Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS01775

Experiment: Upstate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS01765 and DDA3937_RS01770 are separated by 12 nucleotidesDDA3937_RS01770 and DDA3937_RS01775 are separated by 50 nucleotidesDDA3937_RS01775 and DDA3937_RS01780 are separated by 277 nucleotides DDA3937_RS01765: DDA3937_RS01765 - DNA topoisomerase IV subunit B, at 390,060 to 391,955 _RS01765 DDA3937_RS01770: DDA3937_RS01770 - LysR family transcriptional regulator, at 391,968 to 392,864 _RS01770 DDA3937_RS01775: DDA3937_RS01775 - NAD(P)H-dependent oxidoreductase, at 392,915 to 393,496 _RS01775 DDA3937_RS01780: DDA3937_RS01780 - DNA topoisomerase IV subunit A, at 393,774 to 396,050 _RS01780 Position (kb) 392 393 394Strain fitness (log2 ratio) -2 -1 0 1 2at 392.161 kb on + strand, within DDA3937_RS01770at 392.162 kb on - strand, within DDA3937_RS01770at 392.162 kb on - strand, within DDA3937_RS01770at 392.225 kb on - strand, within DDA3937_RS01770at 392.330 kb on + strand, within DDA3937_RS01770at 392.330 kb on + strand, within DDA3937_RS01770at 392.330 kb on + strand, within DDA3937_RS01770at 392.331 kb on - strand, within DDA3937_RS01770at 392.331 kb on - strand, within DDA3937_RS01770at 392.348 kb on + strand, within DDA3937_RS01770at 392.364 kb on - strand, within DDA3937_RS01770at 392.385 kb on - strand, within DDA3937_RS01770at 392.481 kb on + strand, within DDA3937_RS01770at 392.482 kb on - strand, within DDA3937_RS01770at 392.499 kb on - strand, within DDA3937_RS01770at 392.565 kb on - strand, within DDA3937_RS01770at 392.598 kb on + strand, within DDA3937_RS01770at 392.598 kb on + strand, within DDA3937_RS01770at 392.598 kb on + strand, within DDA3937_RS01770at 392.598 kb on + strand, within DDA3937_RS01770at 392.599 kb on - strand, within DDA3937_RS01770at 392.599 kb on - strand, within DDA3937_RS01770at 392.599 kb on - strand, within DDA3937_RS01770at 392.602 kb on - strand, within DDA3937_RS01770at 392.677 kb on + strand, within DDA3937_RS01770at 392.677 kb on + strand, within DDA3937_RS01770at 392.677 kb on + strand, within DDA3937_RS01770at 392.677 kb on + strand, within DDA3937_RS01770at 392.677 kb on + strand, within DDA3937_RS01770at 392.678 kb on - strand, within DDA3937_RS01770at 392.678 kb on - strand, within DDA3937_RS01770at 392.785 kb on - strandat 392.862 kb on + strandat 392.862 kb on + strandat 392.863 kb on - strandat 392.863 kb on - strandat 392.892 kb on - strandat 392.897 kb on - strandat 392.999 kb on - strand, within DDA3937_RS01775at 392.999 kb on - strand, within DDA3937_RS01775at 392.999 kb on - strand, within DDA3937_RS01775at 393.054 kb on + strand, within DDA3937_RS01775at 393.054 kb on + strand, within DDA3937_RS01775at 393.055 kb on - strand, within DDA3937_RS01775at 393.141 kb on + strand, within DDA3937_RS01775at 393.141 kb on + strand, within DDA3937_RS01775at 393.141 kb on + strand, within DDA3937_RS01775at 393.142 kb on - strand, within DDA3937_RS01775at 393.142 kb on - strand, within DDA3937_RS01775at 393.217 kb on - strand, within DDA3937_RS01775at 393.255 kb on + strand, within DDA3937_RS01775at 393.303 kb on + strand, within DDA3937_RS01775at 393.304 kb on - strand, within DDA3937_RS01775at 393.355 kb on - strand, within DDA3937_RS01775at 393.485 kb on + strandat 393.486 kb on - strandat 393.490 kb on + strandat 393.491 kb on - strandat 393.491 kb on - strandat 393.491 kb on - strandat 393.491 kb on - strandat 393.491 kb on - strandat 393.522 kb on + strandat 393.522 kb on + strandat 393.522 kb on + strandat 393.522 kb on + strandat 393.522 kb on + strandat 393.522 kb on + strandat 393.522 kb on + strandat 393.522 kb on + strandat 393.523 kb on - strandat 393.523 kb on - strandat 393.523 kb on - strandat 393.523 kb on - strandat 393.546 kb on - strandat 393.546 kb on - strandat 393.678 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Upstate
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392,161 + DDA3937_RS01770 0.22 -1.4
392,162 - DDA3937_RS01770 0.22 -0.4
392,162 - DDA3937_RS01770 0.22 +0.0
392,225 - DDA3937_RS01770 0.29 +0.6
392,330 + DDA3937_RS01770 0.40 -0.8
392,330 + DDA3937_RS01770 0.40 -0.7
392,330 + DDA3937_RS01770 0.40 -2.7
392,331 - DDA3937_RS01770 0.40 -1.2
392,331 - DDA3937_RS01770 0.40 +0.6
392,348 + DDA3937_RS01770 0.42 -2.0
392,364 - DDA3937_RS01770 0.44 +0.5
392,385 - DDA3937_RS01770 0.46 +1.1
392,481 + DDA3937_RS01770 0.57 -0.3
392,482 - DDA3937_RS01770 0.57 -1.0
392,499 - DDA3937_RS01770 0.59 -0.1
392,565 - DDA3937_RS01770 0.67 -0.3
392,598 + DDA3937_RS01770 0.70 -0.0
392,598 + DDA3937_RS01770 0.70 +0.2
392,598 + DDA3937_RS01770 0.70 +1.1
392,598 + DDA3937_RS01770 0.70 -2.3
392,599 - DDA3937_RS01770 0.70 -0.3
392,599 - DDA3937_RS01770 0.70 -0.5
392,599 - DDA3937_RS01770 0.70 -1.8
392,602 - DDA3937_RS01770 0.71 -0.2
392,677 + DDA3937_RS01770 0.79 -1.0
392,677 + DDA3937_RS01770 0.79 +0.3
392,677 + DDA3937_RS01770 0.79 -2.0
392,677 + DDA3937_RS01770 0.79 +0.1
392,677 + DDA3937_RS01770 0.79 -0.0
392,678 - DDA3937_RS01770 0.79 -2.1
392,678 - DDA3937_RS01770 0.79 +1.9
392,785 - -0.8
392,862 + -1.3
392,862 + -0.5
392,863 - -0.0
392,863 - +2.0
392,892 - -0.2
392,897 - -0.5
392,999 - DDA3937_RS01775 0.14 -1.3
392,999 - DDA3937_RS01775 0.14 -0.0
392,999 - DDA3937_RS01775 0.14 -1.0
393,054 + DDA3937_RS01775 0.24 -1.7
393,054 + DDA3937_RS01775 0.24 -0.6
393,055 - DDA3937_RS01775 0.24 -0.5
393,141 + DDA3937_RS01775 0.39 +0.3
393,141 + DDA3937_RS01775 0.39 -1.2
393,141 + DDA3937_RS01775 0.39 -0.8
393,142 - DDA3937_RS01775 0.39 +0.4
393,142 - DDA3937_RS01775 0.39 -0.4
393,217 - DDA3937_RS01775 0.52 -1.5
393,255 + DDA3937_RS01775 0.58 -1.0
393,303 + DDA3937_RS01775 0.67 +0.3
393,304 - DDA3937_RS01775 0.67 +0.4
393,355 - DDA3937_RS01775 0.76 +1.5
393,485 + -1.2
393,486 - +0.0
393,490 + -1.6
393,491 - -2.3
393,491 - -0.5
393,491 - +0.1
393,491 - -0.1
393,491 - -0.2
393,522 + -2.3
393,522 + -0.6
393,522 + -1.1
393,522 + -0.8
393,522 + -1.3
393,522 + +0.2
393,522 + -0.7
393,522 + +0.4
393,523 - -0.5
393,523 - +1.1
393,523 - -2.4
393,523 - +1.5
393,546 - +0.2
393,546 - -0.3
393,678 + +0.2

Or see this region's nucleotide sequence