Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS04110 and DDA3937_RS04115 are separated by 840 nucleotides DDA3937_RS04115 and DDA3937_RS04120 are separated by 107 nucleotides DDA3937_RS04120 and DDA3937_RS04125 overlap by 23 nucleotides
DDA3937_RS04110: DDA3937_RS04110 - Hcp family type VI secretion system effector, at 914,093 to 914,611
_RS04110
DDA3937_RS04115: DDA3937_RS04115 - site-specific integrase, at 915,452 to 916,543
_RS04115
DDA3937_RS04120: DDA3937_RS04120 - ASCH domain-containing protein, at 916,651 to 917,022
_RS04120
DDA3937_RS04125: DDA3937_RS04125 - acetyltransferase, at 917,000 to 918,073
_RS04125
Position (kb) 915
916
917 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 914.595 kb on + strand at 914.595 kb on + strand at 914.611 kb on + strand at 914.611 kb on + strand at 914.639 kb on - strand at 914.726 kb on + strand at 914.796 kb on + strand at 914.864 kb on + strand at 914.864 kb on + strand at 914.864 kb on + strand at 914.867 kb on + strand at 914.868 kb on - strand at 915.033 kb on - strand at 915.068 kb on + strand at 915.102 kb on + strand at 915.102 kb on + strand at 915.102 kb on + strand at 915.102 kb on + strand at 915.103 kb on - strand at 915.103 kb on - strand at 915.141 kb on + strand at 915.141 kb on + strand at 915.141 kb on + strand at 915.141 kb on + strand at 915.141 kb on + strand at 915.141 kb on + strand at 915.141 kb on + strand at 915.142 kb on - strand at 915.142 kb on - strand at 915.142 kb on - strand at 915.146 kb on - strand at 915.151 kb on + strand at 915.152 kb on - strand at 915.154 kb on + strand at 915.155 kb on - strand at 915.179 kb on - strand at 915.191 kb on + strand at 915.192 kb on - strand at 915.266 kb on + strand at 915.266 kb on + strand at 915.266 kb on + strand at 915.266 kb on + strand at 915.266 kb on + strand at 915.267 kb on - strand at 915.267 kb on - strand at 915.281 kb on - strand at 915.281 kb on - strand at 915.281 kb on - strand at 915.281 kb on - strand at 915.283 kb on - strand at 915.321 kb on + strand at 915.321 kb on + strand at 915.399 kb on + strand at 915.553 kb on + strand at 915.594 kb on + strand, within DDA3937_RS04115 at 915.594 kb on + strand, within DDA3937_RS04115 at 915.594 kb on + strand, within DDA3937_RS04115 at 915.595 kb on - strand, within DDA3937_RS04115 at 915.595 kb on - strand, within DDA3937_RS04115 at 915.647 kb on + strand, within DDA3937_RS04115 at 915.647 kb on + strand, within DDA3937_RS04115 at 915.648 kb on - strand at 915.648 kb on - strand, within DDA3937_RS04115 at 915.648 kb on - strand, within DDA3937_RS04115 at 915.648 kb on - strand, within DDA3937_RS04115 at 915.648 kb on - strand, within DDA3937_RS04115 at 915.648 kb on - strand, within DDA3937_RS04115 at 915.648 kb on - strand, within DDA3937_RS04115 at 915.649 kb on + strand, within DDA3937_RS04115 at 915.649 kb on + strand, within DDA3937_RS04115 at 915.649 kb on + strand, within DDA3937_RS04115 at 915.650 kb on - strand, within DDA3937_RS04115 at 915.650 kb on - strand, within DDA3937_RS04115 at 915.650 kb on - strand, within DDA3937_RS04115 at 915.695 kb on + strand, within DDA3937_RS04115 at 915.695 kb on + strand, within DDA3937_RS04115 at 915.696 kb on - strand, within DDA3937_RS04115 at 915.791 kb on - strand, within DDA3937_RS04115 at 915.791 kb on - strand, within DDA3937_RS04115 at 915.807 kb on + strand, within DDA3937_RS04115 at 915.807 kb on + strand, within DDA3937_RS04115 at 915.808 kb on - strand, within DDA3937_RS04115 at 915.808 kb on - strand, within DDA3937_RS04115 at 915.861 kb on + strand, within DDA3937_RS04115 at 915.861 kb on + strand, within DDA3937_RS04115 at 915.861 kb on + strand, within DDA3937_RS04115 at 915.861 kb on + strand, within DDA3937_RS04115 at 915.862 kb on - strand, within DDA3937_RS04115 at 915.862 kb on - strand, within DDA3937_RS04115 at 915.862 kb on - strand, within DDA3937_RS04115 at 915.896 kb on + strand, within DDA3937_RS04115 at 915.938 kb on + strand, within DDA3937_RS04115 at 915.938 kb on + strand, within DDA3937_RS04115 at 915.938 kb on + strand, within DDA3937_RS04115 at 915.938 kb on + strand, within DDA3937_RS04115 at 915.939 kb on - strand, within DDA3937_RS04115 at 915.939 kb on - strand at 915.939 kb on - strand, within DDA3937_RS04115 at 915.939 kb on - strand, within DDA3937_RS04115 at 915.939 kb on - strand, within DDA3937_RS04115 at 916.001 kb on + strand, within DDA3937_RS04115 at 916.040 kb on + strand, within DDA3937_RS04115 at 916.040 kb on + strand, within DDA3937_RS04115 at 916.040 kb on + strand, within DDA3937_RS04115 at 916.041 kb on - strand, within DDA3937_RS04115 at 916.122 kb on - strand, within DDA3937_RS04115 at 916.283 kb on - strand, within DDA3937_RS04115 at 916.307 kb on - strand, within DDA3937_RS04115 at 916.366 kb on + strand, within DDA3937_RS04115 at 916.453 kb on + strand at 916.498 kb on - strand at 916.531 kb on + strand at 916.531 kb on + strand at 916.532 kb on - strand at 916.543 kb on + strand at 916.543 kb on + strand at 916.543 kb on + strand at 916.544 kb on - strand at 916.544 kb on - strand at 916.544 kb on - strand at 916.544 kb on - strand at 916.556 kb on + strand at 916.557 kb on - strand at 916.557 kb on - strand at 916.571 kb on + strand at 916.571 kb on + strand at 916.571 kb on + strand at 916.571 kb on + strand at 916.571 kb on + strand at 916.571 kb on + strand at 916.571 kb on + strand at 916.572 kb on - strand at 916.572 kb on - strand at 916.572 kb on - strand at 916.575 kb on + strand at 916.575 kb on + strand at 916.575 kb on + strand at 916.576 kb on - strand at 916.576 kb on - strand at 916.576 kb on - strand at 916.576 kb on - strand at 916.602 kb on + strand at 916.602 kb on + strand at 916.602 kb on + strand at 916.602 kb on + strand at 916.602 kb on + strand at 916.602 kb on + strand at 916.602 kb on + strand at 916.602 kb on + strand at 916.602 kb on + strand at 916.602 kb on + strand at 916.602 kb on + strand at 916.602 kb on + strand at 916.603 kb on - strand at 916.603 kb on - strand at 916.603 kb on - strand at 916.603 kb on - strand at 916.603 kb on - strand at 916.603 kb on - strand at 916.652 kb on + strand at 916.652 kb on + strand at 916.653 kb on - strand at 916.653 kb on - strand at 917.015 kb on - strand at 917.208 kb on - strand, within DDA3937_RS04125 at 917.332 kb on - strand, within DDA3937_RS04125 at 917.332 kb on - strand, within DDA3937_RS04125 at 917.397 kb on - strand, within DDA3937_RS04125 at 917.443 kb on - strand, within DDA3937_RS04125 at 917.459 kb on - strand, within DDA3937_RS04125 at 917.459 kb on - strand, within DDA3937_RS04125
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 914,595 + +0.8 914,595 + -2.7 914,611 + +0.3 914,611 + -0.6 914,639 - -0.2 914,726 + -0.5 914,796 + -1.6 914,864 + -0.4 914,864 + -0.1 914,864 + +0.6 914,867 + -0.6 914,868 - -0.2 915,033 - -0.7 915,068 + -2.6 915,102 + -1.0 915,102 + +0.4 915,102 + -0.3 915,102 + +0.4 915,103 - -0.6 915,103 - +0.1 915,141 + +0.4 915,141 + -0.2 915,141 + +0.4 915,141 + -0.2 915,141 + -1.7 915,141 + -0.9 915,141 + -2.7 915,142 - -0.5 915,142 - -2.2 915,142 - -0.1 915,146 - -0.8 915,151 + +0.8 915,152 - -1.0 915,154 + +1.3 915,155 - -1.2 915,179 - -1.1 915,191 + +0.3 915,192 - -0.5 915,266 + +0.8 915,266 + +1.6 915,266 + -0.9 915,266 + +0.4 915,266 + -0.5 915,267 - -0.4 915,267 - -1.5 915,281 - +1.2 915,281 - +1.0 915,281 - -0.2 915,281 - -1.0 915,283 - -0.4 915,321 + +0.6 915,321 + -0.6 915,399 + -0.2 915,553 + -0.6 915,594 + DDA3937_RS04115 0.13 +0.3 915,594 + DDA3937_RS04115 0.13 -0.6 915,594 + DDA3937_RS04115 0.13 -2.0 915,595 - DDA3937_RS04115 0.13 +0.1 915,595 - DDA3937_RS04115 0.13 +0.1 915,647 + DDA3937_RS04115 0.18 -0.2 915,647 + DDA3937_RS04115 0.18 +0.1 915,648 - -1.4 915,648 - DDA3937_RS04115 0.18 +0.9 915,648 - DDA3937_RS04115 0.18 +1.2 915,648 - DDA3937_RS04115 0.18 -1.4 915,648 - DDA3937_RS04115 0.18 -1.5 915,648 - DDA3937_RS04115 0.18 +0.2 915,648 - DDA3937_RS04115 0.18 +0.8 915,649 + DDA3937_RS04115 0.18 +1.7 915,649 + DDA3937_RS04115 0.18 -0.3 915,649 + DDA3937_RS04115 0.18 -1.2 915,650 - DDA3937_RS04115 0.18 +3.5 915,650 - DDA3937_RS04115 0.18 -1.2 915,650 - DDA3937_RS04115 0.18 +0.5 915,695 + DDA3937_RS04115 0.22 +0.6 915,695 + DDA3937_RS04115 0.22 -0.3 915,696 - DDA3937_RS04115 0.22 -0.4 915,791 - DDA3937_RS04115 0.31 -0.8 915,791 - DDA3937_RS04115 0.31 +0.7 915,807 + DDA3937_RS04115 0.33 -0.4 915,807 + DDA3937_RS04115 0.33 -0.4 915,808 - DDA3937_RS04115 0.33 -1.6 915,808 - DDA3937_RS04115 0.33 +0.0 915,861 + DDA3937_RS04115 0.37 +1.8 915,861 + DDA3937_RS04115 0.37 +0.0 915,861 + DDA3937_RS04115 0.37 -0.1 915,861 + DDA3937_RS04115 0.37 -0.2 915,862 - DDA3937_RS04115 0.38 -0.7 915,862 - DDA3937_RS04115 0.38 +0.1 915,862 - DDA3937_RS04115 0.38 -1.5 915,896 + DDA3937_RS04115 0.41 +0.1 915,938 + DDA3937_RS04115 0.45 -0.4 915,938 + DDA3937_RS04115 0.45 -1.5 915,938 + DDA3937_RS04115 0.45 +0.2 915,938 + DDA3937_RS04115 0.45 -0.6 915,939 - DDA3937_RS04115 0.45 +0.8 915,939 - -0.9 915,939 - DDA3937_RS04115 0.45 -1.1 915,939 - DDA3937_RS04115 0.45 -1.1 915,939 - DDA3937_RS04115 0.45 +0.0 916,001 + DDA3937_RS04115 0.50 -1.4 916,040 + DDA3937_RS04115 0.54 +2.0 916,040 + DDA3937_RS04115 0.54 -0.2 916,040 + DDA3937_RS04115 0.54 +0.6 916,041 - DDA3937_RS04115 0.54 +0.6 916,122 - DDA3937_RS04115 0.61 -0.5 916,283 - DDA3937_RS04115 0.76 -1.0 916,307 - DDA3937_RS04115 0.78 +0.6 916,366 + DDA3937_RS04115 0.84 +1.4 916,453 + +0.4 916,498 - -1.2 916,531 + +0.7 916,531 + +1.4 916,532 - -1.7 916,543 + -1.5 916,543 + -1.4 916,543 + -0.6 916,544 - +0.3 916,544 - +1.3 916,544 - -0.3 916,544 - -1.4 916,556 + +0.2 916,557 - -1.1 916,557 - -0.5 916,571 + +0.0 916,571 + -2.5 916,571 + -0.5 916,571 + +2.0 916,571 + -1.7 916,571 + -0.3 916,571 + -2.0 916,572 - -1.3 916,572 - -1.0 916,572 - -0.2 916,575 + -0.2 916,575 + -0.6 916,575 + -2.6 916,576 - +1.2 916,576 - -0.6 916,576 - +1.8 916,576 - -0.7 916,602 + -1.6 916,602 + -0.9 916,602 + -0.6 916,602 + -0.6 916,602 + -1.2 916,602 + +0.5 916,602 + -0.4 916,602 + -0.1 916,602 + +0.0 916,602 + -1.0 916,602 + -0.3 916,602 + -2.0 916,603 - -0.6 916,603 - +0.2 916,603 - -1.0 916,603 - +0.3 916,603 - -2.7 916,603 - -1.6 916,652 + -0.5 916,652 + +0.1 916,653 - -0.9 916,653 - -1.0 917,015 - -0.2 917,208 - DDA3937_RS04125 0.19 -2.3 917,332 - DDA3937_RS04125 0.31 -4.1 917,332 - DDA3937_RS04125 0.31 -0.9 917,397 - DDA3937_RS04125 0.37 -0.7 917,443 - DDA3937_RS04125 0.41 -0.9 917,459 - DDA3937_RS04125 0.43 -2.7 917,459 - DDA3937_RS04125 0.43 -0.9
Or see this region's nucleotide sequence