Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS07280

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,641,553	-				+0.4
1,641,565	+				-0.4
1,641,565	+				-1.6
1,641,566	-				+0.4
1,641,570	-				-0.2
1,641,570	-				-0.7
1,641,570	-				+0.6
1,641,570	-				-0.4
1,641,570	-				+1.2
1,641,586	-				-1.6
1,641,586	-				-0.2
1,641,588	+				-0.1
1,641,588	+				+0.1
1,641,588	+				+0.7
1,641,588	+				-1.0
1,641,589	-				-0.6
1,641,603	+				-0.6
1,641,603	+				+0.2
1,641,603	+				+1.4
1,641,603	+				-0.7
1,641,603	+				-1.6
1,641,603	+				-0.6
1,641,604	-				+0.5
1,641,604	-				-0.7
1,641,604	-				+2.6
1,641,604	-				-2.6
1,641,604	-				-1.0
1,641,604	-				-1.0
1,641,604	-				-1.2
1,641,604	-				-1.1
1,641,604	-				-0.7
1,641,604	-				-2.6
1,641,604	-				-0.6
1,641,605	+				-1.1
1,641,605	+				+0.5
1,641,606	-				-0.3
1,641,606	-				-0.3
1,641,635	-				+0.4
1,641,645	-				-0.6
1,641,645	-				-0.8
1,641,645	-				-3.0
1,641,647	+				-0.1
1,641,648	-				-2.8
1,641,648	-				-1.5
1,641,651	-				-0.8
1,641,676	-				-0.4
1,641,703	+				-0.1
1,641,704	-				-1.0
1,641,705	+				-0.8
1,641,732	+				-0.3
1,641,732	+				-0.6
1,641,733	-				-1.4
1,641,733	-				+0.2
1,641,733	-				-0.4
1,641,766	+		DDA3937_RS07275	0.13	-0.2
1,641,766	+		DDA3937_RS07275	0.13	-1.0
1,641,766	+		DDA3937_RS07275	0.13	+0.8
1,641,766	+		DDA3937_RS07275	0.13	-0.4
1,641,766	+		DDA3937_RS07275	0.13	-2.4
1,641,766	+		DDA3937_RS07275	0.13	-0.5
1,641,766	+		DDA3937_RS07275	0.13	+0.4
1,641,767	-		DDA3937_RS07275	0.13	-2.4
1,641,767	-		DDA3937_RS07275	0.13	+1.1
1,641,767	-		DDA3937_RS07275	0.13	+0.8
1,641,767	-		DDA3937_RS07275	0.13	-0.5
1,641,823	+		DDA3937_RS07275	0.20	+0.6
1,641,824	-		DDA3937_RS07275	0.20	-0.8
1,641,829	-		DDA3937_RS07275	0.21	-0.8
1,641,859	+		DDA3937_RS07275	0.24	-0.4
1,641,859	+		DDA3937_RS07275	0.24	+1.9
1,641,859	+		DDA3937_RS07275	0.24	-0.9
1,641,860	-		DDA3937_RS07275	0.24	-0.9
1,641,860	-		DDA3937_RS07275	0.24	-2.0
1,641,860	-		DDA3937_RS07275	0.24	-1.0
1,641,861	+		DDA3937_RS07275	0.25	-0.3
1,641,862	-		DDA3937_RS07275	0.25	+0.4
1,641,862	-		DDA3937_RS07275	0.25	+0.3
1,641,862	-		DDA3937_RS07275	0.25	-0.8
1,641,919	+		DDA3937_RS07275	0.32	-1.1
1,641,919	+		DDA3937_RS07275	0.32	-0.8
1,641,919	+		DDA3937_RS07275	0.32	+0.2
1,641,920	-		DDA3937_RS07275	0.32	-1.2
1,641,983	+		DDA3937_RS07275	0.40	-1.8
1,642,021	+		DDA3937_RS07275	0.45	+0.2
1,642,021	+		DDA3937_RS07275	0.45	-0.2
1,642,021	+		DDA3937_RS07275	0.45	-0.8
1,642,021	+		DDA3937_RS07275	0.45	-0.8
1,642,022	-		DDA3937_RS07275	0.45	-0.8
1,642,103	+		DDA3937_RS07275	0.55	-0.9
1,642,125	+		DDA3937_RS07275	0.58	-1.5
1,642,125	+		DDA3937_RS07275	0.58	-0.1
1,642,125	+		DDA3937_RS07275	0.58	+0.1
1,642,125	+		DDA3937_RS07275	0.58	-2.3
1,642,125	+		DDA3937_RS07275	0.58	-0.4
1,642,148	-		DDA3937_RS07275	0.61	+0.6
1,642,159	+		DDA3937_RS07275	0.62	-0.2
1,642,160	-		DDA3937_RS07275	0.62	+0.2
1,642,160	-		DDA3937_RS07275	0.62	+0.3
1,642,160	-		DDA3937_RS07275	0.62	+1.8
1,642,160	-		DDA3937_RS07275	0.62	-1.4
1,642,160	-		DDA3937_RS07275	0.62	-0.5
1,642,181	-		DDA3937_RS07275	0.65	+0.2
1,642,241	-		DDA3937_RS07275	0.72	+0.2
1,642,251	-		DDA3937_RS07275	0.73	-0.3
1,642,357	+		DDA3937_RS07275	0.87	-0.1
1,642,381	+		DDA3937_RS07275	0.90	-1.7
1,642,421	+				-1.4
1,642,441	+				+0.2
1,642,468	+				-0.4
1,642,479	+				-1.3
1,642,479	+				-0.8
1,642,479	+				-0.8
1,642,480	-				-1.1
1,642,483	-				+0.4
1,642,489	-				-0.2
1,642,489	-				+0.0
1,642,491	+				-1.7
1,642,491	+				-1.6
1,642,491	+				+0.2
1,642,491	+				+2.2
1,642,492	-				+0.2
1,642,492	-				-1.0
1,642,492	-				-2.3
1,642,545	-				+0.5
1,642,584	+				-0.1
1,642,585	-				-0.4
1,642,616	+				-2.2
1,642,647	-				-0.2
1,642,664	-				-0.5
1,642,672	+				-0.6
1,642,673	-				+0.6
1,642,675	+				-0.6
1,642,675	+				-0.8
1,642,676	-				-0.1
1,642,689	-				-0.3
1,642,715	-		DDA3937_RS07280	0.11	+0.8
1,642,805	+		DDA3937_RS07280	0.16	+1.7
1,642,806	-		DDA3937_RS07280	0.16	-1.4
1,642,806	-		DDA3937_RS07280	0.16	-0.6
1,642,807	+		DDA3937_RS07280	0.17	-1.8
1,642,808	-		DDA3937_RS07280	0.17	-3.1
1,642,818	+		DDA3937_RS07280	0.17	-0.5
1,642,838	-		DDA3937_RS07280	0.18	-2.7
1,642,881	+		DDA3937_RS07280	0.21	-0.4
1,642,881	+		DDA3937_RS07280	0.21	-2.0
1,642,897	+		DDA3937_RS07280	0.22	+1.2
1,642,902	-		DDA3937_RS07280	0.23	-0.2
1,642,943	-		DDA3937_RS07280	0.25	-0.2
1,642,994	+		DDA3937_RS07280	0.28	-0.2
1,643,069	-		DDA3937_RS07280	0.33	-3.1
1,643,093	+		DDA3937_RS07280	0.35	-0.2
1,643,097	+		DDA3937_RS07280	0.35	-0.1
1,643,097	+		DDA3937_RS07280	0.35	-1.2
1,643,097	+		DDA3937_RS07280	0.35	-0.3
1,643,097	+		DDA3937_RS07280	0.35	+0.6
1,643,098	-		DDA3937_RS07280	0.35	-0.5
1,643,098	-		DDA3937_RS07280	0.35	-1.6
1,643,098	-		DDA3937_RS07280	0.35	-0.3
1,643,098	-		DDA3937_RS07280	0.35	-0.5
1,643,098	-		DDA3937_RS07280	0.35	-0.6
1,643,128	+		DDA3937_RS07280	0.37	+1.7
1,643,129	-		DDA3937_RS07280	0.37	+1.2
1,643,141	+		DDA3937_RS07280	0.38	-0.8
1,643,142	-		DDA3937_RS07280	0.38	-1.4
1,643,142	-		DDA3937_RS07280	0.38	-0.7
1,643,164	+		DDA3937_RS07280	0.39	-0.4
1,643,164	+		DDA3937_RS07280	0.39	-2.1
1,643,165	-		DDA3937_RS07280	0.39	-0.5
1,643,165	-		DDA3937_RS07280	0.39	-2.4
1,643,168	+		DDA3937_RS07280	0.39	-0.3
1,643,169	-		DDA3937_RS07280	0.39	-0.3
1,643,169	-				+0.8
1,643,169	-		DDA3937_RS07280	0.39	-0.2
1,643,287	+		DDA3937_RS07280	0.47	-0.0
1,643,407	+		DDA3937_RS07280	0.55	-0.7
1,643,432	+		DDA3937_RS07280	0.56	-1.6
1,643,432	+		DDA3937_RS07280	0.56	-0.6
1,643,468	-		DDA3937_RS07280	0.58	-0.7
1,643,551	+		DDA3937_RS07280	0.64	-0.4
1,643,657	+		DDA3937_RS07280	0.70	-0.1
1,643,657	+		DDA3937_RS07280	0.70	-1.0
1,643,657	+		DDA3937_RS07280	0.70	-0.8
1,643,657	+		DDA3937_RS07280	0.70	-1.2
1,643,658	-		DDA3937_RS07280	0.71	-0.1
1,643,658	-		DDA3937_RS07280	0.71	-0.4
1,643,658	-		DDA3937_RS07280	0.71	+0.2
1,643,658	-		DDA3937_RS07280	0.71	+0.1
1,643,658	-		DDA3937_RS07280	0.71	+0.2
1,643,658	-		DDA3937_RS07280	0.71	+0.6
1,643,658	-		DDA3937_RS07280	0.71	-0.8
1,643,658	-		DDA3937_RS07280	0.71	+0.2
1,643,660	-		DDA3937_RS07280	0.71	-1.2
1,643,737	+		DDA3937_RS07280	0.76	+1.2
1,643,737	+		DDA3937_RS07280	0.76	-0.8
1,643,738	-		DDA3937_RS07280	0.76	+0.6
1,643,738	-		DDA3937_RS07280	0.76	-1.1
1,643,738	-		DDA3937_RS07280	0.76	-0.5
1,643,802	-		DDA3937_RS07280	0.80	-3.6
1,643,840	+		DDA3937_RS07280	0.82	-1.2
1,643,840	+		DDA3937_RS07280	0.82	-1.3
1,643,841	-		DDA3937_RS07280	0.82	+0.2
1,643,842	+		DDA3937_RS07280	0.82	-0.3
1,643,842	+		DDA3937_RS07280	0.82	-1.4
1,643,843	-		DDA3937_RS07280	0.82	-0.9
1,643,857	+		DDA3937_RS07280	0.83	-0.3
1,643,877	-		DDA3937_RS07280	0.84	-1.4
1,643,895	+		DDA3937_RS07280	0.86	-1.0
1,643,934	+		DDA3937_RS07280	0.88	+1.0
1,643,934	+		DDA3937_RS07280	0.88	+1.8
1,643,935	-		DDA3937_RS07280	0.88	-0.3
1,643,974	+				-1.6
1,643,975	-				+0.6
1,644,011	+				+0.4
1,644,011	+				+0.6
1,644,011	+				+1.5
1,644,012	-				+2.9
1,644,012	-				-1.9
1,644,014	-				+0.7
1,644,043	+				+0.2
1,644,047	+				+0.6
1,644,048	-				-0.3
1,644,077	-				-1.0
1,644,089	+				+0.2
1,644,089	+				+2.4
1,644,089	+				+2.2
1,644,203	+				-0.3
1,644,203	+				-2.4
1,644,204	-				-0.7
1,644,204	-				-1.4
1,644,204	-				-0.2
1,644,204	-				-0.0
1,644,219	+				+0.3
1,644,224	-				+0.2
1,644,224	-				+0.1
1,644,366	+		DDA3937_RS07285	0.18	+0.4
1,644,395	+		DDA3937_RS07285	0.22	-1.1
1,644,396	-		DDA3937_RS07285	0.22	-0.9
1,644,396	-		DDA3937_RS07285	0.22	-0.6
1,644,396	-		DDA3937_RS07285	0.22	-0.6
1,644,396	-		DDA3937_RS07285	0.22	-2.1
1,644,399	+		DDA3937_RS07285	0.22	-0.8
1,644,400	-		DDA3937_RS07285	0.22	-0.6
1,644,400	-		DDA3937_RS07285	0.22	-0.7
1,644,400	-		DDA3937_RS07285	0.22	-0.3
1,644,400	-		DDA3937_RS07285	0.22	+1.5
1,644,417	+		DDA3937_RS07285	0.24	-1.6
1,644,417	+		DDA3937_RS07285	0.24	-1.5
1,644,418	-		DDA3937_RS07285	0.24	-1.2
1,644,446	-		DDA3937_RS07285	0.27	-0.6
1,644,463	-		DDA3937_RS07285	0.29	-0.8
1,644,476	-		DDA3937_RS07285	0.30	-0.5
1,644,500	+		DDA3937_RS07285	0.33	+0.1
1,644,500	+		DDA3937_RS07285	0.33	+0.2
1,644,501	-		DDA3937_RS07285	0.33	+0.6
1,644,577	+		DDA3937_RS07285	0.41	-1.2
1,644,632	-		DDA3937_RS07285	0.47	+0.2
1,644,752	+		DDA3937_RS07285	0.60	-1.1
1,644,752	+		DDA3937_RS07285	0.60	+1.3
1,644,764	+		DDA3937_RS07285	0.61	-0.5
1,644,764	+		DDA3937_RS07285	0.61	+0.5
1,644,764	+		DDA3937_RS07285	0.61	-1.6
1,644,764	+		DDA3937_RS07285	0.61	-0.4
1,644,764	+		DDA3937_RS07285	0.61	-1.8
1,644,764	+		DDA3937_RS07285	0.61	-1.6
1,644,764	+		DDA3937_RS07285	0.61	-2.0
1,644,765	-		DDA3937_RS07285	0.61	+0.7
1,644,765	-		DDA3937_RS07285	0.61	-0.3
1,644,765	-		DDA3937_RS07285	0.61	-1.8
1,644,765	-		DDA3937_RS07285	0.61	-0.8
1,644,765	-		DDA3937_RS07285	0.61	+0.3
1,644,765	-		DDA3937_RS07285	0.61	+0.5
1,644,765	-		DDA3937_RS07285	0.61	-1.0
1,644,765	-		DDA3937_RS07285	0.61	-0.9
1,644,765	-		DDA3937_RS07285	0.61	-2.9
1,644,765	-		DDA3937_RS07285	0.61	-0.3
1,644,765	-		DDA3937_RS07285	0.61	-3.6
1,644,765	-		DDA3937_RS07285	0.61	-1.2
1,644,766	+		DDA3937_RS07285	0.61	-1.2
1,644,787	+		DDA3937_RS07285	0.64	-0.2
1,644,787	+		DDA3937_RS07285	0.64	-0.4
1,644,787	+		DDA3937_RS07285	0.64	-1.2
1,644,787	+		DDA3937_RS07285	0.64	-0.6
1,644,787	+		DDA3937_RS07285	0.64	-0.2
1,644,787	+		DDA3937_RS07285	0.64	-1.2
1,644,788	-		DDA3937_RS07285	0.64	-2.2
1,644,788	-		DDA3937_RS07285	0.64	-0.1
1,644,788	-				-0.8
1,644,788	-		DDA3937_RS07285	0.64	-0.5
1,644,788	-		DDA3937_RS07285	0.64	-0.1
1,644,788	-		DDA3937_RS07285	0.64	+1.3
1,644,788	-		DDA3937_RS07285	0.64	-0.8
1,644,788	-		DDA3937_RS07285	0.64	+1.5
1,644,788	-		DDA3937_RS07285	0.64	+0.1
1,644,788	-		DDA3937_RS07285	0.64	-0.4
1,644,788	-		DDA3937_RS07285	0.64	-0.8
1,644,797	-		DDA3937_RS07285	0.65	-0.4
1,644,812	+		DDA3937_RS07285	0.66	-0.1
1,644,813	-		DDA3937_RS07285	0.66	+1.2
1,644,956	-		DDA3937_RS07285	0.82	-0.7
1,645,031	+		DDA3937_RS07285	0.90	-1.2
1,645,031	+		DDA3937_RS07285	0.90	-0.6
1,645,032	-		DDA3937_RS07285	0.90	-0.2
1,645,032	-		DDA3937_RS07285	0.90	-1.4
1,645,032	-		DDA3937_RS07285	0.90	+1.3