Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS03410 and DDA3937_RS03415 are separated by 154 nucleotides DDA3937_RS03415 and DDA3937_RS03420 are separated by 9 nucleotides DDA3937_RS03420 and DDA3937_RS03425 are separated by 68 nucleotides
DDA3937_RS03410: DDA3937_RS03410 - polysaccharide biosynthesis protein, at 744,999 to 746,894
_RS03410
DDA3937_RS03415: DDA3937_RS03415 - NAD-dependent epimerase/dehydratase family protein, at 747,049 to 748,023
_RS03415
DDA3937_RS03420: DDA3937_RS03420 - sugar transferase, at 748,033 to 748,581
_RS03420
DDA3937_RS03425: DDA3937_RS03425 - ABC transporter substrate-binding protein, at 748,650 to 749,972
_RS03425
Position (kb) 747
748
749 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7 at 746.091 kb on + strand, within DDA3937_RS03410 at 746.252 kb on + strand, within DDA3937_RS03410 at 746.252 kb on + strand, within DDA3937_RS03410 at 746.252 kb on + strand, within DDA3937_RS03410 at 746.253 kb on - strand, within DDA3937_RS03410 at 746.253 kb on - strand, within DDA3937_RS03410 at 746.253 kb on - strand, within DDA3937_RS03410 at 746.284 kb on + strand, within DDA3937_RS03410 at 746.284 kb on + strand, within DDA3937_RS03410 at 746.284 kb on + strand, within DDA3937_RS03410 at 746.284 kb on + strand, within DDA3937_RS03410 at 746.284 kb on + strand, within DDA3937_RS03410 at 746.284 kb on + strand, within DDA3937_RS03410 at 746.285 kb on - strand, within DDA3937_RS03410 at 746.285 kb on - strand, within DDA3937_RS03410 at 746.285 kb on - strand, within DDA3937_RS03410 at 746.285 kb on - strand, within DDA3937_RS03410 at 746.286 kb on + strand, within DDA3937_RS03410 at 746.286 kb on + strand, within DDA3937_RS03410 at 746.287 kb on - strand, within DDA3937_RS03410 at 746.413 kb on + strand, within DDA3937_RS03410 at 746.413 kb on + strand, within DDA3937_RS03410 at 746.414 kb on - strand, within DDA3937_RS03410 at 746.414 kb on - strand, within DDA3937_RS03410 at 746.414 kb on - strand, within DDA3937_RS03410 at 746.447 kb on - strand, within DDA3937_RS03410 at 746.447 kb on - strand at 746.447 kb on - strand, within DDA3937_RS03410 at 746.450 kb on + strand, within DDA3937_RS03410 at 746.450 kb on + strand, within DDA3937_RS03410 at 746.451 kb on - strand, within DDA3937_RS03410 at 746.451 kb on - strand, within DDA3937_RS03410 at 746.451 kb on - strand, within DDA3937_RS03410 at 746.476 kb on + strand, within DDA3937_RS03410 at 746.476 kb on + strand, within DDA3937_RS03410 at 746.476 kb on + strand, within DDA3937_RS03410 at 746.476 kb on + strand, within DDA3937_RS03410 at 746.476 kb on + strand, within DDA3937_RS03410 at 746.476 kb on + strand, within DDA3937_RS03410 at 746.477 kb on - strand, within DDA3937_RS03410 at 746.477 kb on - strand, within DDA3937_RS03410 at 746.477 kb on - strand, within DDA3937_RS03410 at 746.477 kb on - strand, within DDA3937_RS03410 at 746.479 kb on + strand, within DDA3937_RS03410 at 746.479 kb on + strand, within DDA3937_RS03410 at 746.479 kb on + strand, within DDA3937_RS03410 at 746.479 kb on + strand, within DDA3937_RS03410 at 746.486 kb on - strand, within DDA3937_RS03410 at 746.486 kb on - strand, within DDA3937_RS03410 at 746.488 kb on + strand, within DDA3937_RS03410 at 746.488 kb on + strand, within DDA3937_RS03410 at 746.488 kb on + strand, within DDA3937_RS03410 at 746.489 kb on - strand, within DDA3937_RS03410 at 746.489 kb on - strand, within DDA3937_RS03410 at 746.545 kb on + strand, within DDA3937_RS03410 at 746.545 kb on + strand, within DDA3937_RS03410 at 746.545 kb on + strand, within DDA3937_RS03410 at 746.546 kb on - strand, within DDA3937_RS03410 at 746.546 kb on - strand, within DDA3937_RS03410 at 746.549 kb on + strand, within DDA3937_RS03410 at 746.549 kb on + strand, within DDA3937_RS03410 at 746.549 kb on + strand, within DDA3937_RS03410 at 746.549 kb on + strand, within DDA3937_RS03410 at 746.549 kb on + strand, within DDA3937_RS03410 at 746.550 kb on - strand, within DDA3937_RS03410 at 746.550 kb on - strand, within DDA3937_RS03410 at 746.550 kb on - strand, within DDA3937_RS03410 at 746.591 kb on + strand, within DDA3937_RS03410 at 746.591 kb on + strand, within DDA3937_RS03410 at 746.591 kb on + strand, within DDA3937_RS03410 at 746.592 kb on - strand, within DDA3937_RS03410 at 746.638 kb on + strand, within DDA3937_RS03410 at 746.639 kb on - strand, within DDA3937_RS03410 at 746.639 kb on - strand, within DDA3937_RS03410 at 746.662 kb on + strand, within DDA3937_RS03410 at 746.662 kb on + strand, within DDA3937_RS03410 at 746.662 kb on + strand, within DDA3937_RS03410 at 746.662 kb on + strand, within DDA3937_RS03410 at 746.662 kb on + strand, within DDA3937_RS03410 at 746.662 kb on + strand at 746.662 kb on + strand, within DDA3937_RS03410 at 746.662 kb on + strand, within DDA3937_RS03410 at 746.680 kb on + strand, within DDA3937_RS03410 at 746.701 kb on - strand, within DDA3937_RS03410 at 746.730 kb on + strand at 746.730 kb on + strand at 746.754 kb on + strand at 746.755 kb on - strand at 746.797 kb on + strand at 746.797 kb on + strand at 746.797 kb on + strand at 746.798 kb on - strand at 746.827 kb on + strand at 746.827 kb on + strand at 746.827 kb on + strand at 746.827 kb on + strand at 746.827 kb on + strand at 746.828 kb on - strand at 746.828 kb on - strand at 746.828 kb on - strand at 746.828 kb on - strand at 746.855 kb on + strand at 746.868 kb on + strand at 746.868 kb on + strand at 746.868 kb on + strand at 746.868 kb on + strand at 746.869 kb on - strand at 746.927 kb on + strand at 746.927 kb on + strand at 746.927 kb on + strand at 746.927 kb on + strand at 746.927 kb on + strand at 746.928 kb on - strand at 746.928 kb on - strand at 746.928 kb on - strand at 746.928 kb on - strand at 746.932 kb on + strand at 746.932 kb on + strand at 746.932 kb on + strand at 746.932 kb on + strand at 746.932 kb on + strand at 746.933 kb on - strand at 746.933 kb on - strand at 746.933 kb on - strand at 746.936 kb on + strand at 746.937 kb on - strand at 747.014 kb on + strand at 747.014 kb on + strand at 747.014 kb on + strand at 747.014 kb on + strand at 747.014 kb on + strand at 747.015 kb on - strand at 747.015 kb on - strand at 747.015 kb on - strand at 747.015 kb on - strand at 747.015 kb on - strand at 747.015 kb on - strand at 747.015 kb on - strand at 747.015 kb on - strand at 747.015 kb on - strand at 747.024 kb on + strand at 747.025 kb on - strand at 747.041 kb on + strand at 747.056 kb on + strand at 747.057 kb on - strand at 747.060 kb on - strand at 747.060 kb on - strand at 747.120 kb on + strand at 747.120 kb on + strand at 747.121 kb on - strand at 747.121 kb on - strand at 747.121 kb on - strand at 747.121 kb on - strand at 747.121 kb on - strand at 747.122 kb on + strand at 747.123 kb on - strand at 747.123 kb on - strand at 747.123 kb on - strand at 747.472 kb on + strand, within DDA3937_RS03415 at 747.472 kb on + strand, within DDA3937_RS03415 at 747.472 kb on + strand, within DDA3937_RS03415 at 747.472 kb on + strand, within DDA3937_RS03415 at 747.473 kb on - strand, within DDA3937_RS03415 at 747.473 kb on - strand, within DDA3937_RS03415 at 747.531 kb on + strand, within DDA3937_RS03415 at 747.532 kb on - strand, within DDA3937_RS03415 at 747.551 kb on - strand, within DDA3937_RS03415 at 747.551 kb on - strand, within DDA3937_RS03415 at 747.683 kb on + strand, within DDA3937_RS03415 at 747.683 kb on + strand, within DDA3937_RS03415 at 747.684 kb on - strand, within DDA3937_RS03415 at 747.940 kb on + strand at 747.940 kb on + strand at 748.030 kb on - strand at 748.032 kb on + strand at 748.032 kb on + strand at 748.032 kb on + strand at 748.033 kb on - strand at 748.033 kb on - strand at 748.050 kb on + strand at 748.052 kb on + strand at 748.052 kb on + strand at 748.052 kb on + strand at 748.052 kb on + strand at 748.052 kb on + strand at 748.052 kb on + strand at 748.052 kb on + strand at 748.052 kb on + strand at 748.052 kb on + strand at 748.053 kb on - strand at 748.053 kb on - strand at 748.053 kb on - strand at 748.053 kb on - strand at 748.053 kb on - strand at 748.053 kb on - strand at 748.055 kb on + strand at 748.055 kb on + strand at 748.055 kb on + strand at 748.056 kb on - strand at 748.105 kb on + strand, within DDA3937_RS03420 at 748.105 kb on + strand, within DDA3937_RS03420 at 748.106 kb on - strand, within DDA3937_RS03420 at 748.284 kb on + strand, within DDA3937_RS03420 at 748.284 kb on + strand, within DDA3937_RS03420 at 748.285 kb on - strand, within DDA3937_RS03420 at 748.311 kb on + strand, within DDA3937_RS03420 at 748.312 kb on - strand, within DDA3937_RS03420 at 748.312 kb on - strand, within DDA3937_RS03420 at 748.462 kb on - strand, within DDA3937_RS03420 at 748.495 kb on - strand, within DDA3937_RS03420 at 748.522 kb on + strand, within DDA3937_RS03420 at 748.522 kb on + strand, within DDA3937_RS03420 at 748.531 kb on + strand at 748.574 kb on + strand at 748.574 kb on + strand at 748.574 kb on + strand at 748.623 kb on + strand at 748.623 kb on + strand at 748.623 kb on + strand at 748.623 kb on + strand at 748.624 kb on - strand at 748.624 kb on - strand at 748.624 kb on - strand at 748.624 kb on - strand at 748.624 kb on - strand at 748.624 kb on - strand at 748.624 kb on - strand at 748.627 kb on + strand at 748.627 kb on + strand at 748.627 kb on + strand at 748.627 kb on + strand at 748.627 kb on + strand at 748.628 kb on - strand at 748.628 kb on - strand at 748.628 kb on - strand at 748.628 kb on - strand at 748.684 kb on + strand at 748.684 kb on + strand at 748.685 kb on - strand at 748.685 kb on - strand at 748.790 kb on + strand, within DDA3937_RS03425 at 748.791 kb on - strand, within DDA3937_RS03425 at 748.791 kb on - strand, within DDA3937_RS03425 at 748.810 kb on + strand, within DDA3937_RS03425 at 748.811 kb on - strand, within DDA3937_RS03425 at 748.811 kb on - strand, within DDA3937_RS03425 at 748.834 kb on + strand, within DDA3937_RS03425 at 748.834 kb on + strand, within DDA3937_RS03425 at 748.835 kb on - strand, within DDA3937_RS03425 at 748.882 kb on + strand, within DDA3937_RS03425 at 748.882 kb on + strand, within DDA3937_RS03425 at 748.882 kb on + strand, within DDA3937_RS03425 at 748.906 kb on + strand, within DDA3937_RS03425 at 748.907 kb on - strand, within DDA3937_RS03425 at 748.930 kb on + strand, within DDA3937_RS03425 at 748.979 kb on - strand, within DDA3937_RS03425 at 748.979 kb on - strand, within DDA3937_RS03425
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 746,091 + DDA3937_RS03410 0.58 -0.1 746,252 + DDA3937_RS03410 0.66 -0.5 746,252 + DDA3937_RS03410 0.66 +0.7 746,252 + DDA3937_RS03410 0.66 -0.8 746,253 - DDA3937_RS03410 0.66 +0.2 746,253 - DDA3937_RS03410 0.66 -0.8 746,253 - DDA3937_RS03410 0.66 -1.7 746,284 + DDA3937_RS03410 0.68 +0.5 746,284 + DDA3937_RS03410 0.68 -0.3 746,284 + DDA3937_RS03410 0.68 -0.5 746,284 + DDA3937_RS03410 0.68 -0.4 746,284 + DDA3937_RS03410 0.68 +1.0 746,284 + DDA3937_RS03410 0.68 -2.2 746,285 - DDA3937_RS03410 0.68 -0.5 746,285 - DDA3937_RS03410 0.68 -1.1 746,285 - DDA3937_RS03410 0.68 +0.7 746,285 - DDA3937_RS03410 0.68 -0.4 746,286 + DDA3937_RS03410 0.68 -0.1 746,286 + DDA3937_RS03410 0.68 -0.5 746,287 - DDA3937_RS03410 0.68 -0.0 746,413 + DDA3937_RS03410 0.75 -2.3 746,413 + DDA3937_RS03410 0.75 -0.1 746,414 - DDA3937_RS03410 0.75 +0.6 746,414 - DDA3937_RS03410 0.75 +0.4 746,414 - DDA3937_RS03410 0.75 -1.1 746,447 - DDA3937_RS03410 0.76 +1.9 746,447 - +0.9 746,447 - DDA3937_RS03410 0.76 +0.1 746,450 + DDA3937_RS03410 0.77 -1.3 746,450 + DDA3937_RS03410 0.77 +0.5 746,451 - DDA3937_RS03410 0.77 -1.2 746,451 - DDA3937_RS03410 0.77 -0.1 746,451 - DDA3937_RS03410 0.77 -1.5 746,476 + DDA3937_RS03410 0.78 +0.5 746,476 + DDA3937_RS03410 0.78 +0.9 746,476 + DDA3937_RS03410 0.78 -0.9 746,476 + DDA3937_RS03410 0.78 -0.1 746,476 + DDA3937_RS03410 0.78 -1.9 746,476 + DDA3937_RS03410 0.78 +0.3 746,477 - DDA3937_RS03410 0.78 +1.5 746,477 - DDA3937_RS03410 0.78 +0.9 746,477 - DDA3937_RS03410 0.78 -0.8 746,477 - DDA3937_RS03410 0.78 -0.9 746,479 + DDA3937_RS03410 0.78 -0.4 746,479 + DDA3937_RS03410 0.78 -0.8 746,479 + DDA3937_RS03410 0.78 -0.7 746,479 + DDA3937_RS03410 0.78 -0.1 746,486 - DDA3937_RS03410 0.78 -0.7 746,486 - DDA3937_RS03410 0.78 -1.3 746,488 + DDA3937_RS03410 0.79 -0.1 746,488 + DDA3937_RS03410 0.79 -0.7 746,488 + DDA3937_RS03410 0.79 -1.1 746,489 - DDA3937_RS03410 0.79 +0.5 746,489 - DDA3937_RS03410 0.79 -0.9 746,545 + DDA3937_RS03410 0.82 -0.9 746,545 + DDA3937_RS03410 0.82 -1.1 746,545 + DDA3937_RS03410 0.82 +0.7 746,546 - DDA3937_RS03410 0.82 +0.6 746,546 - DDA3937_RS03410 0.82 -1.3 746,549 + DDA3937_RS03410 0.82 -0.4 746,549 + DDA3937_RS03410 0.82 +1.4 746,549 + DDA3937_RS03410 0.82 +0.5 746,549 + DDA3937_RS03410 0.82 -1.1 746,549 + DDA3937_RS03410 0.82 -1.5 746,550 - DDA3937_RS03410 0.82 -0.5 746,550 - DDA3937_RS03410 0.82 +0.2 746,550 - DDA3937_RS03410 0.82 -0.7 746,591 + DDA3937_RS03410 0.84 -0.7 746,591 + DDA3937_RS03410 0.84 +0.3 746,591 + DDA3937_RS03410 0.84 -0.9 746,592 - DDA3937_RS03410 0.84 -0.5 746,638 + DDA3937_RS03410 0.86 +0.5 746,639 - DDA3937_RS03410 0.86 -0.2 746,639 - DDA3937_RS03410 0.86 -0.4 746,662 + DDA3937_RS03410 0.88 -0.4 746,662 + DDA3937_RS03410 0.88 -0.9 746,662 + DDA3937_RS03410 0.88 -1.3 746,662 + DDA3937_RS03410 0.88 -0.8 746,662 + DDA3937_RS03410 0.88 +0.9 746,662 + -0.5 746,662 + DDA3937_RS03410 0.88 -1.9 746,662 + DDA3937_RS03410 0.88 +0.3 746,680 + DDA3937_RS03410 0.89 -1.5 746,701 - DDA3937_RS03410 0.90 +0.7 746,730 + -1.3 746,730 + -2.3 746,754 + -0.4 746,755 - -1.3 746,797 + -0.6 746,797 + -1.8 746,797 + -0.1 746,798 - +0.0 746,827 + -0.0 746,827 + -0.4 746,827 + -0.1 746,827 + +0.2 746,827 + -1.2 746,828 - +0.2 746,828 - -1.6 746,828 - -0.7 746,828 - -0.0 746,855 + +0.1 746,868 + -0.4 746,868 + -2.3 746,868 + -0.6 746,868 + -0.6 746,869 - -0.2 746,927 + -1.9 746,927 + -1.1 746,927 + +0.2 746,927 + +0.2 746,927 + -1.1 746,928 - +0.5 746,928 - +1.5 746,928 - -1.1 746,928 - +2.0 746,932 + +0.4 746,932 + -3.0 746,932 + -0.5 746,932 + -2.4 746,932 + +0.3 746,933 - +7.4 746,933 - +0.1 746,933 - +0.1 746,936 + -2.7 746,937 - +0.0 747,014 + +0.1 747,014 + -0.4 747,014 + +0.2 747,014 + +0.7 747,014 + -1.5 747,015 - +0.4 747,015 - +0.7 747,015 - +0.5 747,015 - +1.0 747,015 - -0.3 747,015 - -0.0 747,015 - -1.0 747,015 - -0.9 747,015 - +0.3 747,024 + +0.0 747,025 - -0.1 747,041 + +1.5 747,056 + -0.6 747,057 - +0.2 747,060 - -0.5 747,060 - +0.5 747,120 + +2.4 747,120 + -1.6 747,121 - +0.3 747,121 - +1.0 747,121 - -1.1 747,121 - -0.4 747,121 - -1.3 747,122 + -1.7 747,123 - -0.2 747,123 - -1.5 747,123 - -1.3 747,472 + DDA3937_RS03415 0.43 -1.5 747,472 + DDA3937_RS03415 0.43 -1.3 747,472 + DDA3937_RS03415 0.43 -1.8 747,472 + DDA3937_RS03415 0.43 -0.5 747,473 - DDA3937_RS03415 0.43 -1.7 747,473 - DDA3937_RS03415 0.43 -1.4 747,531 + DDA3937_RS03415 0.49 -1.7 747,532 - DDA3937_RS03415 0.50 -2.2 747,551 - DDA3937_RS03415 0.51 +0.5 747,551 - DDA3937_RS03415 0.51 -0.5 747,683 + DDA3937_RS03415 0.65 -0.1 747,683 + DDA3937_RS03415 0.65 -1.2 747,684 - DDA3937_RS03415 0.65 -0.9 747,940 + -0.1 747,940 + -2.2 748,030 - -1.5 748,032 + -1.3 748,032 + -1.3 748,032 + +0.5 748,033 - +0.5 748,033 - -2.1 748,050 + -2.8 748,052 + -2.9 748,052 + -1.5 748,052 + -1.1 748,052 + -1.3 748,052 + -1.2 748,052 + -2.1 748,052 + -2.5 748,052 + +0.5 748,052 + -2.9 748,053 - -2.7 748,053 - -0.1 748,053 - -2.5 748,053 - -0.5 748,053 - -1.8 748,053 - -2.5 748,055 + -1.1 748,055 + -0.8 748,055 + -0.1 748,056 - -0.9 748,105 + DDA3937_RS03420 0.13 -2.1 748,105 + DDA3937_RS03420 0.13 -1.8 748,106 - DDA3937_RS03420 0.13 +0.9 748,284 + DDA3937_RS03420 0.46 -0.5 748,284 + DDA3937_RS03420 0.46 -1.3 748,285 - DDA3937_RS03420 0.46 -2.1 748,311 + DDA3937_RS03420 0.51 -2.2 748,312 - DDA3937_RS03420 0.51 -2.5 748,312 - DDA3937_RS03420 0.51 -1.3 748,462 - DDA3937_RS03420 0.78 -0.7 748,495 - DDA3937_RS03420 0.84 -0.7 748,522 + DDA3937_RS03420 0.89 -0.5 748,522 + DDA3937_RS03420 0.89 -1.6 748,531 + +0.7 748,574 + -2.0 748,574 + -2.6 748,574 + -0.5 748,623 + -0.3 748,623 + -0.3 748,623 + -1.4 748,623 + -0.5 748,624 - +0.4 748,624 - +0.6 748,624 - -0.3 748,624 - +0.1 748,624 - +0.5 748,624 - -1.4 748,624 - +1.1 748,627 + +0.9 748,627 + -0.3 748,627 + -1.2 748,627 + +0.9 748,627 + -0.2 748,628 - -0.7 748,628 - +0.9 748,628 - +0.1 748,628 - -0.5 748,684 + -1.3 748,684 + +0.5 748,685 - +0.9 748,685 - -1.3 748,790 + DDA3937_RS03425 0.11 -0.5 748,791 - DDA3937_RS03425 0.11 +0.3 748,791 - DDA3937_RS03425 0.11 -0.3 748,810 + DDA3937_RS03425 0.12 -2.1 748,811 - DDA3937_RS03425 0.12 -0.9 748,811 - DDA3937_RS03425 0.12 -1.8 748,834 + DDA3937_RS03425 0.14 +0.1 748,834 + DDA3937_RS03425 0.14 +0.9 748,835 - DDA3937_RS03425 0.14 -0.1 748,882 + DDA3937_RS03425 0.18 +0.3 748,882 + DDA3937_RS03425 0.18 -2.6 748,882 + DDA3937_RS03425 0.18 +0.1 748,906 + DDA3937_RS03425 0.19 -0.8 748,907 - DDA3937_RS03425 0.19 +0.1 748,930 + DDA3937_RS03425 0.21 -0.6 748,979 - DDA3937_RS03425 0.25 -0.1 748,979 - DDA3937_RS03425 0.25 -1.3
Or see this region's nucleotide sequence