Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS03560 and DDA3937_RS03565 overlap by 4 nucleotides DDA3937_RS03565 and DDA3937_RS03570 are separated by 317 nucleotides DDA3937_RS03570 and DDA3937_RS03575 are separated by 519 nucleotides
DDA3937_RS03560: DDA3937_RS03560 - HlyD family secretion protein, at 784,142 to 785,278
_RS03560
DDA3937_RS03565: DDA3937_RS03565 - MarR family transcriptional regulator, at 785,275 to 785,730
_RS03565
DDA3937_RS03570: DDA3937_RS03570 - L,D-transpeptidase family protein, at 786,048 to 787,145
_RS03570
DDA3937_RS03575: DDA3937_RS03575 - pyruvate:ferredoxin (flavodoxin) oxidoreductase, at 787,665 to 791,198
_RS03575
Position (kb) 786
787
788 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 785.140 kb on + strand, within DDA3937_RS03560 at 785.146 kb on + strand, within DDA3937_RS03560 at 785.147 kb on - strand, within DDA3937_RS03560 at 785.147 kb on - strand, within DDA3937_RS03560 at 785.167 kb on - strand at 785.240 kb on - strand at 785.260 kb on + strand at 785.260 kb on + strand at 785.261 kb on - strand at 785.261 kb on - strand at 785.379 kb on + strand, within DDA3937_RS03565 at 785.379 kb on + strand, within DDA3937_RS03565 at 785.380 kb on - strand, within DDA3937_RS03565 at 785.380 kb on - strand, within DDA3937_RS03565 at 785.383 kb on + strand, within DDA3937_RS03565 at 785.383 kb on + strand, within DDA3937_RS03565 at 785.383 kb on + strand, within DDA3937_RS03565 at 785.413 kb on + strand, within DDA3937_RS03565 at 785.414 kb on - strand, within DDA3937_RS03565 at 785.505 kb on + strand, within DDA3937_RS03565 at 785.613 kb on + strand, within DDA3937_RS03565 at 785.630 kb on + strand, within DDA3937_RS03565 at 785.630 kb on + strand, within DDA3937_RS03565 at 785.630 kb on + strand, within DDA3937_RS03565 at 785.748 kb on - strand at 785.784 kb on + strand at 785.846 kb on + strand at 785.846 kb on + strand at 785.846 kb on + strand at 785.889 kb on + strand at 785.890 kb on - strand at 785.890 kb on - strand at 785.894 kb on + strand at 785.894 kb on + strand at 785.894 kb on + strand at 785.895 kb on - strand at 785.897 kb on + strand at 785.897 kb on + strand at 785.897 kb on + strand at 785.898 kb on - strand at 785.898 kb on - strand at 785.909 kb on + strand at 785.910 kb on - strand at 785.961 kb on + strand at 785.961 kb on + strand at 785.962 kb on - strand at 785.962 kb on - strand at 786.009 kb on + strand at 786.009 kb on + strand at 786.009 kb on + strand at 786.010 kb on - strand at 786.010 kb on - strand at 786.034 kb on - strand at 786.196 kb on - strand, within DDA3937_RS03570 at 786.251 kb on + strand, within DDA3937_RS03570 at 786.392 kb on + strand, within DDA3937_RS03570 at 786.406 kb on + strand, within DDA3937_RS03570 at 786.407 kb on - strand, within DDA3937_RS03570 at 786.493 kb on + strand, within DDA3937_RS03570 at 786.493 kb on + strand, within DDA3937_RS03570 at 786.493 kb on + strand, within DDA3937_RS03570 at 786.493 kb on + strand, within DDA3937_RS03570 at 786.493 kb on + strand, within DDA3937_RS03570 at 786.494 kb on - strand, within DDA3937_RS03570 at 786.580 kb on + strand, within DDA3937_RS03570 at 786.581 kb on - strand, within DDA3937_RS03570 at 786.581 kb on - strand, within DDA3937_RS03570 at 786.595 kb on + strand, within DDA3937_RS03570 at 786.595 kb on + strand, within DDA3937_RS03570 at 786.595 kb on + strand, within DDA3937_RS03570 at 786.596 kb on - strand, within DDA3937_RS03570 at 786.596 kb on - strand, within DDA3937_RS03570 at 786.817 kb on + strand, within DDA3937_RS03570 at 786.817 kb on + strand, within DDA3937_RS03570 at 786.818 kb on - strand, within DDA3937_RS03570 at 786.820 kb on + strand, within DDA3937_RS03570 at 786.820 kb on + strand, within DDA3937_RS03570 at 786.820 kb on + strand, within DDA3937_RS03570 at 786.820 kb on + strand, within DDA3937_RS03570 at 786.820 kb on + strand at 786.820 kb on + strand, within DDA3937_RS03570 at 786.821 kb on - strand, within DDA3937_RS03570 at 786.821 kb on - strand, within DDA3937_RS03570 at 786.821 kb on - strand at 786.821 kb on - strand, within DDA3937_RS03570 at 786.821 kb on - strand, within DDA3937_RS03570 at 786.821 kb on - strand, within DDA3937_RS03570 at 786.957 kb on - strand, within DDA3937_RS03570 at 786.957 kb on - strand, within DDA3937_RS03570 at 786.957 kb on - strand, within DDA3937_RS03570 at 787.020 kb on - strand, within DDA3937_RS03570 at 787.119 kb on + strand at 787.119 kb on + strand at 787.119 kb on + strand at 787.119 kb on + strand at 787.119 kb on + strand at 787.120 kb on - strand at 787.120 kb on - strand at 787.120 kb on - strand at 787.120 kb on - strand at 787.120 kb on - strand at 787.120 kb on - strand at 787.151 kb on + strand at 787.151 kb on + strand at 787.151 kb on + strand at 787.152 kb on - strand at 787.168 kb on - strand at 787.209 kb on + strand at 787.209 kb on + strand at 787.209 kb on + strand at 787.209 kb on + strand at 787.209 kb on + strand at 787.210 kb on - strand at 787.210 kb on - strand at 787.210 kb on - strand at 787.210 kb on - strand at 787.226 kb on + strand at 787.226 kb on + strand at 787.227 kb on - strand at 787.227 kb on - strand at 787.227 kb on - strand at 787.227 kb on - strand at 787.227 kb on - strand at 787.228 kb on + strand at 787.228 kb on + strand at 787.228 kb on + strand at 787.228 kb on + strand at 787.228 kb on + strand at 787.228 kb on + strand at 787.229 kb on - strand at 787.229 kb on - strand at 787.229 kb on - strand at 787.229 kb on - strand at 787.260 kb on + strand at 787.260 kb on + strand at 787.261 kb on - strand at 787.261 kb on - strand at 787.270 kb on + strand at 787.270 kb on + strand at 787.270 kb on + strand at 787.270 kb on + strand at 787.271 kb on - strand at 787.271 kb on - strand at 787.271 kb on - strand at 787.271 kb on - strand at 787.275 kb on + strand at 787.275 kb on + strand at 787.275 kb on + strand at 787.275 kb on + strand at 787.275 kb on + strand at 787.276 kb on - strand at 787.276 kb on - strand at 787.276 kb on - strand at 787.276 kb on - strand at 787.276 kb on - strand at 787.276 kb on - strand at 787.278 kb on - strand at 787.278 kb on - strand at 787.278 kb on - strand at 787.278 kb on - strand at 787.278 kb on - strand at 787.278 kb on - strand at 787.280 kb on - strand at 787.280 kb on - strand at 787.280 kb on - strand at 787.280 kb on - strand at 787.289 kb on - strand at 787.315 kb on + strand at 787.316 kb on - strand at 787.316 kb on - strand at 787.316 kb on - strand at 787.318 kb on + strand at 787.318 kb on + strand at 787.318 kb on + strand at 787.411 kb on + strand at 787.411 kb on + strand at 787.411 kb on + strand at 787.411 kb on + strand at 787.411 kb on + strand at 787.411 kb on + strand at 787.411 kb on + strand at 787.411 kb on + strand at 787.411 kb on + strand at 787.411 kb on + strand at 787.411 kb on + strand at 787.411 kb on + strand at 787.411 kb on + strand at 787.463 kb on + strand at 787.536 kb on + strand at 787.545 kb on + strand at 787.547 kb on + strand at 787.547 kb on + strand at 787.547 kb on + strand at 787.547 kb on + strand at 787.547 kb on + strand at 787.547 kb on + strand at 787.547 kb on + strand at 787.547 kb on + strand at 787.547 kb on + strand at 787.580 kb on + strand at 787.580 kb on + strand at 787.581 kb on - strand at 787.750 kb on + strand at 787.750 kb on + strand at 787.751 kb on - strand at 787.900 kb on + strand at 788.083 kb on + strand, within DDA3937_RS03575 at 788.083 kb on + strand, within DDA3937_RS03575 at 788.083 kb on + strand, within DDA3937_RS03575 at 788.084 kb on - strand, within DDA3937_RS03575 at 788.084 kb on - strand, within DDA3937_RS03575 at 788.095 kb on + strand, within DDA3937_RS03575 at 788.095 kb on + strand, within DDA3937_RS03575 at 788.095 kb on + strand, within DDA3937_RS03575 at 788.096 kb on - strand, within DDA3937_RS03575 at 788.096 kb on - strand, within DDA3937_RS03575
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 785,140 + DDA3937_RS03560 0.88 +1.1 785,146 + DDA3937_RS03560 0.88 +0.9 785,147 - DDA3937_RS03560 0.88 -0.9 785,147 - DDA3937_RS03560 0.88 +0.1 785,167 - -0.5 785,240 - -1.2 785,260 + -2.4 785,260 + -1.7 785,261 - +0.3 785,261 - -1.2 785,379 + DDA3937_RS03565 0.23 +0.9 785,379 + DDA3937_RS03565 0.23 +0.7 785,380 - DDA3937_RS03565 0.23 -0.3 785,380 - DDA3937_RS03565 0.23 -0.0 785,383 + DDA3937_RS03565 0.24 -1.3 785,383 + DDA3937_RS03565 0.24 -0.7 785,383 + DDA3937_RS03565 0.24 -0.9 785,413 + DDA3937_RS03565 0.30 -2.5 785,414 - DDA3937_RS03565 0.30 -0.5 785,505 + DDA3937_RS03565 0.50 +0.7 785,613 + DDA3937_RS03565 0.74 -0.6 785,630 + DDA3937_RS03565 0.78 -1.6 785,630 + DDA3937_RS03565 0.78 -0.5 785,630 + DDA3937_RS03565 0.78 -1.8 785,748 - -1.7 785,784 + -0.6 785,846 + -1.7 785,846 + -0.0 785,846 + +0.5 785,889 + +0.1 785,890 - +0.5 785,890 - +1.1 785,894 + +0.1 785,894 + -0.5 785,894 + -0.5 785,895 - -1.3 785,897 + -1.4 785,897 + -0.8 785,897 + -0.0 785,898 - -0.7 785,898 - -1.7 785,909 + -0.6 785,910 - +0.1 785,961 + -0.9 785,961 + +0.7 785,962 - -0.5 785,962 - -0.2 786,009 + -0.9 786,009 + -1.7 786,009 + -1.7 786,010 - -1.0 786,010 - -0.7 786,034 - -2.1 786,196 - DDA3937_RS03570 0.13 +1.1 786,251 + DDA3937_RS03570 0.18 -0.5 786,392 + DDA3937_RS03570 0.31 +1.5 786,406 + DDA3937_RS03570 0.33 -0.9 786,407 - DDA3937_RS03570 0.33 -1.7 786,493 + DDA3937_RS03570 0.41 -1.5 786,493 + DDA3937_RS03570 0.41 +0.5 786,493 + DDA3937_RS03570 0.41 -1.3 786,493 + DDA3937_RS03570 0.41 -2.1 786,493 + DDA3937_RS03570 0.41 -1.7 786,494 - DDA3937_RS03570 0.41 +0.2 786,580 + DDA3937_RS03570 0.48 -2.9 786,581 - DDA3937_RS03570 0.49 -3.3 786,581 - DDA3937_RS03570 0.49 -1.3 786,595 + DDA3937_RS03570 0.50 -0.9 786,595 + DDA3937_RS03570 0.50 -2.0 786,595 + DDA3937_RS03570 0.50 -0.9 786,596 - DDA3937_RS03570 0.50 -1.0 786,596 - DDA3937_RS03570 0.50 +1.2 786,817 + DDA3937_RS03570 0.70 -2.7 786,817 + DDA3937_RS03570 0.70 -0.9 786,818 - DDA3937_RS03570 0.70 -2.2 786,820 + DDA3937_RS03570 0.70 +0.1 786,820 + DDA3937_RS03570 0.70 -1.1 786,820 + DDA3937_RS03570 0.70 -1.1 786,820 + DDA3937_RS03570 0.70 -2.0 786,820 + +0.9 786,820 + DDA3937_RS03570 0.70 -2.0 786,821 - DDA3937_RS03570 0.70 -1.9 786,821 - DDA3937_RS03570 0.70 -2.5 786,821 - -0.9 786,821 - DDA3937_RS03570 0.70 -0.1 786,821 - DDA3937_RS03570 0.70 -0.1 786,821 - DDA3937_RS03570 0.70 -1.3 786,957 - DDA3937_RS03570 0.83 -0.5 786,957 - DDA3937_RS03570 0.83 -0.3 786,957 - DDA3937_RS03570 0.83 -1.1 787,020 - DDA3937_RS03570 0.89 +0.5 787,119 + -0.9 787,119 + +0.4 787,119 + -0.3 787,119 + -0.5 787,119 + -0.1 787,120 - -3.1 787,120 - -2.2 787,120 - -0.3 787,120 - -1.5 787,120 - -1.3 787,120 - +0.0 787,151 + -0.1 787,151 + -1.3 787,151 + -1.5 787,152 - +0.8 787,168 - +0.1 787,209 + -1.9 787,209 + -2.7 787,209 + -1.9 787,209 + -0.1 787,209 + -2.6 787,210 - -0.3 787,210 - -0.7 787,210 - -0.3 787,210 - +0.2 787,226 + +0.3 787,226 + -0.5 787,227 - -0.1 787,227 - -0.9 787,227 - -0.7 787,227 - -0.1 787,227 - -0.5 787,228 + -0.7 787,228 + +1.1 787,228 + +0.3 787,228 + -0.1 787,228 + -0.5 787,228 + -0.9 787,229 - +0.1 787,229 - +1.1 787,229 - -0.9 787,229 - +0.1 787,260 + -0.1 787,260 + -0.3 787,261 - -0.4 787,261 - -1.7 787,270 + +1.5 787,270 + -1.2 787,270 + +0.0 787,270 + -0.2 787,271 - -1.1 787,271 - -0.0 787,271 - -0.8 787,271 - -0.3 787,275 + -0.7 787,275 + -1.0 787,275 + -0.9 787,275 + +0.6 787,275 + +0.2 787,276 - -0.2 787,276 - +0.0 787,276 - -0.1 787,276 - -0.9 787,276 - +0.1 787,276 - -0.7 787,278 - -0.2 787,278 - -0.3 787,278 - -0.6 787,278 - +0.4 787,278 - -0.1 787,278 - -0.3 787,280 - +0.5 787,280 - +0.9 787,280 - -0.2 787,280 - -2.0 787,289 - +0.2 787,315 + -0.9 787,316 - +1.5 787,316 - -1.7 787,316 - +0.5 787,318 + +0.1 787,318 + -1.4 787,318 + +0.3 787,411 + -0.3 787,411 + -0.5 787,411 + -0.9 787,411 + -0.3 787,411 + +0.6 787,411 + +0.0 787,411 + -1.6 787,411 + -0.9 787,411 + +0.8 787,411 + -0.5 787,411 + -1.3 787,411 + +0.2 787,411 + -0.2 787,463 + -1.1 787,536 + -0.4 787,545 + +0.4 787,547 + -1.9 787,547 + +0.1 787,547 + -0.6 787,547 + -0.1 787,547 + -0.5 787,547 + -0.0 787,547 + +2.1 787,547 + +0.5 787,547 + -1.2 787,580 + +0.7 787,580 + +0.1 787,581 - -0.7 787,750 + -1.4 787,750 + -3.0 787,751 - -0.1 787,900 + -1.5 788,083 + DDA3937_RS03575 0.12 -1.0 788,083 + DDA3937_RS03575 0.12 -1.1 788,083 + DDA3937_RS03575 0.12 -1.9 788,084 - DDA3937_RS03575 0.12 -1.2 788,084 - DDA3937_RS03575 0.12 -1.4 788,095 + DDA3937_RS03575 0.12 -1.1 788,095 + DDA3937_RS03575 0.12 -1.0 788,095 + DDA3937_RS03575 0.12 -1.4 788,096 - DDA3937_RS03575 0.12 -0.6 788,096 - DDA3937_RS03575 0.12 -1.1
Or see this region's nucleotide sequence