Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS03800 and DDA3937_RS03805 are separated by 45 nucleotides DDA3937_RS03805 and DDA3937_RS03810 are separated by 43 nucleotides
DDA3937_RS03800: DDA3937_RS03800 - beta-ketoacyl-ACP synthase II, at 840,311 to 841,597
_RS03800
DDA3937_RS03805: DDA3937_RS03805 - oxidoreductase, at 841,643 to 842,449
_RS03805
DDA3937_RS03810: DDA3937_RS03810 - efflux RND transporter permease subunit, at 842,493 to 845,558
_RS03810
Position (kb) 841
842
843 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 840.643 kb on + strand, within DDA3937_RS03800 at 840.643 kb on + strand, within DDA3937_RS03800 at 840.643 kb on + strand, within DDA3937_RS03800 at 840.643 kb on + strand, within DDA3937_RS03800 at 840.643 kb on + strand, within DDA3937_RS03800 at 840.644 kb on - strand, within DDA3937_RS03800 at 840.644 kb on - strand, within DDA3937_RS03800 at 840.644 kb on - strand, within DDA3937_RS03800 at 840.644 kb on - strand, within DDA3937_RS03800 at 840.644 kb on - strand, within DDA3937_RS03800 at 840.757 kb on - strand, within DDA3937_RS03800 at 840.757 kb on - strand, within DDA3937_RS03800 at 840.977 kb on + strand, within DDA3937_RS03800 at 840.977 kb on + strand, within DDA3937_RS03800 at 840.978 kb on - strand, within DDA3937_RS03800 at 840.978 kb on - strand, within DDA3937_RS03800 at 840.978 kb on - strand, within DDA3937_RS03800 at 840.978 kb on - strand, within DDA3937_RS03800 at 841.028 kb on + strand, within DDA3937_RS03800 at 841.051 kb on + strand, within DDA3937_RS03800 at 841.117 kb on + strand, within DDA3937_RS03800 at 841.396 kb on - strand, within DDA3937_RS03800 at 841.471 kb on + strand at 841.472 kb on - strand at 841.475 kb on + strand at 841.476 kb on - strand at 841.487 kb on - strand at 841.517 kb on + strand at 841.517 kb on + strand at 841.518 kb on - strand at 841.573 kb on + strand at 841.574 kb on - strand at 841.574 kb on - strand at 841.574 kb on - strand at 841.574 kb on - strand at 841.574 kb on - strand at 841.574 kb on - strand at 841.574 kb on - strand at 841.577 kb on + strand at 841.577 kb on + strand at 841.577 kb on + strand at 841.577 kb on + strand at 841.577 kb on + strand at 841.577 kb on + strand at 841.577 kb on + strand at 841.578 kb on - strand at 841.578 kb on - strand at 841.578 kb on - strand at 841.578 kb on - strand at 841.578 kb on - strand at 841.578 kb on - strand at 841.578 kb on - strand at 841.578 kb on - strand at 841.578 kb on - strand at 841.578 kb on - strand at 841.578 kb on - strand at 841.578 kb on - strand at 841.578 kb on - strand at 841.579 kb on + strand at 841.579 kb on + strand at 841.579 kb on + strand at 841.579 kb on + strand at 841.579 kb on + strand at 841.579 kb on + strand at 841.579 kb on + strand at 841.579 kb on + strand at 841.580 kb on - strand at 841.580 kb on - strand at 841.603 kb on - strand at 841.603 kb on - strand at 841.624 kb on - strand at 841.696 kb on + strand at 841.696 kb on + strand at 841.696 kb on + strand at 841.697 kb on - strand at 841.711 kb on + strand at 841.711 kb on + strand at 841.711 kb on + strand at 841.712 kb on - strand at 841.712 kb on - strand at 841.712 kb on - strand at 841.712 kb on - strand at 841.712 kb on - strand at 841.715 kb on + strand at 841.741 kb on + strand, within DDA3937_RS03805 at 841.742 kb on - strand, within DDA3937_RS03805 at 841.863 kb on + strand, within DDA3937_RS03805 at 841.864 kb on - strand, within DDA3937_RS03805 at 841.864 kb on - strand, within DDA3937_RS03805 at 841.864 kb on - strand, within DDA3937_RS03805 at 841.864 kb on - strand, within DDA3937_RS03805 at 841.961 kb on + strand, within DDA3937_RS03805 at 841.962 kb on - strand, within DDA3937_RS03805 at 841.962 kb on - strand, within DDA3937_RS03805 at 841.962 kb on - strand, within DDA3937_RS03805 at 842.016 kb on + strand, within DDA3937_RS03805 at 842.016 kb on + strand, within DDA3937_RS03805 at 842.016 kb on + strand, within DDA3937_RS03805 at 842.017 kb on - strand, within DDA3937_RS03805 at 842.017 kb on - strand, within DDA3937_RS03805 at 842.017 kb on - strand, within DDA3937_RS03805 at 842.028 kb on + strand, within DDA3937_RS03805 at 842.029 kb on - strand, within DDA3937_RS03805 at 842.029 kb on - strand, within DDA3937_RS03805 at 842.129 kb on - strand, within DDA3937_RS03805 at 842.219 kb on - strand, within DDA3937_RS03805 at 842.231 kb on - strand, within DDA3937_RS03805 at 842.231 kb on - strand, within DDA3937_RS03805 at 842.231 kb on - strand, within DDA3937_RS03805 at 842.271 kb on - strand, within DDA3937_RS03805 at 842.345 kb on + strand, within DDA3937_RS03805 at 842.391 kb on - strand at 842.402 kb on + strand at 842.402 kb on + strand at 842.403 kb on - strand at 842.429 kb on + strand at 842.449 kb on + strand at 842.449 kb on + strand at 842.450 kb on - strand at 842.475 kb on + strand at 842.476 kb on - strand at 842.476 kb on - strand at 842.533 kb on + strand at 842.533 kb on + strand at 842.533 kb on + strand at 842.533 kb on + strand at 842.533 kb on + strand at 842.533 kb on - strand at 842.534 kb on - strand at 842.534 kb on - strand at 842.534 kb on - strand at 842.534 kb on - strand at 842.534 kb on - strand at 842.534 kb on - strand at 842.534 kb on - strand at 842.534 kb on - strand at 842.596 kb on + strand at 842.596 kb on + strand at 842.597 kb on - strand at 842.597 kb on - strand at 842.790 kb on + strand at 842.791 kb on - strand at 842.791 kb on - strand at 842.909 kb on + strand, within DDA3937_RS03810 at 842.909 kb on + strand, within DDA3937_RS03810 at 842.910 kb on - strand, within DDA3937_RS03810 at 842.910 kb on - strand, within DDA3937_RS03810 at 842.910 kb on - strand, within DDA3937_RS03810 at 842.910 kb on - strand, within DDA3937_RS03810 at 843.128 kb on + strand, within DDA3937_RS03810 at 843.129 kb on - strand, within DDA3937_RS03810 at 843.177 kb on + strand, within DDA3937_RS03810 at 843.177 kb on + strand, within DDA3937_RS03810 at 843.177 kb on + strand, within DDA3937_RS03810 at 843.177 kb on + strand, within DDA3937_RS03810 at 843.177 kb on + strand, within DDA3937_RS03810 at 843.177 kb on + strand, within DDA3937_RS03810 at 843.177 kb on + strand, within DDA3937_RS03810 at 843.177 kb on + strand, within DDA3937_RS03810 at 843.178 kb on - strand, within DDA3937_RS03810 at 843.178 kb on - strand, within DDA3937_RS03810 at 843.178 kb on - strand, within DDA3937_RS03810 at 843.178 kb on - strand, within DDA3937_RS03810 at 843.178 kb on - strand, within DDA3937_RS03810 at 843.178 kb on - strand, within DDA3937_RS03810 at 843.236 kb on + strand, within DDA3937_RS03810 at 843.327 kb on - strand, within DDA3937_RS03810
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 840,643 + DDA3937_RS03800 0.26 -0.3 840,643 + DDA3937_RS03800 0.26 +0.6 840,643 + DDA3937_RS03800 0.26 -0.2 840,643 + DDA3937_RS03800 0.26 -0.5 840,643 + DDA3937_RS03800 0.26 -0.4 840,644 - DDA3937_RS03800 0.26 -1.4 840,644 - DDA3937_RS03800 0.26 -0.4 840,644 - DDA3937_RS03800 0.26 -1.5 840,644 - DDA3937_RS03800 0.26 +0.9 840,644 - DDA3937_RS03800 0.26 -1.5 840,757 - DDA3937_RS03800 0.35 -0.7 840,757 - DDA3937_RS03800 0.35 +0.1 840,977 + DDA3937_RS03800 0.52 -1.0 840,977 + DDA3937_RS03800 0.52 +0.0 840,978 - DDA3937_RS03800 0.52 -0.5 840,978 - DDA3937_RS03800 0.52 +0.1 840,978 - DDA3937_RS03800 0.52 +0.5 840,978 - DDA3937_RS03800 0.52 +0.3 841,028 + DDA3937_RS03800 0.56 -0.3 841,051 + DDA3937_RS03800 0.57 -0.5 841,117 + DDA3937_RS03800 0.63 +2.0 841,396 - DDA3937_RS03800 0.84 -1.7 841,471 + +0.1 841,472 - +0.2 841,475 + -1.7 841,476 - +0.9 841,487 - +0.2 841,517 + -0.2 841,517 + +2.5 841,518 - -1.1 841,573 + +0.1 841,574 - -0.6 841,574 - -0.1 841,574 - -0.5 841,574 - -1.6 841,574 - -0.6 841,574 - +0.0 841,574 - -2.4 841,577 + +0.5 841,577 + -0.2 841,577 + +0.1 841,577 + -0.1 841,577 + +1.1 841,577 + -1.1 841,577 + -0.5 841,578 - +1.0 841,578 - +2.4 841,578 - +0.0 841,578 - -1.1 841,578 - +0.3 841,578 - -1.5 841,578 - -0.8 841,578 - -3.0 841,578 - -1.2 841,578 - -1.0 841,578 - +0.6 841,578 - +0.1 841,578 - -2.5 841,579 + -0.8 841,579 + -0.7 841,579 + -0.5 841,579 + +0.1 841,579 + -0.5 841,579 + +0.5 841,579 + +1.5 841,579 + -0.9 841,580 - -0.5 841,580 - -0.1 841,603 - -0.1 841,603 - +0.9 841,624 - -1.5 841,696 + -0.7 841,696 + +0.8 841,696 + -0.1 841,697 - -0.7 841,711 + +1.5 841,711 + +0.1 841,711 + -1.4 841,712 - -0.5 841,712 - -0.3 841,712 - -0.3 841,712 - -0.8 841,712 - -2.8 841,715 + +0.7 841,741 + DDA3937_RS03805 0.12 -0.3 841,742 - DDA3937_RS03805 0.12 -0.8 841,863 + DDA3937_RS03805 0.27 -1.1 841,864 - DDA3937_RS03805 0.27 -1.1 841,864 - DDA3937_RS03805 0.27 +0.5 841,864 - DDA3937_RS03805 0.27 +1.3 841,864 - DDA3937_RS03805 0.27 +0.1 841,961 + DDA3937_RS03805 0.39 -0.3 841,962 - DDA3937_RS03805 0.40 -1.2 841,962 - DDA3937_RS03805 0.40 -0.2 841,962 - DDA3937_RS03805 0.40 -0.8 842,016 + DDA3937_RS03805 0.46 +0.1 842,016 + DDA3937_RS03805 0.46 +0.4 842,016 + DDA3937_RS03805 0.46 -0.5 842,017 - DDA3937_RS03805 0.46 +0.2 842,017 - DDA3937_RS03805 0.46 +0.3 842,017 - DDA3937_RS03805 0.46 +0.0 842,028 + DDA3937_RS03805 0.48 +0.2 842,029 - DDA3937_RS03805 0.48 -0.5 842,029 - DDA3937_RS03805 0.48 +0.2 842,129 - DDA3937_RS03805 0.60 -1.1 842,219 - DDA3937_RS03805 0.71 -1.0 842,231 - DDA3937_RS03805 0.73 -2.1 842,231 - DDA3937_RS03805 0.73 -1.7 842,231 - DDA3937_RS03805 0.73 -0.7 842,271 - DDA3937_RS03805 0.78 -1.3 842,345 + DDA3937_RS03805 0.87 -0.4 842,391 - -1.4 842,402 + -1.0 842,402 + -0.4 842,403 - -0.5 842,429 + +2.5 842,449 + -1.3 842,449 + -0.9 842,450 - +0.3 842,475 + +0.9 842,476 - -0.9 842,476 - -0.5 842,533 + -3.2 842,533 + -1.1 842,533 + -1.1 842,533 + -0.6 842,533 + -2.2 842,533 - +0.1 842,534 - +0.4 842,534 - -0.4 842,534 - -2.1 842,534 - +0.2 842,534 - +0.3 842,534 - -0.9 842,534 - +0.2 842,534 - -0.5 842,596 + -1.2 842,596 + -2.5 842,597 - -0.7 842,597 - +0.5 842,790 + -1.6 842,791 - +0.3 842,791 - +1.0 842,909 + DDA3937_RS03810 0.14 +0.6 842,909 + DDA3937_RS03810 0.14 -1.4 842,910 - DDA3937_RS03810 0.14 +1.5 842,910 - DDA3937_RS03810 0.14 +0.4 842,910 - DDA3937_RS03810 0.14 -0.6 842,910 - DDA3937_RS03810 0.14 -0.1 843,128 + DDA3937_RS03810 0.21 +0.2 843,129 - DDA3937_RS03810 0.21 +1.9 843,177 + DDA3937_RS03810 0.22 -0.9 843,177 + DDA3937_RS03810 0.22 -2.2 843,177 + DDA3937_RS03810 0.22 -1.1 843,177 + DDA3937_RS03810 0.22 +1.2 843,177 + DDA3937_RS03810 0.22 -1.4 843,177 + DDA3937_RS03810 0.22 -0.1 843,177 + DDA3937_RS03810 0.22 +1.7 843,177 + DDA3937_RS03810 0.22 +0.3 843,178 - DDA3937_RS03810 0.22 -1.2 843,178 - DDA3937_RS03810 0.22 +0.3 843,178 - DDA3937_RS03810 0.22 +0.7 843,178 - DDA3937_RS03810 0.22 -1.2 843,178 - DDA3937_RS03810 0.22 -1.5 843,178 - DDA3937_RS03810 0.22 -0.7 843,236 + DDA3937_RS03810 0.24 +1.1 843,327 - DDA3937_RS03810 0.27 -1.1
Or see this region's nucleotide sequence