Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS00280

Experiment: Upstate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS00270 and DDA3937_RS00275 are separated by 422 nucleotidesDDA3937_RS00275 and DDA3937_RS00280 overlap by 1 nucleotidesDDA3937_RS00280 and DDA3937_RS00285 are separated by 376 nucleotidesDDA3937_RS00285 and DDA3937_RS00290 are separated by 178 nucleotides DDA3937_RS00270: DDA3937_RS00270 - hypothetical protein, at 64,272 to 65,327 _RS00270 DDA3937_RS00275: DDA3937_RS00275 - GNAT family N-acetyltransferase, at 65,750 to 66,100 _RS00275 DDA3937_RS00280: DDA3937_RS00280 - D-serine ammonia-lyase, at 66,100 to 67,473 _RS00280 DDA3937_RS00285: DDA3937_RS00285 - hypothetical protein, at 67,850 to 68,131 _RS00285 DDA3937_RS00290: DDA3937_RS00290 - DUF1471 domain-containing protein, at 68,310 to 68,576 _RS00290 Position (kb) 66 67 68Strain fitness (log2 ratio) -2 -1 0 1 2 3at 65.122 kb on - strand, within DDA3937_RS00270at 65.214 kb on - strand, within DDA3937_RS00270at 65.214 kb on - strand, within DDA3937_RS00270at 65.264 kb on + strandat 65.277 kb on + strandat 65.277 kb on + strandat 65.278 kb on - strandat 65.278 kb on - strandat 65.431 kb on + strandat 65.452 kb on - strandat 65.460 kb on - strandat 65.473 kb on + strandat 65.480 kb on - strandat 65.480 kb on - strandat 65.480 kb on - strandat 65.482 kb on - strandat 65.491 kb on - strandat 65.491 kb on - strandat 65.491 kb on - strandat 65.518 kb on - strandat 65.518 kb on - strandat 65.520 kb on + strandat 65.521 kb on - strandat 65.521 kb on - strandat 65.654 kb on - strandat 65.747 kb on + strandat 65.749 kb on + strandat 65.749 kb on + strandat 65.749 kb on + strandat 65.749 kb on + strandat 65.844 kb on + strand, within DDA3937_RS00275at 65.943 kb on + strand, within DDA3937_RS00275at 65.944 kb on - strand, within DDA3937_RS00275at 65.944 kb on - strand, within DDA3937_RS00275at 65.944 kb on - strand, within DDA3937_RS00275at 65.944 kb on - strand, within DDA3937_RS00275at 66.006 kb on + strandat 66.007 kb on - strand, within DDA3937_RS00275at 66.007 kb on - strand, within DDA3937_RS00275at 66.007 kb on - strand, within DDA3937_RS00275at 66.082 kb on + strandat 66.115 kb on - strandat 66.198 kb on + strandat 66.198 kb on + strandat 66.199 kb on - strandat 66.199 kb on - strandat 66.199 kb on - strandat 66.380 kb on + strand, within DDA3937_RS00280at 66.381 kb on - strand, within DDA3937_RS00280at 66.383 kb on + strand, within DDA3937_RS00280at 66.383 kb on + strand, within DDA3937_RS00280at 66.383 kb on + strand, within DDA3937_RS00280at 66.383 kb on + strand, within DDA3937_RS00280at 66.383 kb on + strand, within DDA3937_RS00280at 66.384 kb on - strand, within DDA3937_RS00280at 66.406 kb on - strand, within DDA3937_RS00280at 66.512 kb on + strand, within DDA3937_RS00280at 66.512 kb on + strand, within DDA3937_RS00280at 66.634 kb on + strand, within DDA3937_RS00280at 66.635 kb on - strand, within DDA3937_RS00280at 66.635 kb on - strand, within DDA3937_RS00280at 66.638 kb on + strand, within DDA3937_RS00280at 66.638 kb on + strand, within DDA3937_RS00280at 66.639 kb on - strand, within DDA3937_RS00280at 66.639 kb on - strand, within DDA3937_RS00280at 66.639 kb on - strand, within DDA3937_RS00280at 66.757 kb on - strand, within DDA3937_RS00280at 66.816 kb on - strand, within DDA3937_RS00280at 66.827 kb on + strand, within DDA3937_RS00280at 67.080 kb on - strand, within DDA3937_RS00280at 67.080 kb on - strand, within DDA3937_RS00280at 67.080 kb on - strand, within DDA3937_RS00280at 67.091 kb on + strand, within DDA3937_RS00280at 67.092 kb on - strand, within DDA3937_RS00280at 67.150 kb on + strand, within DDA3937_RS00280at 67.150 kb on + strand, within DDA3937_RS00280at 67.150 kb on + strand, within DDA3937_RS00280at 67.151 kb on - strand, within DDA3937_RS00280at 67.151 kb on - strand, within DDA3937_RS00280at 67.452 kb on + strandat 67.452 kb on + strandat 67.453 kb on - strandat 67.457 kb on + strandat 67.458 kb on - strandat 67.458 kb on - strandat 67.459 kb on + strandat 67.460 kb on - strandat 67.475 kb on - strandat 67.526 kb on + strandat 67.609 kb on - strandat 67.614 kb on + strandat 67.633 kb on + strandat 67.692 kb on + strandat 67.719 kb on - strandat 67.775 kb on + strandat 67.775 kb on + strandat 67.775 kb on + strandat 67.776 kb on - strandat 67.776 kb on - strandat 67.776 kb on - strandat 67.820 kb on + strandat 67.845 kb on + strandat 67.845 kb on + strandat 67.845 kb on + strandat 67.845 kb on + strandat 67.845 kb on + strandat 67.846 kb on - strandat 67.846 kb on - strandat 67.846 kb on - strandat 67.846 kb on - strandat 67.846 kb on - strandat 67.846 kb on - strandat 67.857 kb on + strandat 67.857 kb on + strandat 67.857 kb on + strandat 67.857 kb on + strandat 67.912 kb on + strand, within DDA3937_RS00285at 67.913 kb on - strand, within DDA3937_RS00285at 67.992 kb on - strand, within DDA3937_RS00285at 67.992 kb on - strand, within DDA3937_RS00285at 68.053 kb on + strand, within DDA3937_RS00285at 68.053 kb on + strand, within DDA3937_RS00285at 68.053 kb on + strand, within DDA3937_RS00285at 68.053 kb on + strand, within DDA3937_RS00285at 68.053 kb on + strand, within DDA3937_RS00285at 68.053 kb on + strand, within DDA3937_RS00285at 68.053 kb on + strand, within DDA3937_RS00285at 68.053 kb on + strand, within DDA3937_RS00285at 68.054 kb on - strand, within DDA3937_RS00285at 68.054 kb on - strand, within DDA3937_RS00285at 68.054 kb on - strand, within DDA3937_RS00285at 68.054 kb on - strand, within DDA3937_RS00285at 68.054 kb on - strand, within DDA3937_RS00285at 68.054 kb on - strand, within DDA3937_RS00285at 68.259 kb on + strandat 68.401 kb on + strand, within DDA3937_RS00290at 68.401 kb on + strand, within DDA3937_RS00290at 68.402 kb on - strand, within DDA3937_RS00290at 68.402 kb on - strand, within DDA3937_RS00290at 68.402 kb on - strand, within DDA3937_RS00290at 68.402 kb on - strand, within DDA3937_RS00290

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Per-strain Table

Position Strand Gene LocusTag Fraction Upstate
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65,122 - DDA3937_RS00270 0.80 +0.4
65,214 - DDA3937_RS00270 0.89 +1.6
65,214 - DDA3937_RS00270 0.89 +0.3
65,264 + -2.1
65,277 + -0.7
65,277 + -1.1
65,278 - +0.4
65,278 - -0.4
65,431 + +2.1
65,452 - +0.9
65,460 - -0.4
65,473 + +0.5
65,480 - +0.5
65,480 - +0.6
65,480 - -0.7
65,482 - +1.2
65,491 - +0.9
65,491 - +0.5
65,491 - -0.7
65,518 - -1.2
65,518 - -0.1
65,520 + -1.2
65,521 - -0.8
65,521 - -0.6
65,654 - +0.1
65,747 + -0.1
65,749 + -1.0
65,749 + +1.2
65,749 + -0.8
65,749 + -1.6
65,844 + DDA3937_RS00275 0.27 +0.1
65,943 + DDA3937_RS00275 0.55 +0.2
65,944 - DDA3937_RS00275 0.55 -1.5
65,944 - DDA3937_RS00275 0.55 -0.4
65,944 - DDA3937_RS00275 0.55 +0.9
65,944 - DDA3937_RS00275 0.55 -0.0
66,006 + +0.0
66,007 - DDA3937_RS00275 0.73 +0.0
66,007 - DDA3937_RS00275 0.73 -0.1
66,007 - DDA3937_RS00275 0.73 -0.7
66,082 + +0.2
66,115 - +0.0
66,198 + -0.7
66,198 + +1.1
66,199 - -0.3
66,199 - +2.0
66,199 - +0.4
66,380 + DDA3937_RS00280 0.20 -0.4
66,381 - DDA3937_RS00280 0.20 +1.2
66,383 + DDA3937_RS00280 0.21 -0.8
66,383 + DDA3937_RS00280 0.21 -1.4
66,383 + DDA3937_RS00280 0.21 -1.4
66,383 + DDA3937_RS00280 0.21 -1.1
66,383 + DDA3937_RS00280 0.21 -0.3
66,384 - DDA3937_RS00280 0.21 +0.5
66,406 - DDA3937_RS00280 0.22 -0.2
66,512 + DDA3937_RS00280 0.30 +1.4
66,512 + DDA3937_RS00280 0.30 +0.4
66,634 + DDA3937_RS00280 0.39 +0.0
66,635 - DDA3937_RS00280 0.39 -0.7
66,635 - DDA3937_RS00280 0.39 +0.1
66,638 + DDA3937_RS00280 0.39 -1.9
66,638 + DDA3937_RS00280 0.39 -1.4
66,639 - DDA3937_RS00280 0.39 -0.2
66,639 - DDA3937_RS00280 0.39 -0.6
66,639 - DDA3937_RS00280 0.39 -0.9
66,757 - DDA3937_RS00280 0.48 -1.3
66,816 - DDA3937_RS00280 0.52 +0.6
66,827 + DDA3937_RS00280 0.53 +0.1
67,080 - DDA3937_RS00280 0.71 -0.8
67,080 - DDA3937_RS00280 0.71 -1.9
67,080 - DDA3937_RS00280 0.71 +0.2
67,091 + DDA3937_RS00280 0.72 +0.2
67,092 - DDA3937_RS00280 0.72 -0.8
67,150 + DDA3937_RS00280 0.76 -0.6
67,150 + DDA3937_RS00280 0.76 -0.8
67,150 + DDA3937_RS00280 0.76 -0.7
67,151 - DDA3937_RS00280 0.76 -0.5
67,151 - DDA3937_RS00280 0.76 +0.1
67,452 + +1.1
67,452 + -0.3
67,453 - -0.3
67,457 + -1.5
67,458 - +0.1
67,458 - +0.8
67,459 + -0.3
67,460 - -0.7
67,475 - -0.7
67,526 + -0.0
67,609 - -1.5
67,614 + -0.0
67,633 + +0.1
67,692 + -0.1
67,719 - -0.1
67,775 + -0.9
67,775 + -1.6
67,775 + +0.8
67,776 - -0.4
67,776 - -0.7
67,776 - +0.3
67,820 + -1.1
67,845 + -2.3
67,845 + -1.6
67,845 + -0.0
67,845 + +0.7
67,845 + -1.0
67,846 - -0.3
67,846 - -0.5
67,846 - +0.2
67,846 - -1.2
67,846 - -2.0
67,846 - +2.8
67,857 + -0.3
67,857 + -1.5
67,857 + -0.1
67,857 + -0.1
67,912 + DDA3937_RS00285 0.22 -2.2
67,913 - DDA3937_RS00285 0.22 -1.0
67,992 - DDA3937_RS00285 0.50 -2.2
67,992 - DDA3937_RS00285 0.50 -1.9
68,053 + DDA3937_RS00285 0.72 -0.1
68,053 + DDA3937_RS00285 0.72 +0.7
68,053 + DDA3937_RS00285 0.72 -1.7
68,053 + DDA3937_RS00285 0.72 -1.0
68,053 + DDA3937_RS00285 0.72 -0.3
68,053 + DDA3937_RS00285 0.72 -1.0
68,053 + DDA3937_RS00285 0.72 -0.7
68,053 + DDA3937_RS00285 0.72 -0.6
68,054 - DDA3937_RS00285 0.72 -0.9
68,054 - DDA3937_RS00285 0.72 -0.8
68,054 - DDA3937_RS00285 0.72 -1.4
68,054 - DDA3937_RS00285 0.72 -1.0
68,054 - DDA3937_RS00285 0.72 -0.0
68,054 - DDA3937_RS00285 0.72 -1.4
68,259 + -0.4
68,401 + DDA3937_RS00290 0.34 +0.4
68,401 + DDA3937_RS00290 0.34 -1.1
68,402 - DDA3937_RS00290 0.34 +1.1
68,402 - DDA3937_RS00290 0.34 -1.9
68,402 - DDA3937_RS00290 0.34 -0.2
68,402 - DDA3937_RS00290 0.34 -0.7

Or see this region's nucleotide sequence