Strain Fitness in Dickeya dadantii 3937

Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS08185

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	Upstate
				remove
1,852,212	+	DDA3937_RS08180	0.12	-0.9
1,852,258	+	DDA3937_RS08180	0.16	-1.0
1,852,258	+	DDA3937_RS08180	0.16	-1.1
1,852,258	+	DDA3937_RS08180	0.16	+0.7
1,852,258	+	DDA3937_RS08180	0.16	-0.4
1,852,258	+	DDA3937_RS08180	0.16	-0.1
1,852,260	+	DDA3937_RS08180	0.17	-0.5
1,852,261	-	DDA3937_RS08180	0.17	-1.7
1,852,261	-	DDA3937_RS08180	0.17	-0.8
1,852,273	-	DDA3937_RS08180	0.18	-0.1
1,852,369	-	DDA3937_RS08180	0.28	+0.5
1,852,387	+	DDA3937_RS08180	0.29	-0.5
1,852,387	+	DDA3937_RS08180	0.29	-0.5
1,852,387	+	DDA3937_RS08180	0.29	-1.8
1,852,387	+	DDA3937_RS08180	0.29	-1.4
1,852,387	+	DDA3937_RS08180	0.29	+1.1
1,852,387	+	DDA3937_RS08180	0.29	+0.1
1,852,388	-	DDA3937_RS08180	0.29	-2.1
1,852,388	-	DDA3937_RS08180	0.29	-0.5
1,852,388	-	DDA3937_RS08180	0.29	-1.9
1,852,388	-	DDA3937_RS08180	0.29	-0.2
1,852,388	-	DDA3937_RS08180	0.29	-0.2
1,852,388	-	DDA3937_RS08180	0.29	-2.1
1,852,388	-	DDA3937_RS08180	0.29	+0.4
1,852,415	-	DDA3937_RS08180	0.32	+0.4
1,852,415	-	DDA3937_RS08180	0.32	-1.5
1,852,422	+	DDA3937_RS08180	0.33	+0.3
1,852,423	-			-0.9
1,852,628	+	DDA3937_RS08180	0.53	-0.7
1,852,629	-	DDA3937_RS08180	0.53	-0.1
1,852,629	-	DDA3937_RS08180	0.53	-0.6
1,852,629	-	DDA3937_RS08180	0.53	-0.2
1,852,630	+	DDA3937_RS08180	0.54	+0.7
1,852,630	+	DDA3937_RS08180	0.54	+0.1
1,852,630	+	DDA3937_RS08180	0.54	-3.3
1,852,630	+	DDA3937_RS08180	0.54	-0.8
1,852,630	+	DDA3937_RS08180	0.54	-1.0
1,852,630	+	DDA3937_RS08180	0.54	+0.3
1,852,631	-	DDA3937_RS08180	0.54	-0.6
1,852,631	-	DDA3937_RS08180	0.54	+0.5
1,852,631	-	DDA3937_RS08180	0.54	-0.1
1,852,631	-	DDA3937_RS08180	0.54	-0.0
1,852,631	-	DDA3937_RS08180	0.54	+0.6
1,852,631	-	DDA3937_RS08180	0.54	-0.3
1,852,631	-	DDA3937_RS08180	0.54	-1.3
1,852,631	-	DDA3937_RS08180	0.54	-1.7
1,852,631	-	DDA3937_RS08180	0.54	+0.6
1,852,631	-	DDA3937_RS08180	0.54	-0.3
1,852,631	-	DDA3937_RS08180	0.54	-0.3
1,852,632	+	DDA3937_RS08180	0.54	-0.7
1,852,632	+	DDA3937_RS08180	0.54	-0.1
1,852,632	+	DDA3937_RS08180	0.54	+0.4
1,852,632	+	DDA3937_RS08180	0.54	-1.7
1,852,632	+	DDA3937_RS08180	0.54	-1.1
1,852,632	+	DDA3937_RS08180	0.54	-1.2
1,852,632	+	DDA3937_RS08180	0.54	-0.9
1,852,632	+	DDA3937_RS08180	0.54	-1.0
1,852,632	+	DDA3937_RS08180	0.54	-0.4
1,852,632	+	DDA3937_RS08180	0.54	-1.7
1,852,632	+	DDA3937_RS08180	0.54	+0.2
1,852,633	-	DDA3937_RS08180	0.54	-0.8
1,852,633	-	DDA3937_RS08180	0.54	+0.7
1,852,633	-	DDA3937_RS08180	0.54	-0.8
1,852,633	-	DDA3937_RS08180	0.54	+0.6
1,852,633	-	DDA3937_RS08180	0.54	-0.0
1,852,633	-	DDA3937_RS08180	0.54	+0.7
1,852,633	-	DDA3937_RS08180	0.54	-0.2
1,852,672	-	DDA3937_RS08180	0.58	+0.2
1,852,675	+	DDA3937_RS08180	0.58	+0.1
1,852,675	+	DDA3937_RS08180	0.58	-2.6
1,852,675	+	DDA3937_RS08180	0.58	-0.1
1,852,675	+	DDA3937_RS08180	0.58	-0.9
1,852,675	+	DDA3937_RS08180	0.58	-0.9
1,852,675	+	DDA3937_RS08180	0.58	-0.6
1,852,676	-	DDA3937_RS08180	0.58	+1.1
1,852,676	-	DDA3937_RS08180	0.58	-1.0
1,852,676	-	DDA3937_RS08180	0.58	+0.2
1,852,676	-	DDA3937_RS08180	0.58	+0.6
1,852,676	-			+1.1
1,852,681	+	DDA3937_RS08180	0.59	-0.6
1,852,682	-	DDA3937_RS08180	0.59	+0.3
1,852,683	+	DDA3937_RS08180	0.59	+1.3
1,852,683	+	DDA3937_RS08180	0.59	+0.3
1,852,683	+	DDA3937_RS08180	0.59	-0.6
1,852,683	+	DDA3937_RS08180	0.59	-0.4
1,852,684	-	DDA3937_RS08180	0.59	-0.1
1,852,737	+	DDA3937_RS08180	0.64	-0.9
1,852,737	+	DDA3937_RS08180	0.64	-1.7
1,852,738	-	DDA3937_RS08180	0.64	+0.5
1,852,738	-	DDA3937_RS08180	0.64	+1.2
1,852,738	-	DDA3937_RS08180	0.64	-1.4
1,852,738	-	DDA3937_RS08180	0.64	-1.7
1,852,738	-	DDA3937_RS08180	0.64	-1.7
1,852,738	-	DDA3937_RS08180	0.64	-0.5
1,852,738	-	DDA3937_RS08180	0.64	-1.8
1,852,739	+	DDA3937_RS08180	0.64	-0.2
1,852,739	+	DDA3937_RS08180	0.64	+0.4
1,852,739	+	DDA3937_RS08180	0.64	+0.3
1,852,740	-	DDA3937_RS08180	0.65	-0.1
1,852,740	-	DDA3937_RS08180	0.65	-2.0
1,852,740	-	DDA3937_RS08180	0.65	+0.8
1,852,740	-	DDA3937_RS08180	0.65	-1.8
1,852,749	+			-0.2
1,852,750	-	DDA3937_RS08180	0.66	+0.1
1,852,752	+	DDA3937_RS08180	0.66	+1.1
1,852,752	+	DDA3937_RS08180	0.66	-1.9
1,852,752	+	DDA3937_RS08180	0.66	-1.3
1,852,753	-	DDA3937_RS08180	0.66	-0.7
1,852,753	-	DDA3937_RS08180	0.66	-1.6
1,852,753	-	DDA3937_RS08180	0.66	-1.6
1,852,753	-	DDA3937_RS08180	0.66	-0.7
1,852,782	+	DDA3937_RS08180	0.69	+0.5
1,852,791	+	DDA3937_RS08180	0.70	-0.6
1,852,792	-	DDA3937_RS08180	0.70	-0.5
1,852,792	-	DDA3937_RS08180	0.70	+2.6
1,852,792	-	DDA3937_RS08180	0.70	-1.3
1,852,797	+	DDA3937_RS08180	0.70	-0.3
1,852,797	+	DDA3937_RS08180	0.70	-0.2
1,852,833	+	DDA3937_RS08180	0.74	-1.7
1,852,894	-	DDA3937_RS08180	0.80	+0.7
1,852,946	+	DDA3937_RS08180	0.85	-1.5
1,852,946	+	DDA3937_RS08180	0.85	-0.5
1,852,956	+	DDA3937_RS08180	0.86	-3.3
1,852,957	-	DDA3937_RS08180	0.86	-0.4
1,852,981	-	DDA3937_RS08180	0.89	+0.2
1,853,041	+			+0.0
1,853,046	+			-1.0
1,853,047	-			-1.3
1,853,088	+			+0.1
1,853,088	+			-0.7
1,853,089	-			+0.4
1,853,092	+			-0.1
1,853,097	+			-0.6
1,853,105	+			-0.8
1,853,106	-			-0.5
1,853,151	+			-0.7
1,853,185	+			+0.5
1,853,215	-			-0.2
1,853,242	+			+0.9
1,853,278	-	DDA3937_RS08185	0.12	-0.0
1,853,295	+	DDA3937_RS08185	0.13	-0.2
1,853,296	-	DDA3937_RS08185	0.13	-2.1
1,853,345	+	DDA3937_RS08185	0.18	-0.9
1,853,358	+			+0.4
1,853,358	+	DDA3937_RS08185	0.19	+1.1
1,853,358	+	DDA3937_RS08185	0.19	-0.0
1,853,358	+	DDA3937_RS08185	0.19	+0.6
1,853,359	-	DDA3937_RS08185	0.19	-0.1
1,853,359	-	DDA3937_RS08185	0.19	-0.5
1,853,359	-	DDA3937_RS08185	0.19	+0.9
1,853,359	-	DDA3937_RS08185	0.19	+0.5
1,853,359	-	DDA3937_RS08185	0.19	-0.2
1,853,359	-	DDA3937_RS08185	0.19	-0.8
1,853,359	-	DDA3937_RS08185	0.19	-0.2
1,853,374	+	DDA3937_RS08185	0.21	-0.3
1,853,374	+	DDA3937_RS08185	0.21	-0.6
1,853,374	+	DDA3937_RS08185	0.21	-1.7
1,853,375	-	DDA3937_RS08185	0.21	-0.2
1,853,375	-	DDA3937_RS08185	0.21	-1.1
1,853,460	+	DDA3937_RS08185	0.28	-1.5
1,853,461	-			+0.1
1,853,461	-	DDA3937_RS08185	0.28	-0.9
1,853,573	+	DDA3937_RS08185	0.39	-1.8
1,853,574	-	DDA3937_RS08185	0.39	+1.1
1,853,619	+	DDA3937_RS08185	0.43	-1.1
1,853,619	+	DDA3937_RS08185	0.43	-1.9
1,853,619	+	DDA3937_RS08185	0.43	+0.7
1,853,619	+	DDA3937_RS08185	0.43	+0.9
1,853,619	+	DDA3937_RS08185	0.43	-0.5
1,853,620	-	DDA3937_RS08185	0.43	-0.3
1,853,620	-	DDA3937_RS08185	0.43	-0.3
1,853,620	-	DDA3937_RS08185	0.43	-0.4
1,853,620	-	DDA3937_RS08185	0.43	-0.3
1,853,620	-	DDA3937_RS08185	0.43	-0.1
1,853,620	-	DDA3937_RS08185	0.43	-0.1
1,853,620	-	DDA3937_RS08185	0.43	-0.3
1,853,620	-	DDA3937_RS08185	0.43	-0.0
1,853,623	-	DDA3937_RS08185	0.43	+0.4
1,853,629	+	DDA3937_RS08185	0.44	-1.1
1,853,630	-	DDA3937_RS08185	0.44	-2.1
1,853,652	+	DDA3937_RS08185	0.46	+0.2
1,853,652	+	DDA3937_RS08185	0.46	-0.4
1,853,652	+	DDA3937_RS08185	0.46	+0.2
1,853,652	+	DDA3937_RS08185	0.46	-0.2
1,853,653	-	DDA3937_RS08185	0.46	-1.5
1,853,653	-			-1.5
1,853,653	-	DDA3937_RS08185	0.46	+0.1
1,853,653	-	DDA3937_RS08185	0.46	+0.4
1,853,729	+	DDA3937_RS08185	0.53	+1.7
1,853,729	+	DDA3937_RS08185	0.53	+0.4
1,853,730	-	DDA3937_RS08185	0.53	+1.1
1,853,730	-	DDA3937_RS08185	0.53	-0.9
1,853,730	-	DDA3937_RS08185	0.53	-2.0
1,853,730	-	DDA3937_RS08185	0.53	-1.9
1,853,730	-	DDA3937_RS08185	0.53	-0.8
1,853,730	-	DDA3937_RS08185	0.53	-1.2
1,853,730	-	DDA3937_RS08185	0.53	-0.1
1,853,860	+	DDA3937_RS08185	0.65	-2.3
1,853,862	+			-0.5
1,853,862	+	DDA3937_RS08185	0.65	+0.1
1,853,890	-	DDA3937_RS08185	0.68	-1.3
1,853,890	-	DDA3937_RS08185	0.68	-0.3
1,853,916	+	DDA3937_RS08185	0.70	-0.9
1,853,916	+	DDA3937_RS08185	0.70	-1.2
1,853,917	-	DDA3937_RS08185	0.70	-0.3
1,854,003	-	DDA3937_RS08185	0.78	-0.6
1,854,003	-	DDA3937_RS08185	0.78	-0.0
1,854,003	-	DDA3937_RS08185	0.78	-0.6
1,854,006	+	DDA3937_RS08185	0.78	-0.7
1,854,006	+	DDA3937_RS08185	0.78	+0.1
1,854,006	+	DDA3937_RS08185	0.78	-0.2
1,854,006	+	DDA3937_RS08185	0.78	+0.4
1,854,007	-	DDA3937_RS08185	0.78	-1.4
1,854,007	-	DDA3937_RS08185	0.78	+0.3
1,854,007	-	DDA3937_RS08185	0.78	+0.3
1,854,092	-	DDA3937_RS08185	0.86	-2.5
1,854,177	-			-0.6
1,854,177	-			+0.8
1,854,193	+			-0.2
1,854,248	+			-0.4
1,854,249	-			+1.0
1,854,249	-			-1.3
1,854,260	+			+0.1
1,854,262	+			-1.4
1,854,263	-			+0.4
1,854,263	-			+0.5
1,854,282	+			+0.1
1,854,282	+			+0.1
1,854,321	+			+0.5
1,854,322	-			+0.2
1,854,322	-			-0.8
1,854,322	-			+1.4
1,854,329	+			-0.3
1,854,329	+			-0.3
1,854,330	-			-0.1
1,854,330	-			+0.1
1,854,330	-			+0.6
1,854,335	+			-0.9
1,854,336	-			+0.1
1,854,364	+			-2.0
1,854,381	+			-0.2
1,854,424	-			+1.1
1,854,461	+			+0.0
1,854,461	+			-0.7
1,854,462	-			-0.4
1,854,637	-	DDA3937_RS08190	0.22	+0.8
1,854,637	-	DDA3937_RS08190	0.22	+0.4
1,854,659	+	DDA3937_RS08190	0.24	-0.2
1,854,660	-			+0.5
1,854,737	-	DDA3937_RS08190	0.31	+0.3
1,854,737	-	DDA3937_RS08190	0.31	-0.1
1,854,737	-	DDA3937_RS08190	0.31	-0.5
1,854,737	-	DDA3937_RS08190	0.31	+0.1
1,854,737	-	DDA3937_RS08190	0.31	+1.1
1,854,737	-	DDA3937_RS08190	0.31	-0.5
1,854,737	-	DDA3937_RS08190	0.31	-0.9
1,854,813	+	DDA3937_RS08190	0.38	+0.5
1,854,918	+	DDA3937_RS08190	0.47	-1.5
1,854,918	+	DDA3937_RS08190	0.47	-0.7
1,854,918	+	DDA3937_RS08190	0.47	-0.2
1,854,918	+	DDA3937_RS08190	0.47	+0.1
1,854,919	-	DDA3937_RS08190	0.47	-1.8
1,854,919	-	DDA3937_RS08190	0.47	+1.2
1,854,919	-	DDA3937_RS08190	0.47	-0.6
1,854,919	-	DDA3937_RS08190	0.47	+1.1
1,854,919	-	DDA3937_RS08190	0.47	+0.2
1,854,957	+	DDA3937_RS08190	0.50	-1.5
1,854,957	+	DDA3937_RS08190	0.50	-0.1
1,854,958	-	DDA3937_RS08190	0.50	-0.0
1,854,958	-	DDA3937_RS08190	0.50	+0.2
1,854,966	+	DDA3937_RS08190	0.51	-0.1
1,854,966	+	DDA3937_RS08190	0.51	-0.3
1,854,966	+	DDA3937_RS08190	0.51	-1.7

Or see this region's nucleotide sequence