Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS05425

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,211,389	+		DDA3937_RS05420	0.50	+0.4
1,211,391	+		DDA3937_RS05420	0.50	-0.9
1,211,391	+		DDA3937_RS05420	0.50	+0.5
1,211,391	+		DDA3937_RS05420	0.50	+1.3
1,211,391	+		DDA3937_RS05420	0.50	+0.7
1,211,391	+		DDA3937_RS05420	0.50	-0.2
1,211,391	+		DDA3937_RS05420	0.50	-1.8
1,211,391	+		DDA3937_RS05420	0.50	-0.2
1,211,392	-		DDA3937_RS05420	0.50	-0.8
1,211,392	-		DDA3937_RS05420	0.50	-0.7
1,211,392	-		DDA3937_RS05420	0.50	-0.7
1,211,392	-		DDA3937_RS05420	0.50	+0.2
1,211,392	-		DDA3937_RS05420	0.50	+0.1
1,211,392	-		DDA3937_RS05420	0.50	+0.0
1,211,392	-		DDA3937_RS05420	0.50	+0.0
1,211,392	-		DDA3937_RS05420	0.50	-0.6
1,211,392	-		DDA3937_RS05420	0.50	-2.6
1,211,392	-		DDA3937_RS05420	0.50	-0.7
1,211,395	+		DDA3937_RS05420	0.50	+0.0
1,211,395	+		DDA3937_RS05420	0.50	+2.8
1,211,395	+		DDA3937_RS05420	0.50	-0.5
1,211,395	+		DDA3937_RS05420	0.50	-2.1
1,211,396	-		DDA3937_RS05420	0.50	-0.2
1,211,514	+		DDA3937_RS05420	0.60	-1.0
1,211,515	-		DDA3937_RS05420	0.60	+0.1
1,211,515	-		DDA3937_RS05420	0.60	+1.2
1,211,820	+		DDA3937_RS05420	0.85	+0.1
1,211,821	-		DDA3937_RS05420	0.85	-1.1
1,211,836	-		DDA3937_RS05420	0.86	+0.0
1,211,874	-		DDA3937_RS05420	0.89	-0.2
1,211,876	+		DDA3937_RS05420	0.89	+1.1
1,211,876	+		DDA3937_RS05420	0.89	-0.7
1,211,876	+		DDA3937_RS05420	0.89	-0.6
1,211,876	+		DDA3937_RS05420	0.89	+0.8
1,211,876	+		DDA3937_RS05420	0.89	+1.4
1,211,876	+		DDA3937_RS05420	0.89	-0.8
1,211,877	-		DDA3937_RS05420	0.89	+0.3
1,211,877	-		DDA3937_RS05420	0.89	-0.6
1,211,877	-		DDA3937_RS05420	0.89	+0.0
1,211,879	+		DDA3937_RS05420	0.90	-0.1
1,211,879	+		DDA3937_RS05420	0.90	+0.6
1,211,879	+		DDA3937_RS05420	0.90	-0.6
1,211,879	+		DDA3937_RS05420	0.90	+2.9
1,211,880	-		DDA3937_RS05420	0.90	+0.7
1,211,880	-				+1.3
1,211,880	-		DDA3937_RS05420	0.90	-0.8
1,211,880	-		DDA3937_RS05420	0.90	-1.1
1,211,880	-		DDA3937_RS05420	0.90	-0.4
1,211,959	+				-0.4
1,211,961	+				+1.9
1,211,961	+				+1.1
1,211,961	+				-0.4
1,211,961	+				+0.8
1,211,961	+				+0.7
1,211,968	-				-0.3
1,211,992	+				-0.7
1,211,992	+				+0.9
1,211,992	+				-0.4
1,211,993	-				-1.0
1,211,993	-				-0.7
1,211,993	-				+0.2
1,211,993	-				+0.3
1,211,993	-				-0.4
1,211,998	+				-0.3
1,211,998	+				+0.1
1,212,052	+				-1.4
1,212,052	+				-0.1
1,212,052	+				+0.7
1,212,052	+				-0.2
1,212,052	+				+1.7
1,212,052	+				-1.0
1,212,052	+				-0.2
1,212,052	+				+0.9
1,212,053	-				-0.6
1,212,053	-				-1.9
1,212,053	-				-0.2
1,212,053	-				+0.9
1,212,054	+				-0.0
1,212,054	+				-0.9
1,212,054	+				+0.9
1,212,055	-				+0.2
1,212,055	-				-1.7
1,212,055	-				-0.3
1,212,055	-				-0.5
1,212,055	-				+0.6
1,212,055	-				-1.0
1,212,055	-				-0.4
1,212,086	+				+0.9
1,212,101	+				+0.7
1,212,101	+				-0.2
1,212,101	+				-0.1
1,212,101	+				-1.5
1,212,101	+				+0.2
1,212,101	+				+1.2
1,212,101	+				+0.2
1,212,101	+				+0.3
1,212,101	+				-1.2
1,212,102	-				-2.1
1,212,102	-				-0.6
1,212,140	+				-0.7
1,212,140	+				+0.4
1,212,142	+				+0.8
1,212,143	-				-1.5
1,212,143	-				-0.7
1,212,143	-				+0.8
1,212,143	-				-0.8
1,212,143	-				-0.1
1,212,155	+				-0.8
1,212,156	-				-0.2
1,212,170	-				-1.2
1,212,172	+				+1.1
1,212,172	+				+0.7
1,212,173	-				-0.7
1,212,173	-				-1.0
1,212,173	-				-0.3
1,212,173	-				-2.0
1,212,178	+				+1.3
1,212,179	-				+0.8
1,212,226	+				-1.2
1,212,226	+				-0.4
1,212,226	+				-0.2
1,212,226	+				+0.3
1,212,226	+				+0.6
1,212,226	+				+0.8
1,212,226	+				-0.5
1,212,227	-				-1.1
1,212,227	-				-1.9
1,212,227	-				+2.8
1,212,227	-				+1.8
1,212,227	-				-0.1
1,212,230	-				+0.1
1,212,230	-				+0.6
1,212,230	-				-0.7
1,212,336	-				-1.5
1,212,336	-				-1.7
1,212,336	-				+0.8
1,212,392	+				-0.5
1,212,392	+				+0.1
1,212,392	+				-0.3
1,212,483	+		DDA3937_RS05425	0.15	+0.6
1,212,517	-		DDA3937_RS05425	0.20	+1.3
1,212,684	+		DDA3937_RS05425	0.44	-2.2
1,212,684	+		DDA3937_RS05425	0.44	+1.5
1,212,684	+		DDA3937_RS05425	0.44	+2.3
1,212,685	-		DDA3937_RS05425	0.44	-0.7
1,212,838	+		DDA3937_RS05425	0.66	+0.3
1,212,865	+		DDA3937_RS05425	0.70	-0.6
1,212,865	+		DDA3937_RS05425	0.70	+0.0
1,212,865	+		DDA3937_RS05425	0.70	-0.2
1,212,865	+		DDA3937_RS05425	0.70	+1.7
1,212,865	+		DDA3937_RS05425	0.70	+0.3
1,212,865	+		DDA3937_RS05425	0.70	+3.4
1,212,866	-		DDA3937_RS05425	0.70	-0.8
1,212,866	-		DDA3937_RS05425	0.70	-1.4
1,212,878	+		DDA3937_RS05425	0.72	-0.4
1,212,878	+		DDA3937_RS05425	0.72	-2.0
1,212,898	+		DDA3937_RS05425	0.75	-0.9
1,212,898	+		DDA3937_RS05425	0.75	-0.7
1,212,898	+		DDA3937_RS05425	0.75	-1.6
1,212,898	+		DDA3937_RS05425	0.75	-0.2
1,212,898	+		DDA3937_RS05425	0.75	-1.1
1,212,899	-		DDA3937_RS05425	0.75	-0.1
1,212,899	-		DDA3937_RS05425	0.75	-1.3
1,212,899	-		DDA3937_RS05425	0.75	-1.0
1,212,899	-		DDA3937_RS05425	0.75	+1.1
1,212,900	+		DDA3937_RS05425	0.75	+0.2
1,212,900	+		DDA3937_RS05425	0.75	-1.0
1,212,900	+		DDA3937_RS05425	0.75	-1.0
1,212,900	+		DDA3937_RS05425	0.75	-1.7
1,212,900	+		DDA3937_RS05425	0.75	+1.2
1,212,900	+		DDA3937_RS05425	0.75	-0.2
1,212,900	+		DDA3937_RS05425	0.75	-1.0
1,212,900	+		DDA3937_RS05425	0.75	-0.3
1,212,900	+		DDA3937_RS05425	0.75	-0.4
1,212,900	+		DDA3937_RS05425	0.75	-0.8
1,212,900	+		DDA3937_RS05425	0.75	-0.4
1,212,900	+		DDA3937_RS05425	0.75	+0.2
1,212,901	-		DDA3937_RS05425	0.75	-1.4
1,212,901	-		DDA3937_RS05425	0.75	+0.6
1,212,901	-		DDA3937_RS05425	0.75	+1.2
1,212,901	-		DDA3937_RS05425	0.75	-0.1
1,212,901	-		DDA3937_RS05425	0.75	+2.1
1,212,901	-		DDA3937_RS05425	0.75	+0.5
1,212,901	-		DDA3937_RS05425	0.75	-0.3
1,212,901	-		DDA3937_RS05425	0.75	-1.1
1,212,901	-		DDA3937_RS05425	0.75	-0.5
1,212,901	-		DDA3937_RS05425	0.75	-2.0
1,212,901	-		DDA3937_RS05425	0.75	+1.6
1,212,901	-		DDA3937_RS05425	0.75	+0.1
1,212,901	-		DDA3937_RS05425	0.75	-1.0
1,212,901	-		DDA3937_RS05425	0.75	-1.7
1,212,902	+		DDA3937_RS05425	0.76	-0.1
1,212,902	+		DDA3937_RS05425	0.76	+0.2
1,212,902	+		DDA3937_RS05425	0.76	-1.4
1,212,902	+		DDA3937_RS05425	0.76	-0.2
1,212,902	+		DDA3937_RS05425	0.76	+0.7
1,212,903	+		DDA3937_RS05425	0.76	-0.2
1,212,903	-		DDA3937_RS05425	0.76	-0.0
1,212,903	-		DDA3937_RS05425	0.76	-1.1
1,212,903	-		DDA3937_RS05425	0.76	-0.1
1,212,903	-		DDA3937_RS05425	0.76	+1.6
1,212,903	-		DDA3937_RS05425	0.76	-2.7
1,212,903	-		DDA3937_RS05425	0.76	-0.8
1,212,903	-		DDA3937_RS05425	0.76	-1.7
1,212,928	+		DDA3937_RS05425	0.79	-0.2
1,212,928	+		DDA3937_RS05425	0.79	+1.0
1,212,928	+		DDA3937_RS05425	0.79	-0.7
1,212,929	-		DDA3937_RS05425	0.79	+1.1
1,212,929	-		DDA3937_RS05425	0.79	+1.0
1,212,929	-		DDA3937_RS05425	0.79	-2.2
1,212,945	+		DDA3937_RS05425	0.82	-0.2
1,212,945	+		DDA3937_RS05425	0.82	+1.3
1,212,945	+		DDA3937_RS05425	0.82	+1.5
1,212,945	+		DDA3937_RS05425	0.82	+0.9
1,212,945	+		DDA3937_RS05425	0.82	-1.8
1,212,974	+		DDA3937_RS05425	0.86	-0.5
1,213,065	+				+0.2
1,213,066	-				-0.1
1,213,102	+				-0.8
1,213,102	+				-0.6
1,213,102	+				-0.1
1,213,102	+				-0.7
1,213,102	+				-0.4
1,213,102	+				-0.4
1,213,102	+				-0.0
1,213,102	+				+4.8
1,213,103	-				-3.2
1,213,103	-				+0.1
1,213,103	-				-0.3
1,213,103	-				-0.2
1,213,185	+				-1.2
1,213,240	-		DDA3937_RS05430	0.11	-1.0
1,213,240	-		DDA3937_RS05430	0.11	-1.6
1,213,240	-				+0.3
1,213,326	+		DDA3937_RS05430	0.17	-0.7
1,213,336	-		DDA3937_RS05430	0.18	-1.2
1,213,467	-		DDA3937_RS05430	0.28	-0.3
1,213,560	+		DDA3937_RS05430	0.35	-1.7
1,213,560	+		DDA3937_RS05430	0.35	+0.7
1,213,560	+		DDA3937_RS05430	0.35	+0.4
1,213,561	-		DDA3937_RS05430	0.35	+0.6
1,213,561	-		DDA3937_RS05430	0.35	+0.9
1,213,622	-		DDA3937_RS05430	0.40	-0.8
1,213,641	+		DDA3937_RS05430	0.41	-1.8
1,213,642	-		DDA3937_RS05430	0.41	+1.1
1,213,642	-		DDA3937_RS05430	0.41	+0.5
1,213,770	+		DDA3937_RS05430	0.51	+1.3