Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS01815 and DDA3937_RS01820 are separated by 352 nucleotides DDA3937_RS01820 and DDA3937_RS01825 are separated by 4 nucleotides DDA3937_RS01825 and DDA3937_RS01830 are separated by 130 nucleotides
DDA3937_RS01815: DDA3937_RS01815 - cystathionine beta-lyase, at 403,106 to 404,299
_RS01815
DDA3937_RS01820: DDA3937_RS01820 - tol-pal system-associated acyl-CoA thioesterase, at 404,652 to 405,500
_RS01820
DDA3937_RS01825: DDA3937_RS01825 - TonB system transport protein ExbD, at 405,505 to 405,924
_RS01825
DDA3937_RS01830: DDA3937_RS01830 - Qnr family pentapeptide repeat protein, at 406,055 to 406,705
_RS01830
Position (kb) 404
405
406 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 403.668 kb on + strand, within DDA3937_RS01815 at 403.668 kb on + strand, within DDA3937_RS01815 at 403.668 kb on + strand, within DDA3937_RS01815 at 403.669 kb on - strand, within DDA3937_RS01815 at 403.669 kb on - strand, within DDA3937_RS01815 at 403.693 kb on + strand, within DDA3937_RS01815 at 404.134 kb on - strand, within DDA3937_RS01815 at 404.196 kb on - strand at 404.229 kb on - strand at 404.313 kb on + strand at 404.314 kb on - strand at 404.343 kb on + strand at 404.344 kb on - strand at 404.344 kb on - strand at 404.383 kb on + strand at 404.384 kb on - strand at 404.387 kb on + strand at 404.414 kb on + strand at 404.414 kb on + strand at 404.414 kb on + strand at 404.415 kb on - strand at 404.441 kb on + strand at 404.441 kb on + strand at 404.442 kb on - strand at 404.448 kb on - strand at 404.448 kb on - strand at 404.473 kb on - strand at 404.476 kb on - strand at 404.510 kb on + strand at 404.510 kb on + strand at 404.527 kb on + strand at 404.565 kb on + strand at 404.582 kb on + strand at 404.582 kb on + strand at 404.582 kb on + strand at 404.583 kb on - strand at 404.583 kb on - strand at 404.583 kb on - strand at 404.583 kb on - strand at 404.586 kb on - strand at 404.639 kb on + strand at 404.811 kb on + strand, within DDA3937_RS01820 at 404.811 kb on + strand, within DDA3937_RS01820 at 404.812 kb on - strand at 404.984 kb on + strand, within DDA3937_RS01820 at 405.227 kb on + strand, within DDA3937_RS01820 at 405.348 kb on + strand, within DDA3937_RS01820 at 405.348 kb on + strand, within DDA3937_RS01820 at 405.348 kb on + strand, within DDA3937_RS01820 at 405.349 kb on - strand, within DDA3937_RS01820 at 405.349 kb on - strand, within DDA3937_RS01820 at 405.350 kb on + strand, within DDA3937_RS01820 at 405.350 kb on + strand, within DDA3937_RS01820 at 405.499 kb on - strand at 405.596 kb on + strand, within DDA3937_RS01825 at 405.727 kb on + strand, within DDA3937_RS01825 at 405.883 kb on + strand at 406.056 kb on + strand at 406.056 kb on + strand at 406.056 kb on + strand at 406.057 kb on - strand at 406.057 kb on - strand at 406.057 kb on - strand at 406.070 kb on + strand at 406.071 kb on - strand at 406.096 kb on + strand at 406.096 kb on + strand at 406.097 kb on - strand at 406.097 kb on - strand at 406.097 kb on - strand at 406.097 kb on - strand at 406.100 kb on + strand at 406.101 kb on - strand at 406.111 kb on + strand at 406.111 kb on + strand at 406.112 kb on - strand at 406.112 kb on - strand at 406.116 kb on - strand at 406.138 kb on + strand, within DDA3937_RS01830 at 406.138 kb on + strand, within DDA3937_RS01830 at 406.175 kb on + strand, within DDA3937_RS01830 at 406.175 kb on + strand, within DDA3937_RS01830 at 406.175 kb on + strand, within DDA3937_RS01830 at 406.176 kb on - strand, within DDA3937_RS01830 at 406.219 kb on + strand, within DDA3937_RS01830 at 406.219 kb on + strand, within DDA3937_RS01830 at 406.220 kb on - strand, within DDA3937_RS01830 at 406.220 kb on - strand, within DDA3937_RS01830 at 406.295 kb on + strand, within DDA3937_RS01830 at 406.296 kb on - strand, within DDA3937_RS01830 at 406.314 kb on - strand, within DDA3937_RS01830 at 406.314 kb on - strand, within DDA3937_RS01830 at 406.359 kb on + strand, within DDA3937_RS01830 at 406.359 kb on + strand, within DDA3937_RS01830 at 406.359 kb on + strand, within DDA3937_RS01830 at 406.359 kb on + strand, within DDA3937_RS01830 at 406.360 kb on - strand, within DDA3937_RS01830 at 406.360 kb on - strand, within DDA3937_RS01830 at 406.360 kb on - strand, within DDA3937_RS01830 at 406.360 kb on - strand, within DDA3937_RS01830 at 406.360 kb on - strand, within DDA3937_RS01830 at 406.387 kb on + strand, within DDA3937_RS01830 at 406.445 kb on + strand, within DDA3937_RS01830 at 406.480 kb on + strand, within DDA3937_RS01830 at 406.480 kb on + strand, within DDA3937_RS01830 at 406.481 kb on - strand, within DDA3937_RS01830 at 406.481 kb on - strand, within DDA3937_RS01830
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 403,668 + DDA3937_RS01815 0.47 +0.8 403,668 + DDA3937_RS01815 0.47 -0.2 403,668 + DDA3937_RS01815 0.47 -0.1 403,669 - DDA3937_RS01815 0.47 -1.7 403,669 - DDA3937_RS01815 0.47 -1.0 403,693 + DDA3937_RS01815 0.49 -0.5 404,134 - DDA3937_RS01815 0.86 -0.8 404,196 - -0.3 404,229 - -1.0 404,313 + -1.0 404,314 - +1.2 404,343 + -0.6 404,344 - +2.0 404,344 - +0.4 404,383 + +3.6 404,384 - -0.0 404,387 + +0.9 404,414 + +0.1 404,414 + -0.6 404,414 + +1.5 404,415 - +0.1 404,441 + +0.2 404,441 + -1.3 404,442 - +1.0 404,448 - +1.0 404,448 - -1.2 404,473 - -1.5 404,476 - +0.5 404,510 + -2.3 404,510 + -1.3 404,527 + -1.1 404,565 + -1.9 404,582 + -1.9 404,582 + -2.4 404,582 + -1.5 404,583 - -3.9 404,583 - -1.3 404,583 - +0.8 404,583 - -1.0 404,586 - -1.9 404,639 + -0.1 404,811 + DDA3937_RS01820 0.19 +0.5 404,811 + DDA3937_RS01820 0.19 -1.8 404,812 - +1.5 404,984 + DDA3937_RS01820 0.39 -0.5 405,227 + DDA3937_RS01820 0.68 -1.3 405,348 + DDA3937_RS01820 0.82 -2.8 405,348 + DDA3937_RS01820 0.82 -2.2 405,348 + DDA3937_RS01820 0.82 -1.0 405,349 - DDA3937_RS01820 0.82 -2.5 405,349 - DDA3937_RS01820 0.82 -1.3 405,350 + DDA3937_RS01820 0.82 +0.2 405,350 + DDA3937_RS01820 0.82 -0.0 405,499 - -1.6 405,596 + DDA3937_RS01825 0.22 -3.0 405,727 + DDA3937_RS01825 0.53 -0.6 405,883 + -4.2 406,056 + -0.1 406,056 + +0.7 406,056 + +0.7 406,057 - +0.0 406,057 - -0.8 406,057 - -0.9 406,070 + -1.6 406,071 - -0.3 406,096 + -0.3 406,096 + -0.6 406,097 - -1.6 406,097 - +0.2 406,097 - -0.3 406,097 - -0.6 406,100 + -1.3 406,101 - -0.7 406,111 + -0.5 406,111 + +0.5 406,112 - +1.0 406,112 - -0.7 406,116 - +0.0 406,138 + DDA3937_RS01830 0.13 -0.7 406,138 + DDA3937_RS01830 0.13 +1.5 406,175 + DDA3937_RS01830 0.18 -0.7 406,175 + DDA3937_RS01830 0.18 +0.9 406,175 + DDA3937_RS01830 0.18 -0.2 406,176 - DDA3937_RS01830 0.19 -2.5 406,219 + DDA3937_RS01830 0.25 -0.6 406,219 + DDA3937_RS01830 0.25 -1.3 406,220 - DDA3937_RS01830 0.25 +1.2 406,220 - DDA3937_RS01830 0.25 -0.4 406,295 + DDA3937_RS01830 0.37 +1.5 406,296 - DDA3937_RS01830 0.37 -0.5 406,314 - DDA3937_RS01830 0.40 -0.2 406,314 - DDA3937_RS01830 0.40 +1.8 406,359 + DDA3937_RS01830 0.47 +1.5 406,359 + DDA3937_RS01830 0.47 +0.2 406,359 + DDA3937_RS01830 0.47 +2.1 406,359 + DDA3937_RS01830 0.47 -0.0 406,360 - DDA3937_RS01830 0.47 -0.5 406,360 - DDA3937_RS01830 0.47 +0.2 406,360 - DDA3937_RS01830 0.47 -1.7 406,360 - DDA3937_RS01830 0.47 +0.5 406,360 - DDA3937_RS01830 0.47 +1.3 406,387 + DDA3937_RS01830 0.51 -0.0 406,445 + DDA3937_RS01830 0.60 +0.2 406,480 + DDA3937_RS01830 0.65 +4.4 406,480 + DDA3937_RS01830 0.65 +0.5 406,481 - DDA3937_RS01830 0.65 -0.3 406,481 - DDA3937_RS01830 0.65 -2.0
Or see this region's nucleotide sequence