Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02500 and DDA3937_RS02505 are separated by 47 nucleotides DDA3937_RS02505 and DDA3937_RS02510 overlap by 4 nucleotides
DDA3937_RS02500: DDA3937_RS02500 - ABC transporter ATP-binding protein, at 553,639 to 554,454
_RS02500
DDA3937_RS02505: DDA3937_RS02505 - ABC transporter substrate-binding protein, at 554,502 to 555,443
_RS02505
DDA3937_RS02510: DDA3937_RS02510 - iron ABC transporter permease, at 555,440 to 556,438
_RS02510
Position (kb) 554
555
556 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 553.516 kb on - strand at 553.516 kb on - strand at 553.525 kb on - strand at 553.525 kb on - strand at 553.525 kb on - strand at 553.525 kb on - strand at 553.670 kb on + strand at 553.671 kb on - strand at 553.693 kb on + strand at 553.694 kb on - strand at 553.694 kb on - strand at 553.719 kb on + strand at 553.945 kb on + strand, within DDA3937_RS02500 at 553.945 kb on + strand, within DDA3937_RS02500 at 553.945 kb on + strand, within DDA3937_RS02500 at 553.945 kb on + strand, within DDA3937_RS02500 at 553.946 kb on - strand, within DDA3937_RS02500 at 553.946 kb on - strand, within DDA3937_RS02500 at 553.946 kb on - strand, within DDA3937_RS02500 at 553.946 kb on - strand, within DDA3937_RS02500 at 553.946 kb on - strand, within DDA3937_RS02500 at 553.946 kb on - strand, within DDA3937_RS02500 at 553.946 kb on - strand, within DDA3937_RS02500 at 554.046 kb on - strand, within DDA3937_RS02500 at 554.226 kb on - strand, within DDA3937_RS02500 at 554.228 kb on + strand, within DDA3937_RS02500 at 554.229 kb on - strand, within DDA3937_RS02500 at 554.229 kb on - strand, within DDA3937_RS02500 at 554.229 kb on - strand, within DDA3937_RS02500 at 554.229 kb on - strand, within DDA3937_RS02500 at 554.334 kb on + strand, within DDA3937_RS02500 at 554.334 kb on + strand, within DDA3937_RS02500 at 554.334 kb on + strand, within DDA3937_RS02500 at 554.334 kb on + strand, within DDA3937_RS02500 at 554.334 kb on + strand, within DDA3937_RS02500 at 554.335 kb on - strand, within DDA3937_RS02500 at 554.335 kb on - strand, within DDA3937_RS02500 at 554.335 kb on - strand, within DDA3937_RS02500 at 554.335 kb on - strand, within DDA3937_RS02500 at 554.335 kb on - strand, within DDA3937_RS02500 at 554.335 kb on - strand, within DDA3937_RS02500 at 554.335 kb on - strand, within DDA3937_RS02500 at 554.335 kb on - strand, within DDA3937_RS02500 at 554.335 kb on - strand, within DDA3937_RS02500 at 554.335 kb on - strand, within DDA3937_RS02500 at 554.338 kb on + strand, within DDA3937_RS02500 at 554.339 kb on - strand, within DDA3937_RS02500 at 554.436 kb on + strand at 554.436 kb on + strand at 554.437 kb on - strand at 554.450 kb on + strand at 554.479 kb on + strand at 554.479 kb on + strand at 554.700 kb on + strand, within DDA3937_RS02505 at 554.761 kb on - strand, within DDA3937_RS02505 at 554.820 kb on + strand, within DDA3937_RS02505 at 554.820 kb on + strand, within DDA3937_RS02505 at 554.821 kb on - strand, within DDA3937_RS02505 at 554.821 kb on - strand, within DDA3937_RS02505 at 554.821 kb on - strand, within DDA3937_RS02505 at 554.884 kb on + strand, within DDA3937_RS02505 at 554.949 kb on + strand, within DDA3937_RS02505 at 555.045 kb on - strand, within DDA3937_RS02505 at 555.045 kb on - strand, within DDA3937_RS02505 at 555.076 kb on + strand, within DDA3937_RS02505 at 555.076 kb on + strand, within DDA3937_RS02505 at 555.076 kb on + strand, within DDA3937_RS02505 at 555.085 kb on - strand, within DDA3937_RS02505 at 555.101 kb on + strand, within DDA3937_RS02505 at 555.123 kb on + strand, within DDA3937_RS02505 at 555.124 kb on - strand, within DDA3937_RS02505 at 555.124 kb on - strand, within DDA3937_RS02505 at 555.346 kb on - strand, within DDA3937_RS02505 at 555.360 kb on + strand at 555.458 kb on + strand at 555.480 kb on + strand at 555.480 kb on + strand at 555.480 kb on + strand at 555.480 kb on + strand at 555.480 kb on + strand at 555.480 kb on + strand at 555.481 kb on - strand at 555.481 kb on - strand at 555.481 kb on - strand at 555.481 kb on - strand at 555.481 kb on - strand at 555.483 kb on + strand at 555.484 kb on - strand at 555.484 kb on - strand at 555.913 kb on + strand, within DDA3937_RS02510 at 555.914 kb on - strand, within DDA3937_RS02510 at 555.944 kb on + strand, within DDA3937_RS02510 at 556.044 kb on + strand, within DDA3937_RS02510 at 556.436 kb on + strand at 556.437 kb on - strand at 556.441 kb on - strand at 556.441 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 553,516 - +0.2 553,516 - -0.0 553,525 - +1.9 553,525 - -0.8 553,525 - +0.4 553,525 - +1.2 553,670 + +1.6 553,671 - +0.7 553,693 + -0.3 553,694 - -1.4 553,694 - -0.6 553,719 + -0.6 553,945 + DDA3937_RS02500 0.38 -0.9 553,945 + DDA3937_RS02500 0.38 +0.0 553,945 + DDA3937_RS02500 0.38 -0.5 553,945 + DDA3937_RS02500 0.38 -1.8 553,946 - DDA3937_RS02500 0.38 +0.2 553,946 - DDA3937_RS02500 0.38 +0.4 553,946 - DDA3937_RS02500 0.38 -1.0 553,946 - DDA3937_RS02500 0.38 +0.2 553,946 - DDA3937_RS02500 0.38 -1.4 553,946 - DDA3937_RS02500 0.38 +0.2 553,946 - DDA3937_RS02500 0.38 +0.4 554,046 - DDA3937_RS02500 0.50 -1.0 554,226 - DDA3937_RS02500 0.72 -1.3 554,228 + DDA3937_RS02500 0.72 -0.9 554,229 - DDA3937_RS02500 0.72 +0.2 554,229 - DDA3937_RS02500 0.72 +0.2 554,229 - DDA3937_RS02500 0.72 -1.1 554,229 - DDA3937_RS02500 0.72 -0.6 554,334 + DDA3937_RS02500 0.85 -0.4 554,334 + DDA3937_RS02500 0.85 -0.8 554,334 + DDA3937_RS02500 0.85 -1.2 554,334 + DDA3937_RS02500 0.85 -0.6 554,334 + DDA3937_RS02500 0.85 -0.4 554,335 - DDA3937_RS02500 0.85 -0.4 554,335 - DDA3937_RS02500 0.85 -0.1 554,335 - DDA3937_RS02500 0.85 -1.5 554,335 - DDA3937_RS02500 0.85 -1.0 554,335 - DDA3937_RS02500 0.85 +2.7 554,335 - DDA3937_RS02500 0.85 +0.0 554,335 - DDA3937_RS02500 0.85 +0.8 554,335 - DDA3937_RS02500 0.85 -0.7 554,335 - DDA3937_RS02500 0.85 -0.7 554,335 - DDA3937_RS02500 0.85 +0.7 554,338 + DDA3937_RS02500 0.86 -0.4 554,339 - DDA3937_RS02500 0.86 +1.2 554,436 + -0.9 554,436 + -1.4 554,437 - -0.2 554,450 + -1.9 554,479 + -0.0 554,479 + -0.9 554,700 + DDA3937_RS02505 0.21 -0.5 554,761 - DDA3937_RS02505 0.27 +1.1 554,820 + DDA3937_RS02505 0.34 -0.1 554,820 + DDA3937_RS02505 0.34 -1.6 554,821 - DDA3937_RS02505 0.34 -0.2 554,821 - DDA3937_RS02505 0.34 -1.0 554,821 - DDA3937_RS02505 0.34 +1.0 554,884 + DDA3937_RS02505 0.41 +0.3 554,949 + DDA3937_RS02505 0.47 +0.2 555,045 - DDA3937_RS02505 0.58 -0.9 555,045 - DDA3937_RS02505 0.58 -0.1 555,076 + DDA3937_RS02505 0.61 -0.7 555,076 + DDA3937_RS02505 0.61 -0.9 555,076 + DDA3937_RS02505 0.61 +2.9 555,085 - DDA3937_RS02505 0.62 -2.7 555,101 + DDA3937_RS02505 0.64 -0.1 555,123 + DDA3937_RS02505 0.66 +1.6 555,124 - DDA3937_RS02505 0.66 -0.1 555,124 - DDA3937_RS02505 0.66 -0.3 555,346 - DDA3937_RS02505 0.90 +0.4 555,360 + -0.4 555,458 + -1.7 555,480 + -0.4 555,480 + -1.4 555,480 + -0.2 555,480 + +0.3 555,480 + +1.6 555,480 + +0.2 555,481 - -0.4 555,481 - -0.9 555,481 - +2.6 555,481 - -1.1 555,481 - +3.8 555,483 + +0.3 555,484 - -1.4 555,484 - -0.6 555,913 + DDA3937_RS02510 0.47 +0.3 555,914 - DDA3937_RS02510 0.47 -0.9 555,944 + DDA3937_RS02510 0.50 +0.1 556,044 + DDA3937_RS02510 0.60 +0.2 556,436 + +0.6 556,437 - -0.1 556,441 - +0.2 556,441 - -0.2
Or see this region's nucleotide sequence