Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS01475

Experiment: Upstate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS01465 and DDA3937_RS01470 are separated by 338 nucleotidesDDA3937_RS01470 and DDA3937_RS01475 are separated by 31 nucleotidesDDA3937_RS01475 and DDA3937_RS01480 are separated by 13 nucleotides DDA3937_RS01465: DDA3937_RS01465 - HTH-type transcriptional activator AaeR, at 329,980 to 330,924 _RS01465 DDA3937_RS01470: DDA3937_RS01470 - AaeX family protein, at 331,263 to 331,466 _RS01470 DDA3937_RS01475: DDA3937_RS01475 - p-hydroxybenzoic acid efflux pump subunit AaeA, at 331,498 to 332,421 _RS01475 DDA3937_RS01480: DDA3937_RS01480 - p-hydroxybenzoic acid efflux pump subunit AaeB, at 332,435 to 334,384 _RS01480 Position (kb) 331 332 333Strain fitness (log2 ratio) -2 -1 0 1 2 3at 330.598 kb on - strand, within DDA3937_RS01465at 330.625 kb on - strand, within DDA3937_RS01465at 330.674 kb on + strand, within DDA3937_RS01465at 330.674 kb on + strand, within DDA3937_RS01465at 330.674 kb on + strand, within DDA3937_RS01465at 330.674 kb on + strand, within DDA3937_RS01465at 330.674 kb on + strand, within DDA3937_RS01465at 330.674 kb on + strand, within DDA3937_RS01465at 330.674 kb on + strand, within DDA3937_RS01465at 330.674 kb on + strand, within DDA3937_RS01465at 330.674 kb on + strand, within DDA3937_RS01465at 330.675 kb on - strand, within DDA3937_RS01465at 330.675 kb on - strand, within DDA3937_RS01465at 330.675 kb on - strand, within DDA3937_RS01465at 330.676 kb on + strand, within DDA3937_RS01465at 330.676 kb on + strandat 330.676 kb on + strand, within DDA3937_RS01465at 330.676 kb on + strandat 330.676 kb on + strand, within DDA3937_RS01465at 330.677 kb on - strand, within DDA3937_RS01465at 330.677 kb on - strand, within DDA3937_RS01465at 330.677 kb on - strand, within DDA3937_RS01465at 330.677 kb on - strand, within DDA3937_RS01465at 330.677 kb on - strand, within DDA3937_RS01465at 330.677 kb on - strand, within DDA3937_RS01465at 330.677 kb on - strand, within DDA3937_RS01465at 330.677 kb on - strand, within DDA3937_RS01465at 330.677 kb on - strand, within DDA3937_RS01465at 330.677 kb on - strand, within DDA3937_RS01465at 330.728 kb on + strand, within DDA3937_RS01465at 330.731 kb on + strand, within DDA3937_RS01465at 330.732 kb on - strand, within DDA3937_RS01465at 330.762 kb on + strand, within DDA3937_RS01465at 330.763 kb on - strand, within DDA3937_RS01465at 330.969 kb on - strandat 330.976 kb on + strandat 330.989 kb on + strandat 330.993 kb on - strandat 330.995 kb on - strandat 330.995 kb on - strandat 331.091 kb on + strandat 331.092 kb on - strandat 331.096 kb on - strandat 331.096 kb on - strandat 331.099 kb on - strandat 331.122 kb on + strandat 331.122 kb on + strandat 331.123 kb on - strandat 331.123 kb on - strandat 331.123 kb on - strandat 331.181 kb on + strandat 331.182 kb on - strandat 331.250 kb on + strandat 331.349 kb on + strand, within DDA3937_RS01470at 331.349 kb on + strand, within DDA3937_RS01470at 331.383 kb on + strand, within DDA3937_RS01470at 331.384 kb on - strand, within DDA3937_RS01470at 331.412 kb on + strand, within DDA3937_RS01470at 331.413 kb on - strand, within DDA3937_RS01470at 331.413 kb on - strand, within DDA3937_RS01470at 331.413 kb on - strand, within DDA3937_RS01470at 331.413 kb on - strand, within DDA3937_RS01470at 331.440 kb on + strand, within DDA3937_RS01470at 331.440 kb on + strand, within DDA3937_RS01470at 331.440 kb on + strand, within DDA3937_RS01470at 331.532 kb on + strandat 331.532 kb on + strandat 331.571 kb on + strandat 331.571 kb on + strandat 331.582 kb on + strandat 331.583 kb on - strandat 331.774 kb on + strand, within DDA3937_RS01475at 331.774 kb on + strand, within DDA3937_RS01475at 331.774 kb on + strand, within DDA3937_RS01475at 331.774 kb on + strand, within DDA3937_RS01475at 331.775 kb on - strand, within DDA3937_RS01475at 331.775 kb on - strand, within DDA3937_RS01475at 331.775 kb on - strand, within DDA3937_RS01475at 331.777 kb on + strand, within DDA3937_RS01475at 331.777 kb on + strand, within DDA3937_RS01475at 331.951 kb on - strand, within DDA3937_RS01475at 331.951 kb on - strand, within DDA3937_RS01475at 332.011 kb on + strand, within DDA3937_RS01475at 332.011 kb on + strand, within DDA3937_RS01475at 332.012 kb on - strand, within DDA3937_RS01475at 332.063 kb on - strand, within DDA3937_RS01475at 332.074 kb on + strand, within DDA3937_RS01475at 332.074 kb on + strand, within DDA3937_RS01475at 332.075 kb on - strand, within DDA3937_RS01475at 332.075 kb on - strand, within DDA3937_RS01475at 332.075 kb on - strand, within DDA3937_RS01475at 332.075 kb on - strand, within DDA3937_RS01475at 332.075 kb on - strand, within DDA3937_RS01475at 332.075 kb on - strand, within DDA3937_RS01475at 332.076 kb on + strand, within DDA3937_RS01475at 332.077 kb on - strand, within DDA3937_RS01475at 332.169 kb on + strand, within DDA3937_RS01475at 332.199 kb on + strand, within DDA3937_RS01475at 332.199 kb on + strand, within DDA3937_RS01475at 332.200 kb on - strandat 332.200 kb on - strand, within DDA3937_RS01475at 332.200 kb on - strand, within DDA3937_RS01475at 332.200 kb on - strand, within DDA3937_RS01475at 332.200 kb on - strand, within DDA3937_RS01475at 332.276 kb on + strand, within DDA3937_RS01475at 332.355 kb on + strandat 332.355 kb on + strandat 332.431 kb on + strandat 332.431 kb on + strandat 332.431 kb on + strandat 332.431 kb on + strandat 332.431 kb on + strandat 332.431 kb on + strandat 332.482 kb on + strandat 332.482 kb on + strandat 332.483 kb on - strandat 332.766 kb on + strand, within DDA3937_RS01480at 332.783 kb on + strand, within DDA3937_RS01480at 332.783 kb on + strandat 332.784 kb on - strand, within DDA3937_RS01480at 332.784 kb on - strand, within DDA3937_RS01480at 332.944 kb on - strand, within DDA3937_RS01480at 332.990 kb on + strand, within DDA3937_RS01480at 332.991 kb on - strand, within DDA3937_RS01480at 333.065 kb on - strand, within DDA3937_RS01480at 333.096 kb on + strand, within DDA3937_RS01480at 333.096 kb on + strand, within DDA3937_RS01480at 333.241 kb on + strand, within DDA3937_RS01480at 333.241 kb on + strand, within DDA3937_RS01480at 333.241 kb on + strand, within DDA3937_RS01480at 333.241 kb on + strand, within DDA3937_RS01480at 333.242 kb on - strand, within DDA3937_RS01480at 333.242 kb on - strand, within DDA3937_RS01480at 333.242 kb on - strandat 333.242 kb on - strand, within DDA3937_RS01480

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Per-strain Table

Position Strand Gene LocusTag Fraction Upstate
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330,598 - DDA3937_RS01465 0.65 -1.3
330,625 - DDA3937_RS01465 0.68 +0.1
330,674 + DDA3937_RS01465 0.73 -0.1
330,674 + DDA3937_RS01465 0.73 +0.4
330,674 + DDA3937_RS01465 0.73 -1.5
330,674 + DDA3937_RS01465 0.73 -0.2
330,674 + DDA3937_RS01465 0.73 -0.4
330,674 + DDA3937_RS01465 0.73 -0.7
330,674 + DDA3937_RS01465 0.73 -1.0
330,674 + DDA3937_RS01465 0.73 +1.6
330,674 + DDA3937_RS01465 0.73 -1.0
330,675 - DDA3937_RS01465 0.74 -0.6
330,675 - DDA3937_RS01465 0.74 +0.4
330,675 - DDA3937_RS01465 0.74 +0.6
330,676 + DDA3937_RS01465 0.74 -0.4
330,676 + +0.8
330,676 + DDA3937_RS01465 0.74 +0.7
330,676 + +2.6
330,676 + DDA3937_RS01465 0.74 -0.5
330,677 - DDA3937_RS01465 0.74 -0.1
330,677 - DDA3937_RS01465 0.74 -0.3
330,677 - DDA3937_RS01465 0.74 +3.0
330,677 - DDA3937_RS01465 0.74 -0.6
330,677 - DDA3937_RS01465 0.74 -0.2
330,677 - DDA3937_RS01465 0.74 +0.3
330,677 - DDA3937_RS01465 0.74 -0.3
330,677 - DDA3937_RS01465 0.74 -1.1
330,677 - DDA3937_RS01465 0.74 +0.1
330,677 - DDA3937_RS01465 0.74 -1.5
330,728 + DDA3937_RS01465 0.79 +1.3
330,731 + DDA3937_RS01465 0.79 -0.2
330,732 - DDA3937_RS01465 0.80 +0.8
330,762 + DDA3937_RS01465 0.83 -1.0
330,763 - DDA3937_RS01465 0.83 -0.9
330,969 - -0.3
330,976 + -0.7
330,989 + -0.7
330,993 - -0.5
330,995 - -1.0
330,995 - +1.0
331,091 + -2.7
331,092 - -0.7
331,096 - -1.6
331,096 - -0.8
331,099 - +0.8
331,122 + +2.8
331,122 + -0.0
331,123 - +0.5
331,123 - -0.0
331,123 - -0.4
331,181 + -0.5
331,182 - +0.5
331,250 + -1.6
331,349 + DDA3937_RS01470 0.42 -0.6
331,349 + DDA3937_RS01470 0.42 +0.8
331,383 + DDA3937_RS01470 0.59 +0.2
331,384 - DDA3937_RS01470 0.59 +1.3
331,412 + DDA3937_RS01470 0.73 +0.2
331,413 - DDA3937_RS01470 0.74 -1.3
331,413 - DDA3937_RS01470 0.74 +1.3
331,413 - DDA3937_RS01470 0.74 +0.3
331,413 - DDA3937_RS01470 0.74 -0.8
331,440 + DDA3937_RS01470 0.87 -1.5
331,440 + DDA3937_RS01470 0.87 -1.4
331,440 + DDA3937_RS01470 0.87 -1.3
331,532 + -1.1
331,532 + +0.2
331,571 + +0.1
331,571 + -0.7
331,582 + -1.0
331,583 - +0.3
331,774 + DDA3937_RS01475 0.30 -0.9
331,774 + DDA3937_RS01475 0.30 +0.5
331,774 + DDA3937_RS01475 0.30 -0.6
331,774 + DDA3937_RS01475 0.30 -2.5
331,775 - DDA3937_RS01475 0.30 -0.0
331,775 - DDA3937_RS01475 0.30 -0.3
331,775 - DDA3937_RS01475 0.30 -0.3
331,777 + DDA3937_RS01475 0.30 -0.4
331,777 + DDA3937_RS01475 0.30 +0.2
331,951 - DDA3937_RS01475 0.49 -0.0
331,951 - DDA3937_RS01475 0.49 +0.5
332,011 + DDA3937_RS01475 0.56 -0.5
332,011 + DDA3937_RS01475 0.56 -0.1
332,012 - DDA3937_RS01475 0.56 -0.3
332,063 - DDA3937_RS01475 0.61 -0.7
332,074 + DDA3937_RS01475 0.62 -0.9
332,074 + DDA3937_RS01475 0.62 -0.5
332,075 - DDA3937_RS01475 0.62 -0.8
332,075 - DDA3937_RS01475 0.62 -2.0
332,075 - DDA3937_RS01475 0.62 +0.2
332,075 - DDA3937_RS01475 0.62 -0.0
332,075 - DDA3937_RS01475 0.62 +0.8
332,075 - DDA3937_RS01475 0.62 +0.1
332,076 + DDA3937_RS01475 0.63 -0.2
332,077 - DDA3937_RS01475 0.63 -0.8
332,169 + DDA3937_RS01475 0.73 -2.5
332,199 + DDA3937_RS01475 0.76 -0.8
332,199 + DDA3937_RS01475 0.76 +1.0
332,200 - +0.5
332,200 - DDA3937_RS01475 0.76 +0.3
332,200 - DDA3937_RS01475 0.76 +0.1
332,200 - DDA3937_RS01475 0.76 -0.6
332,200 - DDA3937_RS01475 0.76 -0.0
332,276 + DDA3937_RS01475 0.84 -1.4
332,355 + -0.0
332,355 + -0.2
332,431 + -0.0
332,431 + -0.7
332,431 + +0.4
332,431 + -0.1
332,431 + -2.0
332,431 + +0.2
332,482 + +2.0
332,482 + -0.5
332,483 - -0.7
332,766 + DDA3937_RS01480 0.17 -1.3
332,783 + DDA3937_RS01480 0.18 -0.3
332,783 + +1.5
332,784 - DDA3937_RS01480 0.18 -0.5
332,784 - DDA3937_RS01480 0.18 +1.5
332,944 - DDA3937_RS01480 0.26 -1.3
332,990 + DDA3937_RS01480 0.28 -0.5
332,991 - DDA3937_RS01480 0.29 -0.4
333,065 - DDA3937_RS01480 0.32 +0.1
333,096 + DDA3937_RS01480 0.34 -0.5
333,096 + DDA3937_RS01480 0.34 -0.5
333,241 + DDA3937_RS01480 0.41 +1.4
333,241 + DDA3937_RS01480 0.41 -0.1
333,241 + DDA3937_RS01480 0.41 -1.0
333,241 + DDA3937_RS01480 0.41 -0.2
333,242 - DDA3937_RS01480 0.41 -0.2
333,242 - DDA3937_RS01480 0.41 -1.5
333,242 - +1.5
333,242 - DDA3937_RS01480 0.41 -1.0

Or see this region's nucleotide sequence