Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS10710

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,409,400	+		DDA3937_RS10705	0.21	+0.8
2,409,404	-		DDA3937_RS10705	0.21	-0.2
2,409,440	+		DDA3937_RS10705	0.24	+0.9
2,409,441	-		DDA3937_RS10705	0.24	-2.5
2,409,441	-		DDA3937_RS10705	0.24	-0.4
2,409,471	+		DDA3937_RS10705	0.27	+0.6
2,409,553	+		DDA3937_RS10705	0.34	-0.3
2,409,553	+		DDA3937_RS10705	0.34	+0.3
2,409,553	+		DDA3937_RS10705	0.34	+1.2
2,409,553	+		DDA3937_RS10705	0.34	-0.0
2,409,554	-		DDA3937_RS10705	0.34	-0.5
2,409,554	-		DDA3937_RS10705	0.34	-0.2
2,409,554	-		DDA3937_RS10705	0.34	+0.1
2,409,554	-		DDA3937_RS10705	0.34	-0.3
2,409,554	-		DDA3937_RS10705	0.34	-0.3
2,409,554	-		DDA3937_RS10705	0.34	-0.7
2,409,554	-		DDA3937_RS10705	0.34	-0.0
2,409,554	-		DDA3937_RS10705	0.34	-0.0
2,409,581	+		DDA3937_RS10705	0.36	-1.3
2,409,581	+		DDA3937_RS10705	0.36	+1.8
2,409,655	-		DDA3937_RS10705	0.42	-1.5
2,409,660	-		DDA3937_RS10705	0.42	+0.4
2,409,666	+		DDA3937_RS10705	0.43	-0.8
2,409,666	+		DDA3937_RS10705	0.43	-1.0
2,409,667	-		DDA3937_RS10705	0.43	-1.0
2,409,719	+		DDA3937_RS10705	0.47	+0.6
2,409,719	+		DDA3937_RS10705	0.47	-1.8
2,409,720	-		DDA3937_RS10705	0.47	+1.0
2,409,720	-		DDA3937_RS10705	0.47	+0.3
2,409,720	-		DDA3937_RS10705	0.47	+0.0
2,409,720	-		DDA3937_RS10705	0.47	+5.5
2,409,721	+		DDA3937_RS10705	0.47	-0.8
2,409,721	+		DDA3937_RS10705	0.47	-0.1
2,409,721	+		DDA3937_RS10705	0.47	-0.2
2,409,721	+				+0.6
2,409,722	-		DDA3937_RS10705	0.47	+0.7
2,409,722	-		DDA3937_RS10705	0.47	-2.5
2,409,722	-		DDA3937_RS10705	0.47	+0.6
2,409,722	-		DDA3937_RS10705	0.47	-0.8
2,409,722	-		DDA3937_RS10705	0.47	-0.5
2,409,730	+		DDA3937_RS10705	0.48	+0.3
2,409,731	-		DDA3937_RS10705	0.48	+1.2
2,409,740	+		DDA3937_RS10705	0.49	-0.2
2,409,784	-		DDA3937_RS10705	0.52	-1.3
2,409,830	-		DDA3937_RS10705	0.56	-0.3
2,409,833	-		DDA3937_RS10705	0.56	+0.3
2,409,833	-		DDA3937_RS10705	0.56	-1.3
2,409,839	+		DDA3937_RS10705	0.57	+0.1
2,409,840	-		DDA3937_RS10705	0.57	-0.4
2,409,851	-		DDA3937_RS10705	0.58	+0.6
2,409,859	+		DDA3937_RS10705	0.59	-1.8
2,409,860	-		DDA3937_RS10705	0.59	-1.8
2,409,938	+		DDA3937_RS10705	0.65	+0.2
2,409,938	+		DDA3937_RS10705	0.65	+0.6
2,409,965	+		DDA3937_RS10705	0.67	-0.3
2,409,965	+		DDA3937_RS10705	0.67	-1.0
2,409,966	-		DDA3937_RS10705	0.67	-1.3
2,409,968	-		DDA3937_RS10705	0.67	+0.7
2,410,122	+		DDA3937_RS10705	0.80	+2.3
2,410,123	-		DDA3937_RS10705	0.80	-1.0
2,410,123	-		DDA3937_RS10705	0.80	-0.1
2,410,174	+		DDA3937_RS10705	0.84	-0.3
2,410,174	+		DDA3937_RS10705	0.84	-0.2
2,410,291	+				+0.6
2,410,292	-				-2.0
2,410,325	+				-2.3
2,410,344	-				-0.3
2,410,344	-				+1.0
2,410,422	+				-1.2
2,410,423	-				+1.3
2,410,423	-				-0.0
2,410,428	-				-2.5
2,410,470	+		DDA3937_RS10710	0.10	-1.0
2,410,539	+		DDA3937_RS10710	0.18	+0.4
2,410,540	-		DDA3937_RS10710	0.19	+0.3
2,410,564	+		DDA3937_RS10710	0.21	-0.8
2,410,565	-		DDA3937_RS10710	0.22	-0.8
2,410,565	-		DDA3937_RS10710	0.22	+0.6
2,410,624	+		DDA3937_RS10710	0.29	-0.2
2,410,625	-		DDA3937_RS10710	0.29	-0.2
2,410,625	-		DDA3937_RS10710	0.29	-0.1
2,410,929	+		DDA3937_RS10710	0.65	+2.8
2,410,930	-		DDA3937_RS10710	0.65	-0.6
2,410,933	+		DDA3937_RS10710	0.66	-1.2
2,410,933	+		DDA3937_RS10710	0.66	-1.8
2,410,934	-		DDA3937_RS10710	0.66	+0.5
2,410,938	+		DDA3937_RS10710	0.66	+1.3
2,410,938	+		DDA3937_RS10710	0.66	-1.8
2,410,938	+		DDA3937_RS10710	0.66	-0.3
2,410,938	+		DDA3937_RS10710	0.66	+0.7
2,410,939	-		DDA3937_RS10710	0.66	+0.1
2,410,939	-		DDA3937_RS10710	0.66	-0.8
2,410,939	-		DDA3937_RS10710	0.66	-0.1
2,410,993	+		DDA3937_RS10710	0.73	-0.6
2,410,994	-		DDA3937_RS10710	0.73	-0.8
2,410,994	-		DDA3937_RS10710	0.73	-0.9
2,410,994	-		DDA3937_RS10710	0.73	+0.4
2,410,994	-		DDA3937_RS10710	0.73	+1.3
2,411,056	+		DDA3937_RS10710	0.80	-0.1
2,411,057	-		DDA3937_RS10710	0.81	+0.1
2,411,228	+				-0.6
2,411,229	-				-0.4
2,411,229	-				+0.1
2,411,230	+				-0.3
2,411,231	-				+0.6
2,411,348	+				+0.1
2,411,349	-				-0.1
2,411,349	-				-0.7
2,411,416	+				-1.3
2,411,424	+				-0.5
2,411,436	+				-2.8
2,411,441	+				-0.4
2,411,441	+				-0.4
2,411,442	-				-0.4
2,411,442	-				-1.4
2,411,449	-				+1.3
2,411,507	+				+0.2
2,411,541	-		DDA3937_RS10715	0.14	-0.6
2,411,541	-		DDA3937_RS10715	0.14	-0.8
2,411,550	-		DDA3937_RS10715	0.16	-0.1
2,411,563	-		DDA3937_RS10715	0.19	+0.4
2,411,563	-		DDA3937_RS10715	0.19	-2.7
2,411,563	-		DDA3937_RS10715	0.19	+0.6
2,411,563	-		DDA3937_RS10715	0.19	+1.0
2,411,563	-		DDA3937_RS10715	0.19	-0.9
2,411,572	+		DDA3937_RS10715	0.21	+1.3
2,411,572	+		DDA3937_RS10715	0.21	-2.6
2,411,573	-		DDA3937_RS10715	0.21	-0.8
2,411,573	-		DDA3937_RS10715	0.21	+0.2
2,411,621	+		DDA3937_RS10715	0.31	-0.8
2,411,622	-		DDA3937_RS10715	0.32	-1.2
2,411,639	+		DDA3937_RS10715	0.35	+0.1
2,411,640	-		DDA3937_RS10715	0.36	-1.0
2,411,640	-		DDA3937_RS10715	0.36	+2.1
2,411,640	-		DDA3937_RS10715	0.36	-0.2
2,411,646	+		DDA3937_RS10715	0.37	-0.9
2,411,646	+		DDA3937_RS10715	0.37	-1.4
2,411,717	+		DDA3937_RS10715	0.53	-0.2
2,411,771	+		DDA3937_RS10715	0.64	-0.6
2,411,774	+		DDA3937_RS10715	0.65	-0.5
2,411,775	-		DDA3937_RS10715	0.65	-0.8
2,411,775	-		DDA3937_RS10715	0.65	+1.4
2,411,775	-		DDA3937_RS10715	0.65	+0.3
2,411,795	+		DDA3937_RS10715	0.70	+0.3
2,411,795	+		DDA3937_RS10715	0.70	-0.8
2,411,796	-		DDA3937_RS10715	0.70	-1.2
2,411,796	-		DDA3937_RS10715	0.70	-2.0
2,411,861	-		DDA3937_RS10715	0.84	-1.8
2,411,924	+				-1.2
2,412,017	+				-1.7
2,412,018	-				+1.0
2,412,053	+				-0.3
2,412,054	-				+0.7
2,412,058	-				-0.6
2,412,085	+				-1.7
2,412,085	+				-0.1
2,412,111	-				+0.2
2,412,111	-				+1.0
2,412,183	-				-0.5