Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS04275 and DDA3937_RS04280 overlap by 1 nucleotides DDA3937_RS04280 and DDA3937_RS04285 overlap by 4 nucleotides DDA3937_RS04285 and DDA3937_RS04290 overlap by 29 nucleotides DDA3937_RS04290 and DDA3937_RS04295 are separated by 3 nucleotides
DDA3937_RS04275: DDA3937_RS04275 - phage tail protein, at 941,148 to 942,569
_RS04275
DDA3937_RS04280: DDA3937_RS04280 - tail fiber assembly protein, at 942,569 to 943,189
_RS04280
DDA3937_RS04285: DDA3937_RS04285 - hypothetical protein, at 943,186 to 943,911
_RS04285
DDA3937_RS04290: DDA3937_RS04290 - hypothetical protein, at 943,883 to 944,410
_RS04290
DDA3937_RS04295: DDA3937_RS04295 - hypothetical protein, at 944,414 to 946,066
_RS04295
Position (kb) 943
944 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 942.206 kb on + strand, within DDA3937_RS04275 at 942.234 kb on + strand, within DDA3937_RS04275 at 942.234 kb on + strand, within DDA3937_RS04275 at 942.234 kb on + strand, within DDA3937_RS04275 at 942.234 kb on + strand, within DDA3937_RS04275 at 942.235 kb on - strand, within DDA3937_RS04275 at 942.235 kb on - strand, within DDA3937_RS04275 at 942.235 kb on - strand, within DDA3937_RS04275 at 942.235 kb on - strand, within DDA3937_RS04275 at 942.242 kb on - strand, within DDA3937_RS04275 at 942.244 kb on + strand, within DDA3937_RS04275 at 942.244 kb on + strand, within DDA3937_RS04275 at 942.244 kb on + strand at 942.245 kb on - strand, within DDA3937_RS04275 at 942.271 kb on + strand, within DDA3937_RS04275 at 942.340 kb on + strand, within DDA3937_RS04275 at 942.362 kb on + strand, within DDA3937_RS04275 at 942.374 kb on + strand, within DDA3937_RS04275 at 942.375 kb on - strand at 942.395 kb on - strand, within DDA3937_RS04275 at 942.395 kb on - strand, within DDA3937_RS04275 at 942.402 kb on - strand, within DDA3937_RS04275 at 942.451 kb on - strand at 942.451 kb on - strand at 942.451 kb on - strand at 942.452 kb on + strand at 942.452 kb on + strand at 942.452 kb on + strand at 942.452 kb on + strand at 942.452 kb on + strand at 942.452 kb on + strand at 942.452 kb on + strand at 942.453 kb on - strand at 942.453 kb on - strand at 942.453 kb on - strand at 942.453 kb on - strand at 942.453 kb on - strand at 942.453 kb on - strand at 942.458 kb on + strand at 942.470 kb on - strand at 942.470 kb on - strand at 942.470 kb on - strand at 942.474 kb on + strand at 942.475 kb on - strand at 942.516 kb on - strand at 942.516 kb on - strand at 942.545 kb on + strand at 942.545 kb on + strand at 942.545 kb on + strand at 942.546 kb on - strand at 942.549 kb on + strand at 942.549 kb on + strand at 942.549 kb on + strand at 942.550 kb on - strand at 942.550 kb on - strand at 942.550 kb on - strand at 942.553 kb on + strand at 942.553 kb on + strand at 942.553 kb on + strand at 942.553 kb on + strand at 942.554 kb on - strand at 942.554 kb on - strand at 942.554 kb on - strand at 942.554 kb on - strand at 942.554 kb on - strand at 942.554 kb on - strand at 942.568 kb on - strand at 942.577 kb on + strand at 942.578 kb on - strand at 942.578 kb on - strand at 942.650 kb on + strand, within DDA3937_RS04280 at 942.651 kb on - strand, within DDA3937_RS04280 at 942.651 kb on - strand, within DDA3937_RS04280 at 942.677 kb on + strand, within DDA3937_RS04280 at 942.677 kb on + strand, within DDA3937_RS04280 at 942.677 kb on + strand, within DDA3937_RS04280 at 942.678 kb on - strand, within DDA3937_RS04280 at 942.698 kb on + strand, within DDA3937_RS04280 at 942.698 kb on + strand, within DDA3937_RS04280 at 942.698 kb on + strand at 942.698 kb on + strand, within DDA3937_RS04280 at 942.698 kb on + strand, within DDA3937_RS04280 at 942.699 kb on - strand, within DDA3937_RS04280 at 942.699 kb on - strand, within DDA3937_RS04280 at 942.699 kb on - strand, within DDA3937_RS04280 at 942.719 kb on - strand, within DDA3937_RS04280 at 942.734 kb on + strand, within DDA3937_RS04280 at 942.735 kb on - strand, within DDA3937_RS04280 at 942.735 kb on - strand, within DDA3937_RS04280 at 942.806 kb on + strand, within DDA3937_RS04280 at 942.806 kb on + strand, within DDA3937_RS04280 at 942.807 kb on - strand, within DDA3937_RS04280 at 942.863 kb on - strand, within DDA3937_RS04280 at 942.876 kb on + strand, within DDA3937_RS04280 at 942.985 kb on + strand, within DDA3937_RS04280 at 942.985 kb on + strand, within DDA3937_RS04280 at 943.047 kb on + strand, within DDA3937_RS04280 at 943.047 kb on + strand, within DDA3937_RS04280 at 943.047 kb on + strand, within DDA3937_RS04280 at 943.048 kb on - strand, within DDA3937_RS04280 at 943.048 kb on - strand, within DDA3937_RS04280 at 943.048 kb on - strand, within DDA3937_RS04280 at 943.048 kb on - strand, within DDA3937_RS04280 at 943.048 kb on - strand, within DDA3937_RS04280 at 943.048 kb on - strand, within DDA3937_RS04280 at 943.090 kb on - strand, within DDA3937_RS04280 at 943.122 kb on + strand, within DDA3937_RS04280 at 943.138 kb on - strand at 943.138 kb on - strand at 943.138 kb on - strand at 943.143 kb on + strand at 943.143 kb on + strand at 943.143 kb on + strand at 943.143 kb on + strand at 943.144 kb on - strand at 943.144 kb on - strand at 943.206 kb on + strand at 943.206 kb on + strand at 943.207 kb on - strand at 943.270 kb on + strand, within DDA3937_RS04285 at 943.270 kb on + strand, within DDA3937_RS04285 at 943.271 kb on - strand, within DDA3937_RS04285 at 943.303 kb on + strand, within DDA3937_RS04285 at 943.303 kb on + strand, within DDA3937_RS04285 at 943.303 kb on + strand, within DDA3937_RS04285 at 943.304 kb on - strand, within DDA3937_RS04285 at 943.304 kb on - strand, within DDA3937_RS04285 at 943.308 kb on - strand, within DDA3937_RS04285 at 943.330 kb on + strand, within DDA3937_RS04285 at 943.330 kb on + strand, within DDA3937_RS04285 at 943.330 kb on + strand, within DDA3937_RS04285 at 943.331 kb on - strand, within DDA3937_RS04285 at 943.346 kb on + strand, within DDA3937_RS04285 at 943.347 kb on - strand, within DDA3937_RS04285 at 943.347 kb on - strand, within DDA3937_RS04285 at 943.415 kb on + strand, within DDA3937_RS04285 at 943.599 kb on + strand, within DDA3937_RS04285 at 943.600 kb on - strand, within DDA3937_RS04285 at 943.803 kb on + strand, within DDA3937_RS04285 at 943.825 kb on + strand, within DDA3937_RS04285 at 943.825 kb on + strand, within DDA3937_RS04285 at 943.826 kb on - strand, within DDA3937_RS04285 at 943.826 kb on - strand, within DDA3937_RS04285 at 943.828 kb on - strand, within DDA3937_RS04285 at 943.828 kb on - strand, within DDA3937_RS04285 at 943.845 kb on + strand at 943.893 kb on + strand at 943.893 kb on + strand at 943.894 kb on - strand at 943.894 kb on - strand at 943.898 kb on - strand at 943.898 kb on - strand at 943.922 kb on - strand at 944.116 kb on + strand, within DDA3937_RS04290 at 944.116 kb on + strand, within DDA3937_RS04290 at 944.116 kb on + strand, within DDA3937_RS04290 at 944.117 kb on - strand, within DDA3937_RS04290 at 944.239 kb on + strand, within DDA3937_RS04290 at 944.240 kb on - strand, within DDA3937_RS04290 at 944.240 kb on - strand, within DDA3937_RS04290 at 944.254 kb on + strand, within DDA3937_RS04290 at 944.254 kb on + strand, within DDA3937_RS04290 at 944.255 kb on - strand, within DDA3937_RS04290 at 944.255 kb on - strand, within DDA3937_RS04290 at 944.454 kb on + strand at 944.454 kb on + strand at 944.455 kb on - strand at 944.455 kb on - strand at 944.455 kb on - strand at 944.455 kb on - strand at 944.455 kb on - strand at 944.455 kb on - strand at 944.455 kb on - strand at 944.463 kb on + strand at 944.463 kb on + strand at 944.464 kb on - strand at 944.464 kb on - strand at 944.474 kb on - strand at 944.479 kb on - strand at 944.509 kb on + strand at 944.534 kb on + strand at 944.534 kb on + strand at 944.534 kb on + strand at 944.534 kb on + strand at 944.535 kb on - strand at 944.535 kb on - strand at 944.535 kb on - strand at 944.535 kb on - strand at 944.567 kb on + strand at 944.568 kb on - strand at 944.570 kb on - strand at 944.788 kb on + strand, within DDA3937_RS04295 at 944.789 kb on - strand, within DDA3937_RS04295 at 944.801 kb on - strand, within DDA3937_RS04295 at 944.801 kb on - strand, within DDA3937_RS04295 at 944.806 kb on + strand, within DDA3937_RS04295 at 944.807 kb on - strand, within DDA3937_RS04295 at 944.807 kb on - strand, within DDA3937_RS04295 at 944.807 kb on - strand, within DDA3937_RS04295 at 944.864 kb on + strand, within DDA3937_RS04295 at 944.864 kb on + strand, within DDA3937_RS04295 at 944.864 kb on + strand, within DDA3937_RS04295 at 944.864 kb on + strand, within DDA3937_RS04295 at 944.864 kb on + strand, within DDA3937_RS04295 at 944.864 kb on + strand, within DDA3937_RS04295 at 944.865 kb on - strand, within DDA3937_RS04295 at 944.865 kb on - strand, within DDA3937_RS04295 at 944.865 kb on - strand, within DDA3937_RS04295 at 944.865 kb on - strand, within DDA3937_RS04295 at 944.897 kb on + strand, within DDA3937_RS04295 at 944.905 kb on + strand, within DDA3937_RS04295 at 944.905 kb on + strand, within DDA3937_RS04295 at 944.906 kb on - strand, within DDA3937_RS04295 at 944.906 kb on - strand, within DDA3937_RS04295
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 942,206 + DDA3937_RS04275 0.74 +1.4 942,234 + DDA3937_RS04275 0.76 +0.7 942,234 + DDA3937_RS04275 0.76 +0.3 942,234 + DDA3937_RS04275 0.76 +0.4 942,234 + DDA3937_RS04275 0.76 +0.3 942,235 - DDA3937_RS04275 0.76 +0.3 942,235 - DDA3937_RS04275 0.76 -1.9 942,235 - DDA3937_RS04275 0.76 -2.2 942,235 - DDA3937_RS04275 0.76 -0.6 942,242 - DDA3937_RS04275 0.77 -0.2 942,244 + DDA3937_RS04275 0.77 -0.2 942,244 + DDA3937_RS04275 0.77 +0.2 942,244 + +4.7 942,245 - DDA3937_RS04275 0.77 +0.4 942,271 + DDA3937_RS04275 0.79 -0.2 942,340 + DDA3937_RS04275 0.84 -0.2 942,362 + DDA3937_RS04275 0.85 -0.4 942,374 + DDA3937_RS04275 0.86 -0.8 942,375 - -0.6 942,395 - DDA3937_RS04275 0.88 -0.7 942,395 - DDA3937_RS04275 0.88 -2.0 942,402 - DDA3937_RS04275 0.88 +0.3 942,451 - -0.7 942,451 - -0.2 942,451 - -0.1 942,452 + +2.2 942,452 + +0.0 942,452 + -0.4 942,452 + -0.4 942,452 + -0.6 942,452 + -0.6 942,452 + -1.3 942,453 - +1.3 942,453 - -1.0 942,453 - -0.4 942,453 - -1.3 942,453 - +0.3 942,453 - +0.2 942,458 + -1.3 942,470 - -1.9 942,470 - +1.6 942,470 - +0.5 942,474 + +1.3 942,475 - -0.3 942,516 - +2.4 942,516 - -0.6 942,545 + -0.6 942,545 + -1.2 942,545 + +0.1 942,546 - -0.8 942,549 + -0.2 942,549 + +0.2 942,549 + -0.9 942,550 - -0.2 942,550 - +0.1 942,550 - -0.8 942,553 + -2.1 942,553 + -0.2 942,553 + -0.5 942,553 + -0.5 942,554 - +0.3 942,554 - +0.4 942,554 - -0.1 942,554 - -0.6 942,554 - -2.3 942,554 - -0.4 942,568 - -0.6 942,577 + +0.4 942,578 - +2.4 942,578 - -1.4 942,650 + DDA3937_RS04280 0.13 -0.2 942,651 - DDA3937_RS04280 0.13 -1.2 942,651 - DDA3937_RS04280 0.13 -0.6 942,677 + DDA3937_RS04280 0.17 +0.1 942,677 + DDA3937_RS04280 0.17 -1.0 942,677 + DDA3937_RS04280 0.17 +0.0 942,678 - DDA3937_RS04280 0.18 +0.3 942,698 + DDA3937_RS04280 0.21 -1.4 942,698 + DDA3937_RS04280 0.21 +0.4 942,698 + +1.4 942,698 + DDA3937_RS04280 0.21 -0.7 942,698 + DDA3937_RS04280 0.21 +0.4 942,699 - DDA3937_RS04280 0.21 +0.6 942,699 - DDA3937_RS04280 0.21 -0.9 942,699 - DDA3937_RS04280 0.21 +0.1 942,719 - DDA3937_RS04280 0.24 -0.1 942,734 + DDA3937_RS04280 0.27 -1.2 942,735 - DDA3937_RS04280 0.27 -0.3 942,735 - DDA3937_RS04280 0.27 -2.2 942,806 + DDA3937_RS04280 0.38 -0.9 942,806 + DDA3937_RS04280 0.38 +0.1 942,807 - DDA3937_RS04280 0.38 +0.1 942,863 - DDA3937_RS04280 0.47 -0.6 942,876 + DDA3937_RS04280 0.49 +0.1 942,985 + DDA3937_RS04280 0.67 +0.0 942,985 + DDA3937_RS04280 0.67 -0.3 943,047 + DDA3937_RS04280 0.77 -1.5 943,047 + DDA3937_RS04280 0.77 -0.9 943,047 + DDA3937_RS04280 0.77 +2.3 943,048 - DDA3937_RS04280 0.77 +0.8 943,048 - DDA3937_RS04280 0.77 +0.2 943,048 - DDA3937_RS04280 0.77 -1.2 943,048 - DDA3937_RS04280 0.77 -0.9 943,048 - DDA3937_RS04280 0.77 -1.2 943,048 - DDA3937_RS04280 0.77 -1.4 943,090 - DDA3937_RS04280 0.84 -0.3 943,122 + DDA3937_RS04280 0.89 +0.6 943,138 - -0.1 943,138 - -0.8 943,138 - -2.0 943,143 + -0.1 943,143 + -0.2 943,143 + -0.3 943,143 + -1.0 943,144 - +0.8 943,144 - +1.1 943,206 + -0.5 943,206 + +1.0 943,207 - -0.9 943,270 + DDA3937_RS04285 0.12 -0.2 943,270 + DDA3937_RS04285 0.12 +0.2 943,271 - DDA3937_RS04285 0.12 +0.4 943,303 + DDA3937_RS04285 0.16 +0.2 943,303 + DDA3937_RS04285 0.16 -0.6 943,303 + DDA3937_RS04285 0.16 -2.1 943,304 - DDA3937_RS04285 0.16 +0.7 943,304 - DDA3937_RS04285 0.16 +1.0 943,308 - DDA3937_RS04285 0.17 -0.4 943,330 + DDA3937_RS04285 0.20 -0.1 943,330 + DDA3937_RS04285 0.20 +4.3 943,330 + DDA3937_RS04285 0.20 -0.8 943,331 - DDA3937_RS04285 0.20 -0.7 943,346 + DDA3937_RS04285 0.22 -1.0 943,347 - DDA3937_RS04285 0.22 +1.8 943,347 - DDA3937_RS04285 0.22 -0.7 943,415 + DDA3937_RS04285 0.32 -0.1 943,599 + DDA3937_RS04285 0.57 -0.2 943,600 - DDA3937_RS04285 0.57 -2.3 943,803 + DDA3937_RS04285 0.85 +3.3 943,825 + DDA3937_RS04285 0.88 -0.2 943,825 + DDA3937_RS04285 0.88 -0.4 943,826 - DDA3937_RS04285 0.88 +1.4 943,826 - DDA3937_RS04285 0.88 +1.1 943,828 - DDA3937_RS04285 0.88 +0.8 943,828 - DDA3937_RS04285 0.88 -2.5 943,845 + -1.1 943,893 + -1.4 943,893 + -1.6 943,894 - +0.2 943,894 - -0.6 943,898 - -0.7 943,898 - +0.4 943,922 - +0.1 944,116 + DDA3937_RS04290 0.44 +0.5 944,116 + DDA3937_RS04290 0.44 -2.3 944,116 + DDA3937_RS04290 0.44 -0.5 944,117 - DDA3937_RS04290 0.44 -0.5 944,239 + DDA3937_RS04290 0.67 -0.4 944,240 - DDA3937_RS04290 0.68 -0.6 944,240 - DDA3937_RS04290 0.68 -0.3 944,254 + DDA3937_RS04290 0.70 +0.1 944,254 + DDA3937_RS04290 0.70 -0.4 944,255 - DDA3937_RS04290 0.70 +1.2 944,255 - DDA3937_RS04290 0.70 -0.7 944,454 + +0.4 944,454 + -0.0 944,455 - +0.4 944,455 - +1.7 944,455 - -0.9 944,455 - -0.2 944,455 - +1.2 944,455 - -1.6 944,455 - +3.2 944,463 + -0.3 944,463 + +0.3 944,464 - +0.8 944,464 - +0.1 944,474 - +0.3 944,479 - -0.2 944,509 + -0.1 944,534 + -0.2 944,534 + -0.7 944,534 + -1.8 944,534 + -0.2 944,535 - -1.1 944,535 - -1.4 944,535 - +0.3 944,535 - -1.4 944,567 + -0.9 944,568 - -0.9 944,570 - -0.5 944,788 + DDA3937_RS04295 0.23 +0.2 944,789 - DDA3937_RS04295 0.23 -0.0 944,801 - DDA3937_RS04295 0.23 -0.5 944,801 - DDA3937_RS04295 0.23 -0.7 944,806 + DDA3937_RS04295 0.24 +0.5 944,807 - DDA3937_RS04295 0.24 +0.6 944,807 - DDA3937_RS04295 0.24 +0.4 944,807 - DDA3937_RS04295 0.24 -0.2 944,864 + DDA3937_RS04295 0.27 -0.9 944,864 + DDA3937_RS04295 0.27 +1.1 944,864 + DDA3937_RS04295 0.27 -0.2 944,864 + DDA3937_RS04295 0.27 +3.6 944,864 + DDA3937_RS04295 0.27 +0.9 944,864 + DDA3937_RS04295 0.27 +1.4 944,865 - DDA3937_RS04295 0.27 -1.5 944,865 - DDA3937_RS04295 0.27 -1.2 944,865 - DDA3937_RS04295 0.27 -1.2 944,865 - DDA3937_RS04295 0.27 -1.8 944,897 + DDA3937_RS04295 0.29 -0.5 944,905 + DDA3937_RS04295 0.30 -0.3 944,905 + DDA3937_RS04295 0.30 +1.7 944,906 - DDA3937_RS04295 0.30 -0.6 944,906 - DDA3937_RS04295 0.30 -1.1
Or see this region's nucleotide sequence