Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS00425 and DDA3937_RS00430 are separated by 303 nucleotides DDA3937_RS00430 and DDA3937_RS00435 are separated by 150 nucleotides DDA3937_RS00435 and DDA3937_RS00440 are separated by 674 nucleotides
DDA3937_RS00425: DDA3937_RS00425 - YceK/YidQ family lipoprotein, at 100,071 to 100,439
_RS00425
DDA3937_RS00430: DDA3937_RS00430 - heat shock chaperone IbpA, at 100,743 to 101,156
_RS00430
DDA3937_RS00435: DDA3937_RS00435 - heat shock chaperone IbpB, at 101,307 to 101,756
_RS00435
DDA3937_RS00440: DDA3937_RS00440 - anion permease, at 102,431 to 103,843
_RS00440
Position (kb) 101
102 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 100.327 kb on + strand at 100.328 kb on - strand, within DDA3937_RS00425 at 100.328 kb on - strand, within DDA3937_RS00425 at 100.364 kb on + strand, within DDA3937_RS00425 at 100.365 kb on - strand, within DDA3937_RS00425 at 100.365 kb on - strand, within DDA3937_RS00425 at 100.365 kb on - strand, within DDA3937_RS00425 at 100.446 kb on - strand at 100.487 kb on + strand at 100.487 kb on + strand at 100.487 kb on + strand at 100.487 kb on + strand at 100.488 kb on - strand at 100.488 kb on - strand at 100.488 kb on - strand at 100.488 kb on - strand at 100.501 kb on + strand at 100.501 kb on + strand at 100.501 kb on + strand at 100.502 kb on - strand at 100.502 kb on - strand at 100.502 kb on - strand at 100.502 kb on - strand at 100.502 kb on - strand at 100.551 kb on + strand at 100.551 kb on + strand at 100.551 kb on + strand at 100.551 kb on + strand at 100.552 kb on - strand at 100.552 kb on - strand at 100.552 kb on - strand at 100.552 kb on - strand at 100.552 kb on - strand at 100.552 kb on - strand at 100.552 kb on - strand at 100.552 kb on - strand at 100.552 kb on - strand at 100.552 kb on - strand at 100.552 kb on - strand at 100.559 kb on + strand at 100.559 kb on + strand at 100.559 kb on + strand at 100.559 kb on + strand at 100.560 kb on - strand at 100.560 kb on - strand at 100.560 kb on - strand at 100.628 kb on + strand at 100.628 kb on + strand at 100.628 kb on + strand at 100.628 kb on + strand at 100.628 kb on + strand at 100.629 kb on - strand at 100.629 kb on - strand at 100.629 kb on - strand at 100.635 kb on + strand at 100.635 kb on + strand at 100.666 kb on + strand at 100.666 kb on + strand at 100.667 kb on - strand at 100.667 kb on - strand at 100.730 kb on + strand at 100.730 kb on + strand at 100.731 kb on - strand at 100.731 kb on - strand at 100.742 kb on + strand at 100.742 kb on + strand at 100.770 kb on + strand at 100.770 kb on + strand at 100.771 kb on - strand at 100.771 kb on - strand at 100.802 kb on + strand, within DDA3937_RS00430 at 100.851 kb on + strand, within DDA3937_RS00430 at 100.852 kb on - strand, within DDA3937_RS00430 at 100.852 kb on - strand, within DDA3937_RS00430 at 100.853 kb on + strand, within DDA3937_RS00430 at 100.995 kb on + strand, within DDA3937_RS00430 at 100.995 kb on + strand, within DDA3937_RS00430 at 100.995 kb on + strand, within DDA3937_RS00430 at 100.995 kb on + strand, within DDA3937_RS00430 at 100.995 kb on + strand, within DDA3937_RS00430 at 100.996 kb on - strand, within DDA3937_RS00430 at 100.996 kb on - strand, within DDA3937_RS00430 at 100.996 kb on - strand, within DDA3937_RS00430 at 100.996 kb on - strand, within DDA3937_RS00430 at 101.001 kb on + strand, within DDA3937_RS00430 at 101.154 kb on + strand at 101.154 kb on + strand at 101.195 kb on + strand at 101.195 kb on + strand at 101.195 kb on + strand at 101.195 kb on + strand at 101.195 kb on + strand at 101.196 kb on - strand at 101.196 kb on - strand at 101.196 kb on - strand at 101.196 kb on - strand at 101.196 kb on - strand at 101.196 kb on - strand at 101.201 kb on + strand at 101.201 kb on + strand at 101.201 kb on + strand at 101.202 kb on - strand at 101.202 kb on - strand at 101.202 kb on - strand at 101.232 kb on + strand at 101.232 kb on + strand at 101.232 kb on + strand at 101.232 kb on + strand at 101.232 kb on + strand at 101.233 kb on - strand at 101.233 kb on - strand at 101.233 kb on - strand at 101.278 kb on + strand at 101.301 kb on - strand at 101.306 kb on + strand at 101.316 kb on + strand at 101.317 kb on - strand at 101.323 kb on + strand at 101.324 kb on - strand at 101.324 kb on - strand at 101.324 kb on - strand at 101.406 kb on + strand, within DDA3937_RS00435 at 101.406 kb on + strand, within DDA3937_RS00435 at 101.407 kb on - strand, within DDA3937_RS00435 at 101.429 kb on + strand, within DDA3937_RS00435 at 101.441 kb on + strand, within DDA3937_RS00435 at 101.441 kb on + strand, within DDA3937_RS00435 at 101.442 kb on - strand, within DDA3937_RS00435 at 101.442 kb on - strand, within DDA3937_RS00435 at 101.442 kb on - strand at 101.444 kb on + strand, within DDA3937_RS00435 at 101.444 kb on + strand, within DDA3937_RS00435 at 101.550 kb on + strand, within DDA3937_RS00435 at 101.550 kb on + strand, within DDA3937_RS00435 at 101.550 kb on + strand, within DDA3937_RS00435 at 101.551 kb on - strand, within DDA3937_RS00435 at 101.551 kb on - strand, within DDA3937_RS00435 at 101.595 kb on - strand, within DDA3937_RS00435 at 101.696 kb on + strand, within DDA3937_RS00435 at 101.697 kb on - strand, within DDA3937_RS00435 at 101.697 kb on - strand, within DDA3937_RS00435 at 101.765 kb on - strand at 101.865 kb on - strand at 101.886 kb on - strand at 101.896 kb on + strand at 102.132 kb on + strand at 102.147 kb on + strand at 102.245 kb on + strand at 102.337 kb on - strand at 102.337 kb on - strand at 102.337 kb on - strand at 102.430 kb on + strand at 102.430 kb on + strand at 102.430 kb on + strand at 102.430 kb on + strand at 102.431 kb on - strand at 102.431 kb on - strand at 102.466 kb on + strand at 102.466 kb on + strand at 102.467 kb on - strand at 102.467 kb on - strand at 102.488 kb on - strand at 102.549 kb on + strand at 102.549 kb on + strand at 102.553 kb on + strand at 102.553 kb on + strand at 102.554 kb on - strand at 102.554 kb on - strand at 102.617 kb on - strand, within DDA3937_RS00440 at 102.617 kb on - strand, within DDA3937_RS00440
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 100,327 + +1.6 100,328 - DDA3937_RS00425 0.70 -0.6 100,328 - DDA3937_RS00425 0.70 +0.8 100,364 + DDA3937_RS00425 0.79 +0.7 100,365 - DDA3937_RS00425 0.80 +0.0 100,365 - DDA3937_RS00425 0.80 +1.1 100,365 - DDA3937_RS00425 0.80 -0.5 100,446 - +0.9 100,487 + -0.9 100,487 + +0.1 100,487 + +0.0 100,487 + -1.3 100,488 - -1.0 100,488 - +0.4 100,488 - -1.3 100,488 - -1.2 100,501 + +0.4 100,501 + -1.6 100,501 + +0.5 100,502 - -0.4 100,502 - -0.6 100,502 - +0.3 100,502 - +1.0 100,502 - -0.2 100,551 + +0.4 100,551 + -0.6 100,551 + +1.6 100,551 + -2.5 100,552 - +1.3 100,552 - -0.7 100,552 - +0.3 100,552 - +0.8 100,552 - +0.3 100,552 - -0.7 100,552 - -0.7 100,552 - -1.8 100,552 - -2.6 100,552 - -1.5 100,552 - -2.1 100,559 + +0.3 100,559 + +0.3 100,559 + +1.9 100,559 + -0.1 100,560 - -0.7 100,560 - +0.3 100,560 - -0.6 100,628 + -0.7 100,628 + -0.1 100,628 + +0.0 100,628 + -0.4 100,628 + +0.6 100,629 - -0.1 100,629 - -0.6 100,629 - -0.3 100,635 + -1.2 100,635 + +1.0 100,666 + -0.6 100,666 + -1.2 100,667 - +0.2 100,667 - -1.9 100,730 + +0.6 100,730 + -0.9 100,731 - -1.7 100,731 - -0.1 100,742 + +0.0 100,742 + -0.6 100,770 + +1.2 100,770 + -1.4 100,771 - -1.4 100,771 - +0.1 100,802 + DDA3937_RS00430 0.14 +0.6 100,851 + DDA3937_RS00430 0.26 +0.2 100,852 - DDA3937_RS00430 0.26 +0.2 100,852 - DDA3937_RS00430 0.26 +1.0 100,853 + DDA3937_RS00430 0.27 -1.2 100,995 + DDA3937_RS00430 0.61 -1.7 100,995 + DDA3937_RS00430 0.61 +0.0 100,995 + DDA3937_RS00430 0.61 -0.4 100,995 + DDA3937_RS00430 0.61 +1.0 100,995 + DDA3937_RS00430 0.61 +0.7 100,996 - DDA3937_RS00430 0.61 -0.6 100,996 - DDA3937_RS00430 0.61 -2.7 100,996 - DDA3937_RS00430 0.61 +0.2 100,996 - DDA3937_RS00430 0.61 -0.3 101,001 + DDA3937_RS00430 0.62 -0.7 101,154 + +1.6 101,154 + +0.0 101,195 + +0.9 101,195 + -2.0 101,195 + -0.1 101,195 + +0.7 101,195 + +0.6 101,196 - +0.2 101,196 - -1.1 101,196 - +2.2 101,196 - +0.5 101,196 - -0.2 101,196 - -1.2 101,201 + +3.8 101,201 + -2.1 101,201 + -1.9 101,202 - -0.8 101,202 - +0.2 101,202 - +0.3 101,232 + +0.9 101,232 + -0.3 101,232 + -0.6 101,232 + -1.1 101,232 + -0.2 101,233 - -1.6 101,233 - -1.6 101,233 - +0.2 101,278 + -0.9 101,301 - -1.6 101,306 + -1.7 101,316 + -1.2 101,317 - -0.5 101,323 + -1.1 101,324 - -1.6 101,324 - +1.6 101,324 - -0.9 101,406 + DDA3937_RS00435 0.22 -0.3 101,406 + DDA3937_RS00435 0.22 -0.9 101,407 - DDA3937_RS00435 0.22 -0.5 101,429 + DDA3937_RS00435 0.27 -0.2 101,441 + DDA3937_RS00435 0.30 -1.4 101,441 + DDA3937_RS00435 0.30 +0.4 101,442 - DDA3937_RS00435 0.30 -0.7 101,442 - DDA3937_RS00435 0.30 +0.1 101,442 - +2.0 101,444 + DDA3937_RS00435 0.30 +0.3 101,444 + DDA3937_RS00435 0.30 -0.7 101,550 + DDA3937_RS00435 0.54 +0.0 101,550 + DDA3937_RS00435 0.54 -0.6 101,550 + DDA3937_RS00435 0.54 -0.4 101,551 - DDA3937_RS00435 0.54 +1.3 101,551 - DDA3937_RS00435 0.54 -0.1 101,595 - DDA3937_RS00435 0.64 +0.9 101,696 + DDA3937_RS00435 0.86 +0.8 101,697 - DDA3937_RS00435 0.87 +0.0 101,697 - DDA3937_RS00435 0.87 -0.8 101,765 - -0.3 101,865 - -0.7 101,886 - -0.3 101,896 + -1.2 102,132 + -1.2 102,147 + +0.8 102,245 + +0.3 102,337 - -2.0 102,337 - +0.9 102,337 - -1.1 102,430 + -1.2 102,430 + +0.6 102,430 + +0.5 102,430 + -0.8 102,431 - -0.2 102,431 - -0.8 102,466 + +0.1 102,466 + -0.0 102,467 - -0.9 102,467 - +0.1 102,488 - -0.1 102,549 + +0.9 102,549 + -0.1 102,553 + -0.1 102,553 + +0.0 102,554 - -0.3 102,554 - -0.7 102,617 - DDA3937_RS00440 0.13 -3.1 102,617 - DDA3937_RS00440 0.13 -1.4
Or see this region's nucleotide sequence