Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS06940

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,552,155	+		DDA3937_RS06935	0.41	-0.9
1,552,155	+		DDA3937_RS06935	0.41	-0.6
1,552,156	-		DDA3937_RS06935	0.41	-0.3
1,552,217	+		DDA3937_RS06935	0.45	-0.4
1,552,218	-		DDA3937_RS06935	0.45	-2.7
1,552,223	+		DDA3937_RS06935	0.45	-1.3
1,552,223	+		DDA3937_RS06935	0.45	+0.5
1,552,286	-		DDA3937_RS06935	0.49	+3.7
1,552,384	+		DDA3937_RS06935	0.56	-1.1
1,552,384	+		DDA3937_RS06935	0.56	+0.1
1,552,385	-		DDA3937_RS06935	0.56	-1.1
1,552,407	+		DDA3937_RS06935	0.57	-0.4
1,552,407	+				-0.7
1,552,448	+		DDA3937_RS06935	0.60	+0.2
1,552,448	+		DDA3937_RS06935	0.60	-2.8
1,552,448	+		DDA3937_RS06935	0.60	+0.3
1,552,449	-		DDA3937_RS06935	0.60	-0.7
1,552,452	+		DDA3937_RS06935	0.60	-0.1
1,552,452	+		DDA3937_RS06935	0.60	+0.3
1,552,453	-		DDA3937_RS06935	0.60	-1.3
1,552,453	-		DDA3937_RS06935	0.60	-0.1
1,552,473	+		DDA3937_RS06935	0.62	-0.3
1,552,474	-		DDA3937_RS06935	0.62	-0.2
1,552,494	+		DDA3937_RS06935	0.63	-1.1
1,552,495	-		DDA3937_RS06935	0.63	+0.3
1,552,498	-		DDA3937_RS06935	0.63	-0.0
1,552,500	+		DDA3937_RS06935	0.64	-0.9
1,552,500	+		DDA3937_RS06935	0.64	-0.5
1,552,501	-		DDA3937_RS06935	0.64	-1.8
1,552,501	-		DDA3937_RS06935	0.64	+0.8
1,552,524	+		DDA3937_RS06935	0.65	-0.6
1,552,524	+		DDA3937_RS06935	0.65	+0.0
1,552,587	+		DDA3937_RS06935	0.69	-1.0
1,552,587	+		DDA3937_RS06935	0.69	+0.5
1,552,588	-		DDA3937_RS06935	0.69	+0.5
1,552,588	-		DDA3937_RS06935	0.69	+0.2
1,552,588	-		DDA3937_RS06935	0.69	+0.5
1,552,664	+		DDA3937_RS06935	0.74	-0.6
1,552,671	-		DDA3937_RS06935	0.75	+0.1
1,552,743	+		DDA3937_RS06935	0.80	+2.5
1,552,808	+		DDA3937_RS06935	0.84	+0.9
1,552,808	+		DDA3937_RS06935	0.84	-0.5
1,552,809	-		DDA3937_RS06935	0.84	+0.3
1,552,809	-		DDA3937_RS06935	0.84	+0.9
1,552,809	-		DDA3937_RS06935	0.84	+1.0
1,552,809	-		DDA3937_RS06935	0.84	-0.1
1,552,815	+		DDA3937_RS06935	0.84	-1.1
1,552,815	+		DDA3937_RS06935	0.84	-1.7
1,552,815	+		DDA3937_RS06935	0.84	-0.2
1,552,815	+		DDA3937_RS06935	0.84	+1.0
1,552,815	+		DDA3937_RS06935	0.84	+1.3
1,552,816	-		DDA3937_RS06935	0.84	+1.5
1,552,816	-		DDA3937_RS06935	0.84	+3.9
1,552,816	-		DDA3937_RS06935	0.84	-0.4
1,552,816	-		DDA3937_RS06935	0.84	-0.2
1,552,816	-		DDA3937_RS06935	0.84	-0.3
1,552,816	-		DDA3937_RS06935	0.84	+1.3
1,552,902	+				-0.2
1,552,902	+				-0.1
1,552,902	+				-1.2
1,552,902	+				+0.3
1,552,902	+				-0.2
1,552,902	+				+0.6
1,552,902	+				-1.7
1,552,903	-				-1.5
1,552,903	-				-0.1
1,552,903	-				-1.1
1,552,953	+				+0.3
1,552,953	+				-0.6
1,552,953	+				+0.7
1,552,954	-				+0.4
1,552,954	-				-1.2
1,552,956	+				-1.1
1,552,956	+				+0.5
1,552,956	+				+0.0
1,552,957	-				-0.7
1,552,957	-				-1.1
1,552,957	-				+0.8
1,552,957	-				+0.0
1,552,970	+				+0.3
1,553,036	+				-0.3
1,553,036	+				-0.2
1,553,037	-				+0.3
1,553,084	+				+0.1
1,553,084	+				+0.8
1,553,084	+				-0.0
1,553,085	-				-0.8
1,553,085	-				+1.3
1,553,117	+				+0.0
1,553,117	+				-1.6
1,553,117	+				+0.7
1,553,118	-				-1.1
1,553,118	-				-1.0
1,553,122	+				+1.0
1,553,123	-				-0.4
1,553,208	+				+0.5
1,553,208	+				-1.1
1,553,208	+				-0.3
1,553,208	+				+0.5
1,553,209	-				+0.4
1,553,209	-				+0.3
1,553,209	-				-0.1
1,553,487	+		DDA3937_RS06940	0.27	+2.3
1,553,487	+		DDA3937_RS06940	0.27	-1.2
1,553,488	-		DDA3937_RS06940	0.28	+0.6
1,553,571	+		DDA3937_RS06940	0.33	+3.8
1,553,572	-		DDA3937_RS06940	0.33	-0.7
1,553,572	-		DDA3937_RS06940	0.33	-0.3
1,553,585	+		DDA3937_RS06940	0.34	-0.9
1,553,589	+				+1.6
1,553,590	-		DDA3937_RS06940	0.34	+1.6
1,553,590	-		DDA3937_RS06940	0.34	-0.0
1,553,722	+		DDA3937_RS06940	0.44	-1.5
1,553,755	-		DDA3937_RS06940	0.46	-0.5
1,553,860	-		DDA3937_RS06940	0.53	+2.9
1,553,925	+		DDA3937_RS06940	0.57	+1.3
1,553,925	+		DDA3937_RS06940	0.57	+0.1
1,553,925	+		DDA3937_RS06940	0.57	-1.1
1,553,925	+				+0.3
1,553,925	+		DDA3937_RS06940	0.57	-1.1
1,553,925	+		DDA3937_RS06940	0.57	-0.5
1,553,926	-		DDA3937_RS06940	0.58	-1.5
1,553,926	-		DDA3937_RS06940	0.58	-0.1
1,553,926	-		DDA3937_RS06940	0.58	+0.3
1,553,926	-		DDA3937_RS06940	0.58	+0.6
1,554,255	+		DDA3937_RS06940	0.80	+0.7
1,554,255	+		DDA3937_RS06940	0.80	-1.5
1,554,255	+		DDA3937_RS06940	0.80	+0.3
1,554,256	-		DDA3937_RS06940	0.80	-0.5
1,554,390	-		DDA3937_RS06940	0.89	-0.7
1,554,390	-		DDA3937_RS06940	0.89	-0.1
1,554,436	+				+0.4
1,554,437	-				-1.2
1,554,480	+				+0.3
1,554,480	+				+3.6
1,554,481	-				-2.2
1,554,481	-				+2.4
1,554,481	-				-1.2
1,554,481	-				+0.2
1,554,481	-				-0.4
1,554,481	-				+0.6
1,554,537	+				+0.8
1,554,537	+				-0.1
1,554,538	-				-0.5
1,554,538	-				+1.6
1,554,538	-				-0.9
1,554,538	-				-0.6
1,554,538	-				-0.5
1,554,538	-				-0.1
1,554,628	-				-0.2
1,554,665	+				+2.4
1,554,665	+				-0.2
1,554,666	-				+0.0
1,554,666	-				-0.6
1,554,685	+				-0.2
1,554,688	-				+1.1
1,554,730	+				-0.9
1,554,756	-				-0.7
1,554,785	+				+0.0
1,554,786	-				-0.0
1,554,817	-				+0.3
1,554,832	+				-1.7
1,554,832	+				-2.1
1,554,832	+				+0.8
1,554,832	+				-0.7
1,554,832	+				-0.6
1,554,832	+				-1.1
1,554,832	+				-1.2
1,554,832	+				-0.3
1,554,832	+				-0.2
1,554,832	+				-0.2
1,554,832	+				+0.9
1,554,864	+				-1.1
1,554,864	+				-1.5
1,554,864	+				+0.6
1,554,865	-				+1.5
1,554,865	-				-0.2
1,554,907	+		DDA3937_RS06945	0.17	-1.1
1,554,907	+		DDA3937_RS06945	0.17	-1.6
1,554,907	+		DDA3937_RS06945	0.17	-1.2
1,554,907	+		DDA3937_RS06945	0.17	-1.6
1,554,907	+		DDA3937_RS06945	0.17	-1.0
1,554,907	+		DDA3937_RS06945	0.17	+0.3
1,554,907	+		DDA3937_RS06945	0.17	+0.6
1,554,907	+		DDA3937_RS06945	0.17	-0.0
1,554,908	-		DDA3937_RS06945	0.18	-0.2
1,554,908	-		DDA3937_RS06945	0.18	+1.8
1,555,061	-		DDA3937_RS06945	0.47	-1.3
1,555,061	-		DDA3937_RS06945	0.47	+0.3
1,555,061	-		DDA3937_RS06945	0.47	+0.8
1,555,228	+		DDA3937_RS06945	0.79	-0.6
1,555,228	+		DDA3937_RS06945	0.79	-0.5
1,555,333	+				-0.9
1,555,420	+				+1.1
1,555,420	+				-2.2
1,555,421	-				-1.4
1,555,468	+				-0.7
1,555,469	-				-2.9
1,555,472	+				-0.6
1,555,473	-				+0.4
1,555,473	-				-0.2
1,555,530	+				-1.6