Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS03445 and DDA3937_RS03450 are separated by 214 nucleotides DDA3937_RS03450 and DDA3937_RS03455 are separated by 257 nucleotides DDA3937_RS03455 and DDA3937_RS03460 are separated by 805 nucleotides
DDA3937_RS03445: DDA3937_RS03445 - sugar ABC transporter permease, at 752,759 to 753,631
_RS03445
DDA3937_RS03450: DDA3937_RS03450 - TOBE domain-containing protein, at 753,846 to 754,274
_RS03450
DDA3937_RS03455: DDA3937_RS03455 - kdo(2)-lipid IV(A) palmitoleoyltransferase, at 754,532 to 755,452
_RS03455
DDA3937_RS03460: DDA3937_RS03460 - NCS2 family permease, at 756,258 to 757,625
_RS03460
Position (kb) 754
755
756 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 753.540 kb on + strand, within DDA3937_RS03445 at 753.540 kb on + strand, within DDA3937_RS03445 at 753.541 kb on - strand, within DDA3937_RS03445 at 753.555 kb on - strand at 753.641 kb on + strand at 753.642 kb on - strand at 753.677 kb on + strand at 753.677 kb on + strand at 753.677 kb on + strand at 753.677 kb on + strand at 753.677 kb on + strand at 753.678 kb on - strand at 753.678 kb on - strand at 753.678 kb on - strand at 753.678 kb on - strand at 753.693 kb on + strand at 753.694 kb on - strand at 753.743 kb on + strand at 753.748 kb on + strand at 753.748 kb on + strand at 753.770 kb on + strand at 753.813 kb on + strand at 753.814 kb on - strand at 753.819 kb on + strand at 753.820 kb on - strand at 753.820 kb on - strand at 753.824 kb on - strand at 753.832 kb on - strand at 753.845 kb on + strand at 753.845 kb on + strand at 753.846 kb on - strand at 753.846 kb on - strand at 753.925 kb on + strand, within DDA3937_RS03450 at 753.925 kb on + strand, within DDA3937_RS03450 at 753.926 kb on - strand, within DDA3937_RS03450 at 754.139 kb on + strand, within DDA3937_RS03450 at 754.139 kb on + strand, within DDA3937_RS03450 at 754.139 kb on + strand, within DDA3937_RS03450 at 754.140 kb on - strand, within DDA3937_RS03450 at 754.140 kb on - strand, within DDA3937_RS03450 at 754.140 kb on - strand, within DDA3937_RS03450 at 754.239 kb on - strand at 754.314 kb on + strand at 754.402 kb on - strand at 754.402 kb on - strand at 754.402 kb on - strand at 754.402 kb on - strand at 754.486 kb on + strand at 754.486 kb on + strand at 754.486 kb on + strand at 754.487 kb on - strand at 754.487 kb on - strand at 754.487 kb on - strand at 754.487 kb on - strand at 754.487 kb on - strand at 754.487 kb on - strand at 754.524 kb on + strand at 754.524 kb on + strand at 754.530 kb on + strand at 754.531 kb on - strand at 754.531 kb on - strand at 754.550 kb on - strand at 754.711 kb on + strand, within DDA3937_RS03455 at 754.927 kb on + strand, within DDA3937_RS03455 at 754.927 kb on + strand, within DDA3937_RS03455 at 754.985 kb on + strand, within DDA3937_RS03455 at 754.986 kb on - strand, within DDA3937_RS03455 at 755.002 kb on + strand, within DDA3937_RS03455 at 755.002 kb on + strand, within DDA3937_RS03455 at 755.002 kb on + strand, within DDA3937_RS03455 at 755.002 kb on + strand, within DDA3937_RS03455 at 755.003 kb on - strand, within DDA3937_RS03455 at 755.003 kb on - strand, within DDA3937_RS03455 at 755.003 kb on - strand, within DDA3937_RS03455 at 755.085 kb on + strand, within DDA3937_RS03455 at 755.085 kb on + strand, within DDA3937_RS03455 at 755.086 kb on - strand, within DDA3937_RS03455 at 755.086 kb on - strand, within DDA3937_RS03455 at 755.086 kb on - strand, within DDA3937_RS03455 at 755.086 kb on - strand, within DDA3937_RS03455 at 755.113 kb on - strand, within DDA3937_RS03455 at 755.342 kb on + strand, within DDA3937_RS03455 at 755.342 kb on + strand, within DDA3937_RS03455 at 755.342 kb on + strand, within DDA3937_RS03455 at 755.343 kb on - strand, within DDA3937_RS03455 at 755.343 kb on - strand, within DDA3937_RS03455 at 755.390 kb on + strand at 755.390 kb on + strand at 755.390 kb on + strand at 755.391 kb on - strand at 755.391 kb on - strand at 755.391 kb on - strand at 755.391 kb on - strand at 755.391 kb on - strand at 755.394 kb on + strand at 755.394 kb on + strand at 755.394 kb on + strand at 755.394 kb on + strand at 755.394 kb on + strand at 755.394 kb on + strand at 755.395 kb on - strand at 755.444 kb on + strand at 755.444 kb on + strand at 755.494 kb on + strand at 755.494 kb on + strand at 755.495 kb on - strand at 755.541 kb on - strand at 755.597 kb on + strand at 755.597 kb on + strand at 755.598 kb on - strand at 755.598 kb on - strand at 755.598 kb on - strand at 755.598 kb on - strand at 755.598 kb on - strand at 755.623 kb on + strand at 755.624 kb on - strand at 755.624 kb on - strand at 755.633 kb on - strand at 755.646 kb on - strand at 755.682 kb on - strand at 755.716 kb on + strand at 755.716 kb on + strand at 755.716 kb on + strand at 755.716 kb on + strand at 755.717 kb on - strand at 755.760 kb on + strand at 755.761 kb on - strand at 755.761 kb on - strand at 755.821 kb on + strand at 755.848 kb on + strand at 755.943 kb on + strand at 755.944 kb on - strand at 755.978 kb on + strand at 755.978 kb on + strand at 756.054 kb on + strand at 756.135 kb on + strand at 756.136 kb on - strand at 756.216 kb on - strand at 756.219 kb on + strand at 756.219 kb on + strand at 756.219 kb on + strand at 756.219 kb on + strand at 756.220 kb on - strand at 756.220 kb on - strand at 756.220 kb on - strand at 756.220 kb on - strand at 756.220 kb on - strand at 756.221 kb on + strand at 756.222 kb on - strand at 756.231 kb on + strand at 756.231 kb on + strand at 756.266 kb on + strand at 756.329 kb on + strand at 756.329 kb on + strand at 756.361 kb on + strand at 756.362 kb on - strand at 756.428 kb on + strand, within DDA3937_RS03460
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 753,540 + DDA3937_RS03445 0.89 -0.8 753,540 + DDA3937_RS03445 0.89 +0.3 753,541 - DDA3937_RS03445 0.90 -0.2 753,555 - +0.3 753,641 + +1.0 753,642 - -0.1 753,677 + -0.2 753,677 + -0.6 753,677 + +2.0 753,677 + -0.3 753,677 + -0.1 753,678 - -2.9 753,678 - +0.3 753,678 - -1.3 753,678 - +0.2 753,693 + -0.6 753,694 - +0.9 753,743 + +0.3 753,748 + -0.9 753,748 + +0.4 753,770 + +0.2 753,813 + -0.5 753,814 - -1.2 753,819 + -0.7 753,820 - +0.5 753,820 - +0.5 753,824 - -1.1 753,832 - -1.7 753,845 + +0.3 753,845 + -1.2 753,846 - -0.9 753,846 - -0.5 753,925 + DDA3937_RS03450 0.18 +0.5 753,925 + DDA3937_RS03450 0.18 -0.4 753,926 - DDA3937_RS03450 0.19 +0.5 754,139 + DDA3937_RS03450 0.68 -1.5 754,139 + DDA3937_RS03450 0.68 -1.7 754,139 + DDA3937_RS03450 0.68 +0.6 754,140 - DDA3937_RS03450 0.69 -0.3 754,140 - DDA3937_RS03450 0.69 +0.3 754,140 - DDA3937_RS03450 0.69 +3.1 754,239 - -0.1 754,314 + -0.8 754,402 - +0.2 754,402 - -1.1 754,402 - +0.7 754,402 - -0.8 754,486 + -0.7 754,486 + +0.4 754,486 + -0.9 754,487 - -0.3 754,487 - -0.4 754,487 - -0.8 754,487 - -2.2 754,487 - -0.6 754,487 - +0.2 754,524 + -0.0 754,524 + -1.4 754,530 + -1.7 754,531 - +0.1 754,531 - -0.3 754,550 - -1.1 754,711 + DDA3937_RS03455 0.19 -0.5 754,927 + DDA3937_RS03455 0.43 -1.0 754,927 + DDA3937_RS03455 0.43 +0.3 754,985 + DDA3937_RS03455 0.49 -2.8 754,986 - DDA3937_RS03455 0.49 -0.9 755,002 + DDA3937_RS03455 0.51 +0.4 755,002 + DDA3937_RS03455 0.51 +0.1 755,002 + DDA3937_RS03455 0.51 -0.1 755,002 + DDA3937_RS03455 0.51 -0.8 755,003 - DDA3937_RS03455 0.51 -1.8 755,003 - DDA3937_RS03455 0.51 -0.3 755,003 - DDA3937_RS03455 0.51 -1.1 755,085 + DDA3937_RS03455 0.60 -0.9 755,085 + DDA3937_RS03455 0.60 -1.2 755,086 - DDA3937_RS03455 0.60 -1.8 755,086 - DDA3937_RS03455 0.60 -0.6 755,086 - DDA3937_RS03455 0.60 -1.6 755,086 - DDA3937_RS03455 0.60 -1.7 755,113 - DDA3937_RS03455 0.63 -1.0 755,342 + DDA3937_RS03455 0.88 -1.2 755,342 + DDA3937_RS03455 0.88 -1.6 755,342 + DDA3937_RS03455 0.88 -0.7 755,343 - DDA3937_RS03455 0.88 -0.1 755,343 - DDA3937_RS03455 0.88 -0.5 755,390 + -0.1 755,390 + -2.9 755,390 + -0.3 755,391 - -0.8 755,391 - +0.5 755,391 - +0.1 755,391 - -0.7 755,391 - +0.7 755,394 + -1.3 755,394 + -1.1 755,394 + -1.6 755,394 + -0.7 755,394 + -0.8 755,394 + -1.5 755,395 - -2.3 755,444 + +0.2 755,444 + -1.1 755,494 + +1.2 755,494 + -2.5 755,495 - -1.1 755,541 - +1.7 755,597 + +0.6 755,597 + -0.0 755,598 - +1.6 755,598 - -0.7 755,598 - -0.8 755,598 - -0.3 755,598 - -0.1 755,623 + -0.8 755,624 - +0.3 755,624 - -0.8 755,633 - -0.6 755,646 - -0.7 755,682 - -0.9 755,716 + -0.9 755,716 + -1.0 755,716 + +0.4 755,716 + -1.3 755,717 - +1.4 755,760 + +0.9 755,761 - +0.1 755,761 - +0.9 755,821 + -0.5 755,848 + -0.3 755,943 + +0.2 755,944 - -1.1 755,978 + -1.0 755,978 + +0.7 756,054 + -1.7 756,135 + -1.2 756,136 - -0.6 756,216 - -0.1 756,219 + +1.5 756,219 + -1.5 756,219 + -0.3 756,219 + -0.2 756,220 - -0.7 756,220 - -1.3 756,220 - +0.2 756,220 - -1.8 756,220 - +1.3 756,221 + -0.2 756,222 - -0.3 756,231 + +0.9 756,231 + -1.1 756,266 + -1.3 756,329 + +1.3 756,329 + -0.7 756,361 + -0.8 756,362 - -0.8 756,428 + DDA3937_RS03460 0.12 -0.3
Or see this region's nucleotide sequence