Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02645 and DDA3937_RS02650 overlap by 4 nucleotides DDA3937_RS02650 and DDA3937_RS02655 are separated by 496 nucleotides
DDA3937_RS02645: DDA3937_RS02645 - DUF1778 domain-containing protein, at 587,253 to 587,546
_RS02645
DDA3937_RS02650: DDA3937_RS02650 - GNAT family N-acetyltransferase, at 587,543 to 588,031
_RS02650
DDA3937_RS02655: DDA3937_RS02655 - RNA-directed DNA polymerase, at 588,528 to 590,570
_RS02655
Position (kb) 587
588
589 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 586.564 kb on + strand at 586.593 kb on + strand at 586.598 kb on + strand at 586.598 kb on + strand at 586.629 kb on + strand at 586.687 kb on + strand at 586.688 kb on - strand at 586.692 kb on - strand at 586.692 kb on - strand at 586.692 kb on - strand at 586.693 kb on + strand at 586.693 kb on + strand at 586.694 kb on - strand at 586.752 kb on + strand at 586.752 kb on + strand at 586.786 kb on + strand at 586.786 kb on + strand at 586.786 kb on + strand at 586.786 kb on + strand at 586.787 kb on - strand at 586.787 kb on - strand at 586.787 kb on - strand at 586.834 kb on + strand at 586.835 kb on - strand at 586.835 kb on - strand at 586.835 kb on - strand at 586.835 kb on - strand at 586.933 kb on + strand at 586.933 kb on + strand at 586.933 kb on + strand at 586.934 kb on - strand at 586.934 kb on - strand at 586.934 kb on - strand at 586.992 kb on + strand at 586.996 kb on + strand at 586.997 kb on - strand at 587.031 kb on - strand at 587.031 kb on - strand at 587.033 kb on + strand at 587.033 kb on + strand at 587.045 kb on + strand at 587.067 kb on + strand at 587.067 kb on + strand at 587.126 kb on + strand at 587.126 kb on + strand at 587.126 kb on + strand at 587.126 kb on + strand at 587.126 kb on + strand at 587.126 kb on + strand at 587.126 kb on + strand at 587.126 kb on + strand at 587.127 kb on - strand at 587.127 kb on - strand at 587.170 kb on + strand at 587.170 kb on + strand at 587.215 kb on - strand at 587.231 kb on + strand at 587.231 kb on + strand at 587.232 kb on - strand at 587.232 kb on - strand at 587.235 kb on - strand at 587.268 kb on - strand at 587.299 kb on + strand, within DDA3937_RS02645 at 587.300 kb on - strand, within DDA3937_RS02645 at 587.449 kb on - strand, within DDA3937_RS02645 at 587.471 kb on - strand, within DDA3937_RS02645 at 587.580 kb on + strand at 587.580 kb on + strand at 587.580 kb on + strand at 587.580 kb on + strand at 587.580 kb on + strand at 587.581 kb on - strand at 587.581 kb on - strand at 587.612 kb on - strand, within DDA3937_RS02650 at 587.612 kb on - strand, within DDA3937_RS02650 at 587.705 kb on + strand, within DDA3937_RS02650 at 587.705 kb on + strand, within DDA3937_RS02650 at 587.706 kb on - strand, within DDA3937_RS02650 at 587.706 kb on - strand, within DDA3937_RS02650 at 587.706 kb on - strand, within DDA3937_RS02650 at 587.708 kb on + strand, within DDA3937_RS02650 at 587.768 kb on - strand, within DDA3937_RS02650 at 587.811 kb on + strand, within DDA3937_RS02650 at 587.815 kb on + strand, within DDA3937_RS02650 at 587.816 kb on - strand, within DDA3937_RS02650 at 587.816 kb on - strand, within DDA3937_RS02650 at 587.823 kb on + strand, within DDA3937_RS02650 at 587.823 kb on + strand, within DDA3937_RS02650 at 587.823 kb on + strand, within DDA3937_RS02650 at 587.824 kb on - strand at 587.824 kb on - strand, within DDA3937_RS02650 at 587.824 kb on - strand, within DDA3937_RS02650 at 587.895 kb on + strand, within DDA3937_RS02650 at 587.895 kb on + strand, within DDA3937_RS02650 at 587.895 kb on + strand, within DDA3937_RS02650 at 587.896 kb on - strand, within DDA3937_RS02650 at 587.896 kb on - strand, within DDA3937_RS02650 at 587.896 kb on - strand, within DDA3937_RS02650 at 587.896 kb on - strand, within DDA3937_RS02650 at 587.896 kb on - strand, within DDA3937_RS02650 at 587.896 kb on - strand, within DDA3937_RS02650 at 587.896 kb on - strand, within DDA3937_RS02650 at 587.899 kb on + strand, within DDA3937_RS02650 at 588.025 kb on + strand at 588.026 kb on - strand at 588.029 kb on + strand at 588.162 kb on + strand at 588.179 kb on - strand at 588.184 kb on + strand at 588.188 kb on + strand at 588.212 kb on + strand at 588.212 kb on + strand at 588.220 kb on + strand at 588.237 kb on + strand at 588.238 kb on - strand at 588.245 kb on - strand at 588.245 kb on - strand at 588.248 kb on + strand at 588.249 kb on - strand at 588.249 kb on - strand at 588.265 kb on - strand at 588.297 kb on - strand at 588.336 kb on + strand at 588.336 kb on + strand at 588.338 kb on + strand at 588.338 kb on + strand at 588.346 kb on + strand at 588.347 kb on - strand at 588.369 kb on + strand at 588.372 kb on + strand at 588.376 kb on + strand at 588.376 kb on + strand at 588.377 kb on - strand at 588.394 kb on - strand at 588.443 kb on - strand at 588.443 kb on - strand at 588.464 kb on + strand at 588.464 kb on + strand at 588.464 kb on + strand at 588.464 kb on + strand at 588.464 kb on + strand at 588.465 kb on - strand at 588.465 kb on - strand at 588.465 kb on - strand at 588.465 kb on - strand at 588.465 kb on - strand at 588.465 kb on - strand at 588.465 kb on - strand at 588.467 kb on - strand at 588.534 kb on + strand at 588.616 kb on - strand at 588.644 kb on + strand at 588.680 kb on + strand at 588.685 kb on - strand at 588.685 kb on - strand at 588.829 kb on + strand, within DDA3937_RS02655 at 588.914 kb on + strand, within DDA3937_RS02655 at 588.943 kb on + strand, within DDA3937_RS02655 at 588.976 kb on + strand, within DDA3937_RS02655
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 586,564 + +1.1 586,593 + +0.5 586,598 + -0.3 586,598 + -0.4 586,629 + -0.3 586,687 + -1.5 586,688 - -1.1 586,692 - +0.5 586,692 - -0.6 586,692 - +0.3 586,693 + -0.9 586,693 + -1.1 586,694 - +0.7 586,752 + +0.8 586,752 + +0.1 586,786 + -1.1 586,786 + +2.4 586,786 + -0.5 586,786 + -1.5 586,787 - -0.3 586,787 - +0.9 586,787 - -0.6 586,834 + -0.4 586,835 - -0.1 586,835 - -1.5 586,835 - -2.3 586,835 - -0.4 586,933 + -1.3 586,933 + -0.9 586,933 + -1.3 586,934 - -0.9 586,934 - -1.1 586,934 - +1.2 586,992 + +0.0 586,996 + -0.7 586,997 - -0.1 587,031 - +1.2 587,031 - +1.5 587,033 + +1.1 587,033 + -0.5 587,045 + -0.4 587,067 + -0.5 587,067 + -0.7 587,126 + +2.5 587,126 + +0.8 587,126 + +1.5 587,126 + -0.1 587,126 + -0.2 587,126 + -0.9 587,126 + -0.7 587,126 + -1.9 587,127 - -0.8 587,127 - +0.4 587,170 + -0.3 587,170 + -0.2 587,215 - +1.2 587,231 + +1.1 587,231 + -0.3 587,232 - +0.3 587,232 - -1.2 587,235 - -0.1 587,268 - -0.2 587,299 + DDA3937_RS02645 0.16 +0.5 587,300 - DDA3937_RS02645 0.16 -0.9 587,449 - DDA3937_RS02645 0.67 -1.2 587,471 - DDA3937_RS02645 0.74 +0.0 587,580 + -0.6 587,580 + +0.2 587,580 + -0.1 587,580 + -1.8 587,580 + -0.2 587,581 - -0.1 587,581 - +0.4 587,612 - DDA3937_RS02650 0.14 +0.5 587,612 - DDA3937_RS02650 0.14 +0.2 587,705 + DDA3937_RS02650 0.33 -0.8 587,705 + DDA3937_RS02650 0.33 -1.2 587,706 - DDA3937_RS02650 0.33 +1.5 587,706 - DDA3937_RS02650 0.33 +0.4 587,706 - DDA3937_RS02650 0.33 -1.5 587,708 + DDA3937_RS02650 0.34 -0.6 587,768 - DDA3937_RS02650 0.46 -1.2 587,811 + DDA3937_RS02650 0.55 -0.6 587,815 + DDA3937_RS02650 0.56 -1.1 587,816 - DDA3937_RS02650 0.56 -1.0 587,816 - DDA3937_RS02650 0.56 +0.2 587,823 + DDA3937_RS02650 0.57 -0.3 587,823 + DDA3937_RS02650 0.57 -0.8 587,823 + DDA3937_RS02650 0.57 +0.6 587,824 - -0.5 587,824 - DDA3937_RS02650 0.57 -1.3 587,824 - DDA3937_RS02650 0.57 +5.7 587,895 + DDA3937_RS02650 0.72 -2.6 587,895 + DDA3937_RS02650 0.72 +1.6 587,895 + DDA3937_RS02650 0.72 +0.8 587,896 - DDA3937_RS02650 0.72 -0.2 587,896 - DDA3937_RS02650 0.72 +1.5 587,896 - DDA3937_RS02650 0.72 -1.0 587,896 - DDA3937_RS02650 0.72 -1.1 587,896 - DDA3937_RS02650 0.72 +1.3 587,896 - DDA3937_RS02650 0.72 -0.5 587,896 - DDA3937_RS02650 0.72 -1.1 587,899 + DDA3937_RS02650 0.73 +1.9 588,025 + +2.7 588,026 - -0.7 588,029 + -0.7 588,162 + +0.1 588,179 - +1.8 588,184 + +2.3 588,188 + -2.4 588,212 + +0.9 588,212 + -1.2 588,220 + +0.3 588,237 + +2.1 588,238 - -0.8 588,245 - +0.9 588,245 - +0.7 588,248 + +0.4 588,249 - -1.3 588,249 - -0.4 588,265 - -0.1 588,297 - -0.6 588,336 + -1.3 588,336 + +1.5 588,338 + -0.4 588,338 + +1.9 588,346 + -1.4 588,347 - -2.3 588,369 + -0.3 588,372 + -0.5 588,376 + -0.8 588,376 + -0.3 588,377 - -2.3 588,394 - -0.1 588,443 - -0.4 588,443 - -0.6 588,464 + -1.3 588,464 + -1.3 588,464 + +0.5 588,464 + +0.5 588,464 + -0.8 588,465 - +0.5 588,465 - +2.2 588,465 - +0.1 588,465 - -0.3 588,465 - +3.0 588,465 - +0.5 588,465 - -0.8 588,467 - -2.6 588,534 + -1.2 588,616 - +0.2 588,644 + -1.1 588,680 + +0.3 588,685 - +0.2 588,685 - -0.3 588,829 + DDA3937_RS02655 0.15 +0.0 588,914 + DDA3937_RS02655 0.19 +0.1 588,943 + DDA3937_RS02655 0.20 -1.0 588,976 + DDA3937_RS02655 0.22 -1.6
Or see this region's nucleotide sequence