Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS09900

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,237,058	+		DDA3937_RS09895	0.40	+0.6
2,237,058	+		DDA3937_RS09895	0.40	-0.4
2,237,058	+		DDA3937_RS09895	0.40	+0.8
2,237,063	+		DDA3937_RS09895	0.40	-0.5
2,237,064	-		DDA3937_RS09895	0.40	-1.1
2,237,098	+		DDA3937_RS09895	0.43	-1.0
2,237,098	+		DDA3937_RS09895	0.43	-1.5
2,237,099	-		DDA3937_RS09895	0.43	-0.3
2,237,099	-		DDA3937_RS09895	0.43	-0.3
2,237,099	-		DDA3937_RS09895	0.43	+1.5
2,237,150	+		DDA3937_RS09895	0.46	+0.1
2,237,151	-		DDA3937_RS09895	0.46	-0.9
2,237,192	+		DDA3937_RS09895	0.49	-0.7
2,237,192	+		DDA3937_RS09895	0.49	+0.4
2,237,193	-		DDA3937_RS09895	0.49	-0.3
2,237,193	-		DDA3937_RS09895	0.49	-0.6
2,237,200	+		DDA3937_RS09895	0.50	-1.0
2,237,219	-		DDA3937_RS09895	0.51	+0.5
2,237,219	-		DDA3937_RS09895	0.51	-0.9
2,237,257	+		DDA3937_RS09895	0.54	-0.2
2,237,257	+		DDA3937_RS09895	0.54	-1.7
2,237,257	+		DDA3937_RS09895	0.54	+0.9
2,237,257	+		DDA3937_RS09895	0.54	+1.1
2,237,258	-		DDA3937_RS09895	0.54	-0.9
2,237,285	+		DDA3937_RS09895	0.56	-0.7
2,237,285	+		DDA3937_RS09895	0.56	+1.2
2,237,285	+		DDA3937_RS09895	0.56	-0.4
2,237,285	+		DDA3937_RS09895	0.56	-2.1
2,237,285	+		DDA3937_RS09895	0.56	+0.8
2,237,285	+		DDA3937_RS09895	0.56	-0.9
2,237,286	-		DDA3937_RS09895	0.56	-0.8
2,237,286	-		DDA3937_RS09895	0.56	+0.3
2,237,312	+		DDA3937_RS09895	0.57	-0.3
2,237,339	+		DDA3937_RS09895	0.59	-0.1
2,237,339	+		DDA3937_RS09895	0.59	+0.2
2,237,340	-		DDA3937_RS09895	0.59	+0.8
2,237,351	+		DDA3937_RS09895	0.60	+0.5
2,237,351	+		DDA3937_RS09895	0.60	+0.1
2,237,541	-		DDA3937_RS09895	0.73	-0.4
2,237,585	-		DDA3937_RS09895	0.76	-0.1
2,237,595	+		DDA3937_RS09895	0.77	+1.7
2,237,639	+		DDA3937_RS09895	0.80	+0.8
2,237,639	+		DDA3937_RS09895	0.80	+0.1
2,237,639	+		DDA3937_RS09895	0.80	+0.2
2,237,640	-		DDA3937_RS09895	0.80	-0.9
2,237,713	+		DDA3937_RS09895	0.85	-1.2
2,237,714	-		DDA3937_RS09895	0.85	-0.2
2,237,723	+		DDA3937_RS09895	0.86	+0.4
2,237,723	+		DDA3937_RS09895	0.86	+0.6
2,237,723	+		DDA3937_RS09895	0.86	-1.2
2,237,725	+		DDA3937_RS09895	0.86	-0.6
2,237,770	+		DDA3937_RS09895	0.89	-0.0
2,237,771	-		DDA3937_RS09895	0.89	-0.3
2,237,825	+				-0.2
2,237,825	+				+1.4
2,237,825	+				+0.5
2,237,826	-				-0.3
2,237,826	-				-0.4
2,237,826	-				+1.1
2,237,826	-				-0.3
2,237,826	-				+1.3
2,237,845	-				-0.7
2,237,879	+				-0.8
2,237,880	-				+2.7
2,237,880	-				-0.8
2,237,950	-				+0.1
2,237,951	+				+1.3
2,237,952	-				-0.6
2,237,952	-				+0.1
2,237,952	-				+0.3
2,237,952	-				+0.4
2,237,952	-				+0.2
2,237,961	-				-1.2
2,238,011	+				+0.1
2,238,012	-				+0.2
2,238,012	-				+1.4
2,238,043	+				+0.4
2,238,043	+				-0.2
2,238,044	-				+0.1
2,238,094	+				-0.6
2,238,327	+		DDA3937_RS09900	0.23	+0.2
2,238,328	-		DDA3937_RS09900	0.23	-1.5
2,238,328	-		DDA3937_RS09900	0.23	-0.6
2,238,413	+		DDA3937_RS09900	0.29	-0.4
2,238,413	+		DDA3937_RS09900	0.29	-0.5
2,238,413	+		DDA3937_RS09900	0.29	-0.9
2,238,414	-		DDA3937_RS09900	0.30	-1.5
2,238,414	-		DDA3937_RS09900	0.30	+0.1
2,238,417	+		DDA3937_RS09900	0.30	-0.3
2,238,417	+		DDA3937_RS09900	0.30	-1.3
2,238,417	+		DDA3937_RS09900	0.30	-0.2
2,238,417	+		DDA3937_RS09900	0.30	+0.4
2,238,417	+		DDA3937_RS09900	0.30	-1.0
2,238,417	+		DDA3937_RS09900	0.30	+0.2
2,238,418	-		DDA3937_RS09900	0.30	+0.2
2,238,418	-		DDA3937_RS09900	0.30	-1.4
2,238,418	-		DDA3937_RS09900	0.30	+0.2
2,238,418	-		DDA3937_RS09900	0.30	+1.5
2,238,418	-		DDA3937_RS09900	0.30	+0.7
2,238,425	+		DDA3937_RS09900	0.30	+1.5
2,238,425	+		DDA3937_RS09900	0.30	-0.3
2,238,425	+		DDA3937_RS09900	0.30	-1.0
2,238,426	-		DDA3937_RS09900	0.30	-0.4
2,238,426	-		DDA3937_RS09900	0.30	+0.1
2,238,426	-		DDA3937_RS09900	0.30	-1.6
2,238,462	+		DDA3937_RS09900	0.33	-0.1
2,238,462	+		DDA3937_RS09900	0.33	-1.1
2,238,463	-		DDA3937_RS09900	0.33	-0.1
2,238,463	-		DDA3937_RS09900	0.33	-0.2
2,238,463	-		DDA3937_RS09900	0.33	-2.2
2,238,463	-		DDA3937_RS09900	0.33	-1.5
2,238,495	+		DDA3937_RS09900	0.36	+0.1
2,238,496	-		DDA3937_RS09900	0.36	-0.5
2,238,502	+		DDA3937_RS09900	0.36	+0.4
2,238,502	+		DDA3937_RS09900	0.36	-1.0
2,238,503	-		DDA3937_RS09900	0.36	+0.9
2,238,503	-				-1.2
2,238,503	-		DDA3937_RS09900	0.36	-0.0
2,238,503	-		DDA3937_RS09900	0.36	-0.2
2,238,537	-		DDA3937_RS09900	0.39	-0.6
2,238,537	-		DDA3937_RS09900	0.39	-0.8
2,238,543	+		DDA3937_RS09900	0.39	+0.1
2,238,543	+		DDA3937_RS09900	0.39	+0.5
2,238,543	+		DDA3937_RS09900	0.39	+1.1
2,238,543	+		DDA3937_RS09900	0.39	-0.9
2,238,544	-		DDA3937_RS09900	0.39	-0.5
2,238,547	-		DDA3937_RS09900	0.40	+0.2
2,238,563	+		DDA3937_RS09900	0.41	+0.1
2,238,563	+		DDA3937_RS09900	0.41	+0.6
2,238,564	-		DDA3937_RS09900	0.41	+1.2
2,238,635	-		DDA3937_RS09900	0.46	-1.5
2,238,635	-		DDA3937_RS09900	0.46	-0.7
2,238,635	-		DDA3937_RS09900	0.46	-0.7
2,238,635	-		DDA3937_RS09900	0.46	-0.5
2,238,642	+		DDA3937_RS09900	0.47	-0.1
2,238,643	-		DDA3937_RS09900	0.47	-0.2
2,238,741	-		DDA3937_RS09900	0.54	+1.3
2,238,803	+		DDA3937_RS09900	0.59	+0.0
2,238,810	-		DDA3937_RS09900	0.60	+0.5
2,238,810	-		DDA3937_RS09900	0.60	+1.5
2,238,908	+		DDA3937_RS09900	0.67	-1.2
2,238,948	+		DDA3937_RS09900	0.70	-0.3
2,238,948	+		DDA3937_RS09900	0.70	-0.8
2,238,948	+		DDA3937_RS09900	0.70	-1.2
2,238,948	+		DDA3937_RS09900	0.70	-0.1
2,238,948	+		DDA3937_RS09900	0.70	+0.1
2,238,948	+		DDA3937_RS09900	0.70	-1.5
2,238,949	-		DDA3937_RS09900	0.70	+0.1
2,238,949	-		DDA3937_RS09900	0.70	-2.4
2,238,949	-		DDA3937_RS09900	0.70	-0.6
2,238,949	-		DDA3937_RS09900	0.70	+0.7
2,238,960	+		DDA3937_RS09900	0.71	-1.5
2,239,058	+		DDA3937_RS09900	0.79	-1.7
2,239,089	-		DDA3937_RS09900	0.81	-0.3
2,239,113	+		DDA3937_RS09900	0.83	+1.5
2,239,113	+		DDA3937_RS09900	0.83	+0.3
2,239,113	+		DDA3937_RS09900	0.83	-0.2
2,239,114	-		DDA3937_RS09900	0.83	-2.5
2,239,114	-		DDA3937_RS09900	0.83	-1.7
2,239,114	-		DDA3937_RS09900	0.83	-1.9
2,239,121	+		DDA3937_RS09900	0.83	+0.0
2,239,122	-		DDA3937_RS09900	0.84	-0.2
2,239,163	+		DDA3937_RS09900	0.87	+0.9
2,239,163	+		DDA3937_RS09900	0.87	-0.9
2,239,257	+				+0.2
2,239,257	+				+1.1
2,239,258	-				+0.1
2,239,258	-				-0.3
2,239,258	-				-0.9
2,239,258	-				-0.5
2,239,259	+				-0.1
2,239,259	+				-0.5
2,239,259	+				+0.3
2,239,301	+				+1.2
2,239,302	-				-1.0
2,239,336	-				-0.6
2,239,385	-				-0.5
2,239,431	-				+1.1
2,239,436	+				+0.1
2,239,459	+				+2.5
2,239,477	+				+0.1
2,239,477	+				-0.2
2,239,478	-				+1.1
2,239,478	-				-1.7
2,239,509	+				+0.8
2,239,544	+		DDA3937_RS09905	0.10	-1.3
2,239,544	+		DDA3937_RS09905	0.10	-0.2
2,239,544	+		DDA3937_RS09905	0.10	+0.8
2,239,552	+		DDA3937_RS09905	0.11	+0.1
2,239,581	+		DDA3937_RS09905	0.14	-1.5
2,239,582	-		DDA3937_RS09905	0.14	-0.6
2,239,608	+		DDA3937_RS09905	0.17	+1.5
2,239,609	-		DDA3937_RS09905	0.17	+1.1
2,239,612	+		DDA3937_RS09905	0.17	-0.2
2,239,612	+		DDA3937_RS09905	0.17	-1.7
2,239,612	+		DDA3937_RS09905	0.17	+0.1
2,239,612	+		DDA3937_RS09905	0.17	+0.5
2,239,613	-		DDA3937_RS09905	0.17	-1.7
2,239,613	-				-1.2
2,239,626	+		DDA3937_RS09905	0.18	+1.4
2,239,626	+		DDA3937_RS09905	0.18	-0.0
2,239,626	+		DDA3937_RS09905	0.18	-0.9
2,239,627	-		DDA3937_RS09905	0.18	-2.4
2,239,627	-		DDA3937_RS09905	0.18	-1.1
2,239,629	+		DDA3937_RS09905	0.19	-1.0
2,239,630	-		DDA3937_RS09905	0.19	-0.4
2,239,655	-		DDA3937_RS09905	0.21	-1.0
2,239,817	-		DDA3937_RS09905	0.37	-1.0
2,239,817	-		DDA3937_RS09905	0.37	+0.5
2,239,876	+		DDA3937_RS09905	0.43	-0.2
2,239,876	+		DDA3937_RS09905	0.43	+0.2
2,239,876	+		DDA3937_RS09905	0.43	+0.8
2,239,877	-				+0.8
2,239,926	+		DDA3937_RS09905	0.47	-2.4
2,239,961	-		DDA3937_RS09905	0.51	-1.9
2,240,080	-		DDA3937_RS09905	0.62	-0.5
2,240,269	-		DDA3937_RS09905	0.81	+0.5
2,240,269	-		DDA3937_RS09905	0.81	+1.2
2,240,278	-		DDA3937_RS09905	0.82	+0.5