Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS08770

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,979,884	+		DDA3937_RS08765	0.61	-0.7
1,979,900	+		DDA3937_RS08765	0.61	-1.1
1,980,119	-		DDA3937_RS08765	0.72	+0.2
1,980,119	-		DDA3937_RS08765	0.72	+0.0
1,980,148	-		DDA3937_RS08765	0.73	-0.2
1,980,584	-				+0.1
1,980,614	+				-1.2
1,980,614	+				-0.9
1,980,614	+				-1.1
1,980,615	-				-0.3
1,980,710	+				+0.1
1,980,721	+				-1.0
1,980,765	+				+0.6
1,980,766	-				+0.1
1,980,766	-				+0.7
1,980,766	-				-1.2
1,980,837	+				-0.9
1,980,837	+				-1.7
1,980,837	+				-0.3
1,980,837	+				-0.7
1,980,838	-				-0.8
1,980,838	-				+0.4
1,980,838	-				-1.1
1,980,838	-				-0.9
1,980,974	+				+0.1
1,980,975	-				-0.9
1,980,980	+				+0.2
1,981,037	-				-0.9
1,981,044	-		DDA3937_RS08770	0.14	+0.0
1,981,167	+		DDA3937_RS08770	0.24	-0.9
1,981,167	+		DDA3937_RS08770	0.24	-2.2
1,981,168	-		DDA3937_RS08770	0.25	+0.5
1,981,168	-		DDA3937_RS08770	0.25	-0.8
1,981,208	+		DDA3937_RS08770	0.28	-0.9
1,981,208	+		DDA3937_RS08770	0.28	-1.3
1,981,209	-		DDA3937_RS08770	0.28	-1.4
1,981,209	-		DDA3937_RS08770	0.28	-0.8
1,981,260	+		DDA3937_RS08770	0.32	+2.1
1,981,274	+				+1.1
1,981,274	+		DDA3937_RS08770	0.34	-0.6
1,981,274	+		DDA3937_RS08770	0.34	-2.1
1,981,274	+		DDA3937_RS08770	0.34	+0.9
1,981,274	+		DDA3937_RS08770	0.34	+0.4
1,981,275	-		DDA3937_RS08770	0.34	-0.4
1,981,275	-		DDA3937_RS08770	0.34	+0.7
1,981,278	+		DDA3937_RS08770	0.34	-0.9
1,981,278	+		DDA3937_RS08770	0.34	-1.6
1,981,278	+		DDA3937_RS08770	0.34	-0.7
1,981,278	+				+0.7
1,981,279	-		DDA3937_RS08770	0.34	+0.5
1,981,336	-		DDA3937_RS08770	0.39	-0.6
1,981,336	-		DDA3937_RS08770	0.39	+0.0
1,981,383	+		DDA3937_RS08770	0.43	-0.5
1,981,383	+		DDA3937_RS08770	0.43	-0.8
1,981,383	+		DDA3937_RS08770	0.43	-0.9
1,981,389	+		DDA3937_RS08770	0.43	-0.9
1,981,397	-		DDA3937_RS08770	0.44	+1.1
1,981,412	+		DDA3937_RS08770	0.45	-0.1
1,981,412	+		DDA3937_RS08770	0.45	-0.1
1,981,459	+		DDA3937_RS08770	0.49	-0.6
1,981,459	+		DDA3937_RS08770	0.49	-1.5
1,981,459	+		DDA3937_RS08770	0.49	+0.9
1,981,460	-		DDA3937_RS08770	0.50	-2.1
1,981,460	-		DDA3937_RS08770	0.50	-0.7
1,981,460	-		DDA3937_RS08770	0.50	-0.1
1,981,467	+		DDA3937_RS08770	0.50	-1.5
1,981,467	+		DDA3937_RS08770	0.50	-0.2
1,981,494	+		DDA3937_RS08770	0.52	-1.9
1,981,494	+		DDA3937_RS08770	0.52	-0.7
1,981,494	+		DDA3937_RS08770	0.52	-0.9
1,981,494	+				+1.4
1,981,494	+		DDA3937_RS08770	0.52	-1.0
1,981,494	+		DDA3937_RS08770	0.52	-0.3
1,981,495	-		DDA3937_RS08770	0.53	+0.4
1,981,495	-		DDA3937_RS08770	0.53	-2.9
1,981,495	-		DDA3937_RS08770	0.53	+0.0
1,981,495	-		DDA3937_RS08770	0.53	-1.2
1,981,495	-		DDA3937_RS08770	0.53	+1.5
1,981,496	+		DDA3937_RS08770	0.53	-1.5
1,981,497	-		DDA3937_RS08770	0.53	-2.7
1,981,568	+		DDA3937_RS08770	0.59	-0.3
1,981,569	-		DDA3937_RS08770	0.59	-0.5
1,981,569	-		DDA3937_RS08770	0.59	-0.1
1,981,569	-		DDA3937_RS08770	0.59	-0.9
1,981,794	+		DDA3937_RS08770	0.78	-1.4
1,981,794	+		DDA3937_RS08770	0.78	-1.7
1,981,795	-		DDA3937_RS08770	0.78	-0.9
1,981,795	-		DDA3937_RS08770	0.78	-0.3
1,981,795	-		DDA3937_RS08770	0.78	-0.4
1,981,799	+		DDA3937_RS08770	0.79	+0.1
1,981,799	+		DDA3937_RS08770	0.79	+0.5
1,981,799	+		DDA3937_RS08770	0.79	-0.6
1,981,816	-		DDA3937_RS08770	0.80	+0.3
1,981,859	+		DDA3937_RS08770	0.84	+0.1
1,981,914	+		DDA3937_RS08770	0.88	-0.7
1,981,915	-		DDA3937_RS08770	0.89	+4.3
1,981,915	-		DDA3937_RS08770	0.89	-1.6
1,981,915	-		DDA3937_RS08770	0.89	+0.4
1,981,917	+		DDA3937_RS08770	0.89	-1.3
1,981,917	+		DDA3937_RS08770	0.89	-1.5
1,981,917	+		DDA3937_RS08770	0.89	-1.5
1,981,917	+		DDA3937_RS08770	0.89	-3.9
1,981,917	+		DDA3937_RS08770	0.89	+0.1
1,981,917	+		DDA3937_RS08770	0.89	+1.8
1,981,918	-		DDA3937_RS08770	0.89	-0.8
1,981,918	-		DDA3937_RS08770	0.89	+1.1
1,981,918	-		DDA3937_RS08770	0.89	-0.7
1,981,918	-		DDA3937_RS08770	0.89	+1.1
1,981,918	-		DDA3937_RS08770	0.89	-0.1
1,981,918	-		DDA3937_RS08770	0.89	+0.8
1,981,919	+		DDA3937_RS08770	0.89	+0.1
1,981,919	+		DDA3937_RS08770	0.89	-1.1
1,981,919	+		DDA3937_RS08770	0.89	+0.7
1,981,919	+		DDA3937_RS08770	0.89	-1.3
1,981,919	+		DDA3937_RS08770	0.89	+0.1
1,981,920	-		DDA3937_RS08770	0.89	+0.4
1,981,920	-		DDA3937_RS08770	0.89	-1.2
1,981,935	+				-0.0
1,982,010	+				-0.5
1,982,010	+				-0.2
1,982,010	+				-0.8
1,982,010	+				-0.1
1,982,020	+				-1.6
1,982,040	-				-0.0
1,982,129	-				+0.6
1,982,129	-				+0.1
1,982,153	-				-1.3
1,982,153	-				-0.8
1,982,241	+				-0.8
1,982,241	+				-0.7
1,982,241	+				+0.5
1,982,241	+				-0.6
1,982,242	-				-0.4
1,982,242	-				+3.7
1,982,248	+				+0.0
1,982,248	+				+0.6
1,982,249	-				+0.5
1,982,249	-				-2.0
1,982,249	-				+3.1
1,982,249	-				-0.6
1,982,318	-				-0.2
1,982,326	+				+0.1
1,982,326	+				-0.0
1,982,326	+				+0.7
1,982,326	+				-1.7
1,982,326	+				-0.2
1,982,326	+				+1.0
1,982,326	+				-1.4
1,982,327	-				-1.2
1,982,327	-				-0.8
1,982,327	-				+0.3
1,982,327	-				-1.7
1,982,327	-				+0.5
1,982,327	-				-0.5
1,982,327	-				-0.1
1,982,327	-				+0.5
1,982,327	-				-0.5
1,982,327	-				+0.3
1,982,327	-				-0.0
1,982,336	+				+0.1
1,982,337	-				-1.1
1,982,503	+		DDA3937_RS08775	0.27	+0.6
1,982,503	+		DDA3937_RS08775	0.27	+0.6
1,982,504	-		DDA3937_RS08775	0.27	-0.5
1,982,504	-		DDA3937_RS08775	0.27	-0.0
1,982,504	-		DDA3937_RS08775	0.27	-0.4
1,982,504	-		DDA3937_RS08775	0.27	-0.7
1,982,504	-		DDA3937_RS08775	0.27	-0.2
1,982,504	-		DDA3937_RS08775	0.27	+0.9
1,982,706	+		DDA3937_RS08775	0.48	+0.2
1,982,706	+		DDA3937_RS08775	0.48	-0.9
1,982,706	+		DDA3937_RS08775	0.48	-1.4
1,982,706	+		DDA3937_RS08775	0.48	+0.4
1,982,706	+		DDA3937_RS08775	0.48	+0.6
1,982,707	-		DDA3937_RS08775	0.48	-0.1
1,982,707	-		DDA3937_RS08775	0.48	-0.6
1,982,787	+		DDA3937_RS08775	0.56	-0.3
1,982,787	+		DDA3937_RS08775	0.56	+0.7
1,982,860	+		DDA3937_RS08775	0.64	-0.5
1,982,861	-		DDA3937_RS08775	0.64	-1.7
1,982,895	+		DDA3937_RS08775	0.67	-0.2
1,982,938	+		DDA3937_RS08775	0.72	-0.4
1,983,023	+		DDA3937_RS08775	0.81	+2.1
1,983,023	+		DDA3937_RS08775	0.81	-2.4