Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS05765

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,288,407	+				-0.4
1,288,407	+				-0.4
1,288,437	+				-0.7
1,288,447	-				-0.2
1,288,447	-				-0.0
1,288,495	-				+0.8
1,288,603	-		DDA3937_RS05755	0.34	-0.6
1,288,614	-		DDA3937_RS05755	0.40	-1.1
1,288,614	-		DDA3937_RS05755	0.40	+1.1
1,288,649	+		DDA3937_RS05755	0.59	+1.1
1,288,650	-		DDA3937_RS05755	0.60	-0.6
1,288,668	-		DDA3937_RS05755	0.69	-1.8
1,288,668	-		DDA3937_RS05755	0.69	-1.6
1,288,668	-		DDA3937_RS05755	0.69	+0.3
1,288,693	+		DDA3937_RS05755	0.83	-1.3
1,288,694	-		DDA3937_RS05755	0.84	+0.5
1,288,769	+				+0.1
1,288,769	+				+0.1
1,288,769	+				-0.7
1,288,769	+				+0.7
1,288,770	-				+2.2
1,288,779	+				-0.5
1,288,779	+				-0.1
1,288,983	+		DDA3937_RS05760	0.34	-0.5
1,288,984	-		DDA3937_RS05760	0.34	+0.5
1,288,992	+		DDA3937_RS05760	0.36	-1.5
1,289,144	+		DDA3937_RS05760	0.64	-1.8
1,289,144	+		DDA3937_RS05760	0.64	-0.9
1,289,144	+		DDA3937_RS05760	0.64	-0.7
1,289,144	+		DDA3937_RS05760	0.64	+1.1
1,289,144	+		DDA3937_RS05760	0.64	-1.0
1,289,144	+		DDA3937_RS05760	0.64	+0.0
1,289,145	-		DDA3937_RS05760	0.64	+1.6
1,289,145	-		DDA3937_RS05760	0.64	-1.5
1,289,145	-		DDA3937_RS05760	0.64	-0.8
1,289,145	-		DDA3937_RS05760	0.64	+0.8
1,289,145	-		DDA3937_RS05760	0.64	-0.5
1,289,145	-		DDA3937_RS05760	0.64	-0.5
1,289,148	+		DDA3937_RS05760	0.65	-0.8
1,289,148	+				-1.0
1,289,148	+		DDA3937_RS05760	0.65	-0.2
1,289,148	+		DDA3937_RS05760	0.65	-0.5
1,289,148	+		DDA3937_RS05760	0.65	-0.2
1,289,148	+		DDA3937_RS05760	0.65	-0.9
1,289,148	+		DDA3937_RS05760	0.65	-0.1
1,289,148	+		DDA3937_RS05760	0.65	-0.0
1,289,148	+		DDA3937_RS05760	0.65	-0.4
1,289,148	+		DDA3937_RS05760	0.65	+2.4
1,289,149	-		DDA3937_RS05760	0.65	-0.3
1,289,149	-		DDA3937_RS05760	0.65	-2.6
1,289,149	-		DDA3937_RS05760	0.65	+3.7
1,289,149	-		DDA3937_RS05760	0.65	-1.6
1,289,149	-		DDA3937_RS05760	0.65	+0.1
1,289,149	-		DDA3937_RS05760	0.65	+0.9
1,289,149	-		DDA3937_RS05760	0.65	-0.1
1,289,149	-		DDA3937_RS05760	0.65	+1.5
1,289,149	-		DDA3937_RS05760	0.65	-1.6
1,289,166	+		DDA3937_RS05760	0.68	-0.6
1,289,166	+		DDA3937_RS05760	0.68	-0.5
1,289,166	+		DDA3937_RS05760	0.68	+0.2
1,289,166	+		DDA3937_RS05760	0.68	+0.4
1,289,166	+		DDA3937_RS05760	0.68	-0.5
1,289,167	-		DDA3937_RS05760	0.68	-1.6
1,289,170	+		DDA3937_RS05760	0.69	-1.0
1,289,170	+		DDA3937_RS05760	0.69	-1.3
1,289,170	+		DDA3937_RS05760	0.69	-2.1
1,289,170	+		DDA3937_RS05760	0.69	+0.3
1,289,170	+		DDA3937_RS05760	0.69	-1.3
1,289,170	+		DDA3937_RS05760	0.69	+0.2
1,289,170	+		DDA3937_RS05760	0.69	-1.2
1,289,171	-		DDA3937_RS05760	0.69	+0.3
1,289,171	-		DDA3937_RS05760	0.69	-1.2
1,289,171	-		DDA3937_RS05760	0.69	+0.2
1,289,171	-		DDA3937_RS05760	0.69	-2.0
1,289,171	-		DDA3937_RS05760	0.69	-0.1
1,289,191	-		DDA3937_RS05760	0.73	-0.6
1,289,290	+				+0.7
1,289,369	+				-0.8
1,289,369	+				-0.6
1,289,370	-				-0.0
1,289,507	+		DDA3937_RS05765	0.14	+0.5
1,289,508	-		DDA3937_RS05765	0.14	-1.1
1,289,508	-		DDA3937_RS05765	0.14	-1.0
1,289,508	-		DDA3937_RS05765	0.14	+4.0
1,289,508	-		DDA3937_RS05765	0.14	-0.2
1,289,542	+		DDA3937_RS05765	0.18	-1.2
1,289,552	-		DDA3937_RS05765	0.20	-0.1
1,289,708	+		DDA3937_RS05765	0.40	+1.8
1,289,708	+		DDA3937_RS05765	0.40	-0.5
1,289,708	+		DDA3937_RS05765	0.40	+0.4
1,289,709	-		DDA3937_RS05765	0.40	-0.2
1,289,795	-		DDA3937_RS05765	0.51	-1.0
1,289,834	+		DDA3937_RS05765	0.56	-0.7
1,289,834	+		DDA3937_RS05765	0.56	-0.7
1,289,834	+		DDA3937_RS05765	0.56	-0.1
1,289,844	-				+0.4
1,289,844	-		DDA3937_RS05765	0.58	-0.6
1,289,844	-		DDA3937_RS05765	0.58	+0.4
1,289,854	+		DDA3937_RS05765	0.59	-1.2
1,289,888	+		DDA3937_RS05765	0.63	-0.6
1,289,889	-		DDA3937_RS05765	0.63	+1.0
1,290,069	+		DDA3937_RS05765	0.87	+0.4
1,290,070	-		DDA3937_RS05765	0.87	-0.1
1,290,070	-		DDA3937_RS05765	0.87	-1.0
1,290,172	+				-0.1
1,290,172	+				-0.9
1,290,172	+				+0.8
1,290,172	+				+0.2
1,290,172	+				+0.1
1,290,173	-				-0.1
1,290,173	-				+0.0
1,290,173	-				-0.6
1,290,192	-				-0.5
1,290,192	-				-0.8
1,290,207	+				+1.0
1,290,207	+				-0.3
1,290,207	+				+0.2
1,290,207	+				-0.3
1,290,207	+				-0.4
1,290,207	+				-1.5
1,290,207	+				-0.4
1,290,207	+				-0.2
1,290,207	+				-1.6
1,290,208	-				-1.0
1,290,208	-				-0.4
1,290,208	-				-1.1
1,290,208	-				-0.8
1,290,208	-				+0.4
1,290,208	-				-0.1
1,290,208	-				-0.1
1,290,294	+				-0.8
1,290,294	+				-0.2
1,290,295	-				+0.8
1,290,301	+				+1.0
1,290,301	+				-1.5
1,290,301	+				-0.1
1,290,302	-				-1.2
1,290,302	-				-0.2
1,290,432	+		DDA3937_RS05770	0.38	-0.8
1,290,433	-		DDA3937_RS05770	0.38	-1.2
1,290,444	+		DDA3937_RS05770	0.41	-0.7
1,290,466	-		DDA3937_RS05770	0.47	-0.2
1,290,539	+		DDA3937_RS05770	0.67	-0.5
1,290,572	+		DDA3937_RS05770	0.76	-1.1
1,290,572	+		DDA3937_RS05770	0.76	-0.4
1,290,573	-		DDA3937_RS05770	0.76	-2.4
1,290,573	-		DDA3937_RS05770	0.76	-1.8
1,290,573	-		DDA3937_RS05770	0.76	-0.1
1,290,616	+		DDA3937_RS05770	0.88	-1.2
1,290,623	+				+0.6
1,290,623	+				-2.5
1,290,623	+				-1.3
1,290,624	-				+0.1
1,290,658	-				-1.1
1,290,684	-				-2.8
1,290,718	+				-2.1
1,290,719	-				-0.5
1,290,754	-				+0.4
1,290,754	-				-1.1
1,290,814	+				-0.4
1,290,814	+				-0.5
1,290,815	-				-1.6
1,290,815	-				-0.3
1,290,816	+				-0.6
1,290,816	+				+0.5
1,290,839	+				-0.7
1,290,839	+				-1.0
1,290,839	+				+0.6
1,290,839	+				-1.0
1,290,840	-				-2.0
1,290,919	+		DDA3937_RS05775	0.14	-0.5
1,290,920	-		DDA3937_RS05775	0.14	-2.2
1,291,140	+		DDA3937_RS05775	0.54	+0.7
1,291,141	-		DDA3937_RS05775	0.54	-0.6
1,291,141	-		DDA3937_RS05775	0.54	-0.1