0.24	+1.0
2,614,894	+		DDA3937_RS11515	0.24	+0.2
2,614,895	-		DDA3937_RS11515	0.25	-0.6
2,614,895	-		DDA3937_RS11515	0.25	-0.9
2,614,895	-		DDA3937_RS11515	0.25	+0.7
2,614,897	+		DDA3937_RS11515	0.25	+0.7
2,614,897	+		DDA3937_RS11515	0.25	+4.5
2,614,897	+		DDA3937_RS11515	0.25	+1.6
2,614,897	+		DDA3937_RS11515	0.25	+0.5
2,614,898	-		DDA3937_RS11515	0.25	+1.4
2,614,898	-		DDA3937_RS11515	0.25	+1.8
2,614,907	+		DDA3937_RS11515	0.25	+1.8
2,614,908	-		DDA3937_RS11515	0.26	+0.4
2,614,908	-		DDA3937_RS11515	0.26	-2.0
2,614,922	+		DDA3937_RS11515	0.27	+0.2
2,614,923	-		DDA3937_RS11515	0.27	+0.2
2,614,924	+		DDA3937_RS11515	0.27	+2.6
2,614,925	-		DDA3937_RS11515	0.27	+1.1
2,614,925	-		DDA3937_RS11515	0.27	-1.0
2,614,925	-		DDA3937_RS11515	0.27	-0.0
2,614,925	-		DDA3937_RS11515	0.27	+0.1
2,614,925	-		DDA3937_RS11515	0.27	+1.1
2,614,925	-		DDA3937_RS11515	0.27	+0.7
2,614,925	-		DDA3937_RS11515	0.27	+1.3
2,614,925	-		DDA3937_RS11515	0.27	+1.6
2,614,925	-		DDA3937_RS11515	0.27	-0.0
2,614,946	+		DDA3937_RS11515	0.29	+2.2
2,614,946	+		DDA3937_RS11515	0.29	+2.2
2,614,947	-		DDA3937_RS11515	0.29	+0.5
2,614,950	+		DDA3937_RS11515	0.29	+0.7
2,615,023	+		DDA3937_RS11515	0.35	+1.1
2,615,023	+		DDA3937_RS11515	0.35	-0.0
2,615,024	-		DDA3937_RS11515	0.35	+2.1
2,615,071	+				-0.0
2,615,071	+		DDA3937_RS11515	0.38	+0.2
2,615,071	+		DDA3937_RS11515	0.38	+1.0
2,615,071	+		DDA3937_RS11515	0.38	+0.8
2,615,071	+		DDA3937_RS11515	0.38	+1.0
2,615,071	+		DDA3937_RS11515	0.38	+2.0
2,615,071	+		DDA3937_RS11515	0.38	-0.3
2,615,072	-		DDA3937_RS11515	0.38	+1.0
2,615,072	-		DDA3937_RS11515	0.38	+0.5
2,615,072	-		DDA3937_RS11515	0.38	-1.1
2,615,072	-		DDA3937_RS11515	0.38	+0.6
2,615,239	+		DDA3937_RS11515	0.52	+2.7
2,615,275	+		DDA3937_RS11515	0.54	+0.4
2,615,360	+		DDA3937_RS11515	0.61	+1.0
2,615,429	+		DDA3937_RS11515	0.67	+1.6
2,615,429	+		DDA3937_RS11515	0.67	+2.3
2,615,429	+		DDA3937_RS11515	0.67	+1.2
2,615,430	-		DDA3937_RS11515	0.67	+0.7
2,615,430	-		DDA3937_RS11515	0.67	-0.2
2,615,561	-		DDA3937_RS11515	0.77	-0.3
2,615,613	-		DDA3937_RS11515	0.81	+1.5
2,615,613	-		DDA3937_RS11515	0.81	+1.3
2,615,618	+		DDA3937_RS11515	0.81	+0.1
2,615,619	-		DDA3937_RS11515	0.82	+2.3
2,615,758	-				+1.1
2,615,758	-				+1.8
2,615,822	-				+1.5
2,615,822	-				+0.8
2,615,873	+				-2.6
2,615,873	+				+0.7
2,615,874	-				-0.5
2,615,885	+				+0.1
2,615,886	-				-3.1
2,615,889	+				+1.1
2,615,890	-				-0.8
2,615,890	-				-1.4
2,615,890	-				-2.1
2,615,890	-				-1.4
2,615,890	-				-2.2
2,615,890	-				-2.4
2,615,890	-				-2.0
2,616,024	+				-1.3
2,616,025	-				-1.7
2,616,025	-				-1.0
2,616,116	+				-1.2
2,616,116	+				+0.2
2,616,126	-				-0.9
2,616,164	+				-0.7
2,616,176	+				-1.5
2,616,176	+				+0.4
2,616,176	+				-1.6
2,616,179	+				-2.0
2,616,179	+				-0.0
2,616,179	+				+0.8
2,616,180	-				-0.1
2,616,180	-				-1.3
2,616,196	-		DDA3937_RS11520	0.15	-0.6
2,616,213	+		DDA3937_RS11520	0.23	-2.4
2,616,321	+		DDA3937_RS11520	0.71	-0.6
2,616,322	-		DDA3937_RS11520	0.72	-1.3
2,616,322	-		DDA3937_RS11520	0.72	-0.4
2,616,322	-		DDA3937_RS11520	0.72	+0.3
2,616,322	-		DDA3937_RS11520	0.72	-1.0
2,616,377	-				-0.1
2,616,447	-				+0.3
2,616,565	+				-1.2
2,616,573	+				+0.6
2,616,584	+				-0.5
2,616,584	+				-1.7
2,616,584	+				+0.7
2,616,585	-				+0.0
2,616,585	-				+3.1
2,616,679	+		DDA3937_RS11525	0.11	-0.2
2,616,679	+		DDA3937_RS11525	0.11	+0.7
2,616,679	+		DDA3937_RS11525	0.11	+0.3
2,616,679	+		DDA3937_RS11525	0.11	+0.2
2,616,680	-		DDA3937_RS11525	0.11	-0.6
2,616,680	-		DDA3937_RS11525	0.11	-0.9
2,616,700	+		DDA3937_RS11525	0.12	+0.6
2,616,701	-		DDA3937_RS11525	0.12	+0.2
2,616,701	-		DDA3937_RS11525	0.12	-0.5