Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS01030

Experiment: Upstate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS01025 and DDA3937_RS01030 overlap by 4 nucleotidesDDA3937_RS01030 and DDA3937_RS01035 are separated by 23 nucleotides DDA3937_RS01025: DDA3937_RS01025 - UDP-N-acetylmuramate dehydrogenase, at 237,119 to 238,156 _RS01025 DDA3937_RS01030: DDA3937_RS01030 - bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA, at 238,153 to 239,112 _RS01030 DDA3937_RS01035: DDA3937_RS01035 - type I pantothenate kinase, at 239,136 to 240,086 _RS01035 Position (kb) 238 239 240Strain fitness (log2 ratio) -2 -1 0 1at 239.110 kb on + strandat 239.110 kb on + strandat 239.111 kb on - strandat 240.087 kb on - strandat 240.087 kb on - strandat 240.091 kb on - strandat 240.091 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Upstate
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239,110 + -1.0
239,110 + -1.4
239,111 - -2.4
240,087 - +0.4
240,087 - -1.0
240,091 - +0.2
240,091 - -0.3

Or see this region's nucleotide sequence