Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS00995

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
227,789	+		DDA3937_RS00990	0.47	+0.1
227,836	+		DDA3937_RS00990	0.51	+6.3
227,837	-		DDA3937_RS00990	0.51	+0.2
227,837	-		DDA3937_RS00990	0.51	+0.8
227,878	+		DDA3937_RS00990	0.55	+1.0
227,878	+		DDA3937_RS00990	0.55	-2.0
227,878	+		DDA3937_RS00990	0.55	+0.6
227,878	+		DDA3937_RS00990	0.55	-3.1
227,878	+		DDA3937_RS00990	0.55	+1.0
227,879	-		DDA3937_RS00990	0.55	+0.1
227,879	-		DDA3937_RS00990	0.55	+1.0
227,879	-		DDA3937_RS00990	0.55	+0.1
227,929	-		DDA3937_RS00990	0.59	-0.0
228,007	+		DDA3937_RS00990	0.66	-0.5
228,007	+		DDA3937_RS00990	0.66	+0.2
228,008	-		DDA3937_RS00990	0.66	+0.1
228,008	-		DDA3937_RS00990	0.66	-2.1
228,008	-		DDA3937_RS00990	0.66	+0.3
228,049	+		DDA3937_RS00990	0.70	-0.5
228,049	+		DDA3937_RS00990	0.70	+0.6
228,049	+		DDA3937_RS00990	0.70	-0.0
228,050	-		DDA3937_RS00990	0.70	+0.7
228,050	-		DDA3937_RS00990	0.70	-0.8
228,050	-		DDA3937_RS00990	0.70	-2.2
228,191	+		DDA3937_RS00990	0.83	-1.4
228,191	+		DDA3937_RS00990	0.83	-1.1
228,199	+		DDA3937_RS00990	0.84	+0.2
228,346	+				-1.2
228,390	+				-0.4
228,390	+				-0.2
228,391	-				+0.9
228,435	+				+0.2
228,436	-				-0.0
228,521	-				+0.2
228,521	-				-0.6
228,521	-				+1.1
228,612	+				+1.0
228,613	-				-0.8
228,617	+				-0.4
228,617	+				+0.6
228,617	+				+0.9
228,617	+				+0.7
228,617	+				-1.3
228,618	-				+1.3
228,618	-				-0.2
228,706	-				+1.2
228,782	+				-2.1
228,782	+				-0.5
228,782	+				+1.6
228,782	+				-1.6
228,782	+				-1.0
228,782	+				+0.0
228,782	+				-1.5
228,782	+				-0.0
228,782	+				-1.6
228,782	+				-1.2
228,782	+				-1.0
228,783	-				-0.1
228,783	-				-1.0
228,783	-				-0.4
228,783	-				-0.6
228,783	-				-3.0
228,783	-				+0.9
228,783	-				-0.3
228,783	-				-0.3
228,783	-				-0.4
228,784	+				-1.2
228,784	+				-0.7
228,784	+				+0.8
228,784	+				+1.2
228,785	-				-0.8
228,785	-				-0.1
228,823	+				-0.1
228,823	+				-0.0
228,932	-				-0.4
228,966	-				-0.3
229,063	+				-0.0
229,063	+		DDA3937_RS00995	0.15	-0.4
229,063	+		DDA3937_RS00995	0.15	-1.1
229,063	+		DDA3937_RS00995	0.15	+0.0
229,063	+		DDA3937_RS00995	0.15	-1.8
229,063	+		DDA3937_RS00995	0.15	-1.1
229,064	-		DDA3937_RS00995	0.15	-1.4
229,067	+		DDA3937_RS00995	0.15	-1.2
229,067	+		DDA3937_RS00995	0.15	-2.2
229,068	-		DDA3937_RS00995	0.15	-1.8
229,091	+		DDA3937_RS00995	0.16	-1.6
229,092	-		DDA3937_RS00995	0.16	-0.9
229,092	-		DDA3937_RS00995	0.16	-1.3
229,099	+		DDA3937_RS00995	0.17	-1.0
229,100	-		DDA3937_RS00995	0.17	-0.3
229,113	-		DDA3937_RS00995	0.17	+0.8
229,118	+		DDA3937_RS00995	0.18	-1.0
229,118	+		DDA3937_RS00995	0.18	-1.3
229,119	-		DDA3937_RS00995	0.18	+0.1
229,172	+		DDA3937_RS00995	0.21	-0.0
229,172	+		DDA3937_RS00995	0.21	+0.1
229,172	+		DDA3937_RS00995	0.21	-2.0
229,172	+		DDA3937_RS00995	0.21	-2.0
229,172	+		DDA3937_RS00995	0.21	+0.1
229,172	+		DDA3937_RS00995	0.21	+0.2
229,172	+		DDA3937_RS00995	0.21	-0.4
229,173	-		DDA3937_RS00995	0.21	-1.0
229,173	-		DDA3937_RS00995	0.21	-1.6
229,173	-		DDA3937_RS00995	0.21	-0.2
229,173	-		DDA3937_RS00995	0.21	-1.7
229,173	-		DDA3937_RS00995	0.21	+0.8
229,173	-		DDA3937_RS00995	0.21	-0.8
229,173	-		DDA3937_RS00995	0.21	-1.8
229,191	+		DDA3937_RS00995	0.22	+0.1
229,191	+		DDA3937_RS00995	0.22	+0.6
229,191	+		DDA3937_RS00995	0.22	-2.3
229,192	-		DDA3937_RS00995	0.22	+0.8
229,218	+		DDA3937_RS00995	0.23	+0.1
229,253	+		DDA3937_RS00995	0.25	-0.6
229,253	+		DDA3937_RS00995	0.25	-0.8
229,253	+		DDA3937_RS00995	0.25	-0.8
229,253	+				+1.0
229,253	+		DDA3937_RS00995	0.25	-1.2
229,253	+		DDA3937_RS00995	0.25	-0.5
229,253	+		DDA3937_RS00995	0.25	+0.1
229,254	-		DDA3937_RS00995	0.25	-0.4
229,254	-		DDA3937_RS00995	0.25	+0.6
229,254	-		DDA3937_RS00995	0.25	-0.2
229,254	-		DDA3937_RS00995	0.25	+4.3
229,254	-		DDA3937_RS00995	0.25	-0.0
229,256	+		DDA3937_RS00995	0.25	-1.1
229,256	+		DDA3937_RS00995	0.25	-0.7
229,256	+		DDA3937_RS00995	0.25	-2.4
229,256	+		DDA3937_RS00995	0.25	-0.4
229,256	+		DDA3937_RS00995	0.25	-0.7
229,257	-		DDA3937_RS00995	0.25	-0.5
229,257	-		DDA3937_RS00995	0.25	-0.1
229,260	-		DDA3937_RS00995	0.25	+1.8
229,282	+		DDA3937_RS00995	0.26	-0.0
229,285	+		DDA3937_RS00995	0.27	-0.8
229,285	+		DDA3937_RS00995	0.27	-1.4
229,285	+		DDA3937_RS00995	0.27	-0.4
229,286	-		DDA3937_RS00995	0.27	+0.6
229,286	-		DDA3937_RS00995	0.27	-0.4
229,296	+		DDA3937_RS00995	0.27	+2.9
229,296	+		DDA3937_RS00995	0.27	-0.1
229,320	+		DDA3937_RS00995	0.29	-0.8
229,320	+		DDA3937_RS00995	0.29	+1.1
229,320	+		DDA3937_RS00995	0.29	-2.6
229,321	-		DDA3937_RS00995	0.29	-1.4
229,321	-		DDA3937_RS00995	0.29	-1.5
229,334	+		DDA3937_RS00995	0.29	-0.0
229,343	+		DDA3937_RS00995	0.30	-1.4
229,344	-		DDA3937_RS00995	0.30	-0.6
229,344	-		DDA3937_RS00995	0.30	-0.6
229,344	-		DDA3937_RS00995	0.30	-1.8
229,363	+		DDA3937_RS00995	0.31	-1.0
229,363	+		DDA3937_RS00995	0.31	+0.6
229,363	+		DDA3937_RS00995	0.31	-0.6
229,388	+		DDA3937_RS00995	0.32	+0.6
229,388	+		DDA3937_RS00995	0.32	-1.3
229,389	-		DDA3937_RS00995	0.32	-0.6
229,389	-				+0.6
229,400	+		DDA3937_RS00995	0.33	-1.2
229,400	+		DDA3937_RS00995	0.33	+0.2
229,451	+		DDA3937_RS00995	0.36	+0.3
229,452	-		DDA3937_RS00995	0.36	-0.0
229,452	-		DDA3937_RS00995	0.36	-0.2
229,452	-		DDA3937_RS00995	0.36	-1.2
229,490	+		DDA3937_RS00995	0.38	+0.3
229,490	+		DDA3937_RS00995	0.38	-0.2
229,501	+		DDA3937_RS00995	0.38	-1.5
229,501	+				+2.4
229,521	+		DDA3937_RS00995	0.39	+1.0
229,521	+		DDA3937_RS00995	0.39	-1.9
229,521	+		DDA3937_RS00995	0.39	+0.1
229,521	+		DDA3937_RS00995	0.39	+1.6
229,521	+		DDA3937_RS00995	0.39	-0.2
229,522	-		DDA3937_RS00995	0.39	-2.6
229,522	-		DDA3937_RS00995	0.39	+0.9
229,545	+		DDA3937_RS00995	0.41	-0.9
229,546	-		DDA3937_RS00995	0.41	+0.2
229,557	+		DDA3937_RS00995	0.41	-0.8
229,560	-		DDA3937_RS00995	0.41	-3.3
229,598	+		DDA3937_RS00995	0.43	-0.7
229,598	+		DDA3937_RS00995	0.43	-0.7
229,599	-		DDA3937_RS00995	0.43	-0.6
229,599	-		DDA3937_RS00995	0.43	-1.5
229,602	+		DDA3937_RS00995	0.44	+1.0
229,602	+		DDA3937_RS00995	0.44	+0.2
229,602	+		DDA3937_RS00995	0.44	-0.1
229,602	+		DDA3937_RS00995	0.44	-1.1
229,602	+		DDA3937_RS00995	0.44	-0.5
229,602	+		DDA3937_RS00995	0.44	-1.0
229,603	-		DDA3937_RS00995	0.44	+0.8
229,603	-		DDA3937_RS00995	0.44	-1.2
229,603	-		DDA3937_RS00995	0.44	+0.1
229,603	-		DDA3937_RS00995	0.44	-0.1
229,603	-		DDA3937_RS00995	0.44	-0.6
229,635	+		DDA3937_RS00995	0.45	-0.9
229,636	-				-1.2
229,655	+				-0.0
229,655	+		DDA3937_RS00995	0.46	-0.7
229,655	+		DDA3937_RS00995	0.46	+1.3
229,656	-		DDA3937_RS00995	0.46	-1.6
229,656	-		DDA3937_RS00995	0.46	-0.6
229,656	-		DDA3937_RS00995	0.46	-0.5
229,659	+		DDA3937_RS00995	0.47	-1.0
229,660	-		DDA3937_RS00995	0.47	-0.3
229,668	+				-0.4
229,668	+		DDA3937_RS00995	0.47	-1.8
229,668	+		DDA3937_RS00995	0.47	-0.4
229,668	+		DDA3937_RS00995	0.47	+0.3
229,668	+		DDA3937_RS00995	0.47	+0.4
229,668	+		DDA3937_RS00995	0.47	-0.3
229,668	+		DDA3937_RS00995	0.47	+0.2
229,668	+		DDA3937_RS00995	0.47	-0.4
229,669	-		DDA3937_RS00995	0.47	-0.4
229,669	-		DDA3937_RS00995	0.47	-0.0
229,669	-		DDA3937_RS00995	0.47	-1.0
229,669	-		DDA3937_RS00995	0.47	-1.1
229,684	-		DDA3937_RS00995	0.48	+0.6
229,727	+		DDA3937_RS00995	0.50	+0.5
229,728	-		DDA3937_RS00995	0.50	-1.4
229,757	-		DDA3937_RS00995	0.52	+0.1
229,757	-		DDA3937_RS00995	0.52	-0.5
229,775	+		DDA3937_RS00995	0.53	+1.2
229,775	+		DDA3937_RS00995	0.53	+0.3
229,775	+		DDA3937_RS00995	0.53	+0.9
229,776	-		DDA3937_RS00995	0.53	+0.6
229,776	-		DDA3937_RS00995	0.53	+0.8
229,776	-		DDA3937_RS00995	0.53	-0.3
229,778	+		DDA3937_RS00995	0.53	-0.4
229,778	+		DDA3937_RS00995	0.53	+0.3
229,778	+		DDA3937_RS00995	0.53	-1.3
229,779	-		DDA3937_RS00995	0.53	+0.4
229,779	-		DDA3937_RS00995	0.53	+1.6
229,862	+		DDA3937_RS00995	0.57	-1.0
229,863	-		DDA3937_RS00995	0.58	-1.0
229,870	+		DDA3937_RS00995	0.58	-1.0
229,870	+		DDA3937_RS00995	0.58	-0.2
229,871	-		DDA3937_RS00995	0.58	-0.8
229,872	+		DDA3937_RS00995	0.58	-0.6
229,873	-		DDA3937_RS00995	0.58	+0.4
229,873	-		DDA3937_RS00995	0.58	-1.2
229,873	-		DDA3937_RS00995	0.58	-1.5
229,873	-		DDA3937_RS00995	0.58	-0.8
229,873	-		DDA3937_RS00995	0.58	-0.3
229,873	-		DDA3937_RS00995	0.58	-0.3
229,892	+		DDA3937_RS00995	0.59	+0.9
229,892	+		DDA3937_RS00995	0.59	-0.6
229,892	+		DDA3937_RS00995	0.59	-0.0
229,892	+		DDA3937_RS00995	0.59	-0.9
229,893	-		DDA3937_RS00995	0.59	-0.0
229,893	-		DDA3937_RS00995	0.59	-1.1
229,893	-		DDA3937_RS00995	0.59	-0.4
229,893	-		DDA3937_RS00995	0.59	-0.8
230,016	+		DDA3937_RS00995	0.66	+0.7
230,016	+		DDA3937_RS00995	0.66	-1.8
230,016	+		DDA3937_RS00995	0.66	-0.9
230,017	-		DDA3937_RS00995	0.66	-1.4
230,017	-		DDA3937_RS00995	0.66	-2.0
230,017	-		DDA3937_RS00995	0.66	+0.8
230,017	-		DDA3937_RS00995	0.66	-0.9
230,017	-		DDA3937_RS00995	0.66	-0.4
230,030	+		DDA3937_RS00995	0.66	+1.0
230,030	+		DDA3937_RS00995	0.66	-0.5
230,030	+		DDA3937_RS00995	0.66	-0.6
230,055	+		DDA3937_RS00995	0.68	-0.2
230,055	+		DDA3937_RS00995	0.68	-0.5
230,055	+		DDA3937_RS00995	0.68	-1.2
230,056	-		DDA3937_RS00995	0.68	-0.1
230,056	-		DDA3937_RS00995	0.68	-1.5
230,056	-		DDA3937_RS00995	0.68	-0.2
230,057	+		DDA3937_RS00995	0.68	-0.5
230,057	+		DDA3937_RS00995	0.68	-0.8
230,058	-				+1.3
230,058	-		DDA3937_RS00995	0.68	-1.1
230,058	-		DDA3937_RS00995	0.68	-0.7
230,060	+		DDA3937_RS00995	0.68	-0.4
230,060	+		DDA3937_RS00995	0.68	-0.4
230,060	+		DDA3937_RS00995	0.68	-0.0
230,060	+		DDA3937_RS00995	0.68	+0.4
230,060	+		DDA3937_RS00995	0.68	+0.3
230,060	+		DDA3937_RS00995	0.68	+1.1
230,061	-		DDA3937_RS00995	0.68	+0.2
230,061	-		DDA3937_RS00995	0.68	-1.3
230,067	+		DDA3937_RS00995	0.68	+0.1
230,067	+		DDA3937_RS00995	0.68	+0.5
230,067	+		DDA3937_RS00995	0.68	-0.0
230,068	-		DDA3937_RS00995	0.68	+0.6
230,068	-		DDA3937_RS00995	0.68	+0.3
230,068	-		DDA3937_RS00995	0.68	+0.2
230,068	-		DDA3937_RS00995	0.68	+0.3
230,105	+		DDA3937_RS00995	0.70	-0.2
230,106	-				-0.0
230,106	-		DDA3937_RS00995	0.71	+0.4
230,106	-		DDA3937_RS00995	0.71	+0.3
230,106	-		DDA3937_RS00995	0.71	-0.2
230,106	-				+0.6
230,167	-		DDA3937_RS00995	0.74	+0.6
230,183	+		DDA3937_RS00995	0.75	-1.0
230,183	+		DDA3937_RS00995	0.75	+0.9
230,188	+		DDA3937_RS00995	0.75	+1.6
230,188	+		DDA3937_RS00995	0.75	+0.4
230,188	+		DDA3937_RS00995	0.75	+1.0
230,189	-		DDA3937_RS00995	0.75	-0.3
230,189	-		DDA3937_RS00995	0.75	-1.2
230,196	+		DDA3937_RS00995	0.75	-2.2
230,229	+		DDA3937_RS00995	0.77	-0.2
230,230	-		DDA3937_RS00995	0.77	-0.1
230,234	+		DDA3937_RS00995	0.77	-0.8
230,235	-		DDA3937_RS00995	0.77	+0.7
230,252	-		DDA3937_RS00995	0.78	+0.8
230,252	-		DDA3937_RS00995	0.78	-0.1
230,271	-		DDA3937_RS00995	0.79	-0.0
230,280	+		DDA3937_RS00995	0.80	-0.7
230,280	+		DDA3937_RS00995	0.80	+0.2
230,280	+		DDA3937_RS00995	0.80	-2.5
230,280	+		DDA3937_RS00995	0.80	-0.5
230,280	+		DDA3937_RS00995	0.80	-0.0
230,296	+		DDA3937_RS00995	0.81	+0.6
230,296	+		DDA3937_RS00995	0.81	-1.6
230,297	-		DDA3937_RS00995	0.81	+1.2
230,319	+		DDA3937_RS00995	0.82	-0.1
230,364	-				+1.6
230,372	+		DDA3937_RS00995	0.85	+0.4
230,372	+		DDA3937_RS00995	0.85	-1.5
230,372	+		DDA3937_RS00995	0.85	-0.5
230,372	+		DDA3937_RS00995	0.85	-0.1
230,372	+		DDA3937_RS00995	0.85	+0.6
230,372	+		DDA3937_RS00995	0.85	-1.6
230,372	+		DDA3937_RS00995	0.85	-1.6
230,373	-		DDA3937_RS00995	0.85	+0.9
230,373	-		DDA3937_RS00995	0.85	-0.4
230,373	-		DDA3937_RS00995	0.85	-0.1
230,373	-		DDA3937_RS00995	0.85	-0.1
230,373	-		DDA3937_RS00995	0.85	+0.2
230,373	-		DDA3937_RS00995	0.85	+0.1
230,373	-		DDA3937_RS00995	0.85	-2.7
230,373	-		DDA3937_RS00995	0.85	+0.4
230,373	-		DDA3937_RS00995	0.85	+0.9
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