Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS00075 and DDA3937_RS00080 are separated by 257 nucleotides DDA3937_RS00080 and DDA3937_RS00085 overlap by 8 nucleotides DDA3937_RS00085 and DDA3937_RS00090 are separated by 110 nucleotides DDA3937_RS00090 and DDA3937_RS00095 are separated by 41 nucleotides
DDA3937_RS00075: DDA3937_RS00075 - 5S ribosomal RNA, at 17,890 to 18,005
_RS00075
DDA3937_RS00080: DDA3937_RS00080 - molybdopterin-guanine dinucleotide biosynthesis protein B, at 18,263 to 18,790
_RS00080
DDA3937_RS00085: DDA3937_RS00085 - molybdenum cofactor guanylyltransferase MobA, at 18,783 to 19,358
_RS00085
DDA3937_RS00090: DDA3937_RS00090 - YihD family protein, at 19,469 to 19,738
_RS00090
DDA3937_RS00095: DDA3937_RS00095 - serine/threonine protein kinase, at 19,780 to 20,766
_RS00095
Position (kb) 18
19
20 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 18.438 kb on + strand, within DDA3937_RS00080 at 18.528 kb on + strand, within DDA3937_RS00080 at 18.528 kb on + strand, within DDA3937_RS00080 at 18.530 kb on + strand, within DDA3937_RS00080 at 18.531 kb on - strand, within DDA3937_RS00080 at 18.531 kb on - strand, within DDA3937_RS00080 at 18.531 kb on - strand, within DDA3937_RS00080 at 18.627 kb on + strand, within DDA3937_RS00080 at 18.627 kb on + strand, within DDA3937_RS00080 at 18.627 kb on + strand, within DDA3937_RS00080 at 18.628 kb on - strand, within DDA3937_RS00080 at 18.628 kb on - strand, within DDA3937_RS00080 at 18.628 kb on - strand, within DDA3937_RS00080 at 18.628 kb on - strand, within DDA3937_RS00080 at 18.628 kb on - strand, within DDA3937_RS00080 at 18.628 kb on - strand, within DDA3937_RS00080 at 18.628 kb on - strand, within DDA3937_RS00080 at 18.628 kb on - strand, within DDA3937_RS00080 at 18.670 kb on + strand, within DDA3937_RS00080 at 18.670 kb on + strand, within DDA3937_RS00080 at 18.670 kb on + strand, within DDA3937_RS00080 at 18.670 kb on + strand, within DDA3937_RS00080 at 18.670 kb on + strand, within DDA3937_RS00080 at 18.670 kb on + strand, within DDA3937_RS00080 at 18.671 kb on - strand, within DDA3937_RS00080 at 18.671 kb on - strand, within DDA3937_RS00080 at 18.671 kb on - strand, within DDA3937_RS00080 at 18.671 kb on - strand, within DDA3937_RS00080 at 18.671 kb on - strand, within DDA3937_RS00080 at 18.671 kb on - strand, within DDA3937_RS00080 at 18.731 kb on + strand, within DDA3937_RS00080 at 18.748 kb on + strand at 18.763 kb on + strand at 18.779 kb on + strand at 18.780 kb on - strand at 18.780 kb on - strand at 18.780 kb on - strand at 18.882 kb on + strand, within DDA3937_RS00085 at 18.882 kb on + strand, within DDA3937_RS00085 at 18.882 kb on + strand, within DDA3937_RS00085 at 18.883 kb on - strand, within DDA3937_RS00085 at 18.883 kb on - strand, within DDA3937_RS00085 at 18.883 kb on - strand, within DDA3937_RS00085 at 18.928 kb on + strand, within DDA3937_RS00085 at 18.928 kb on + strand, within DDA3937_RS00085 at 18.928 kb on + strand, within DDA3937_RS00085 at 18.929 kb on - strand, within DDA3937_RS00085 at 18.929 kb on - strand, within DDA3937_RS00085 at 18.929 kb on - strand, within DDA3937_RS00085 at 18.970 kb on - strand, within DDA3937_RS00085 at 19.004 kb on - strand, within DDA3937_RS00085 at 19.004 kb on - strand, within DDA3937_RS00085 at 19.004 kb on - strand, within DDA3937_RS00085 at 19.015 kb on + strand, within DDA3937_RS00085 at 19.015 kb on + strand, within DDA3937_RS00085 at 19.015 kb on + strand, within DDA3937_RS00085 at 19.015 kb on + strand, within DDA3937_RS00085 at 19.015 kb on + strand, within DDA3937_RS00085 at 19.015 kb on + strand, within DDA3937_RS00085 at 19.015 kb on + strand, within DDA3937_RS00085 at 19.015 kb on + strand, within DDA3937_RS00085 at 19.015 kb on + strand, within DDA3937_RS00085 at 19.016 kb on - strand, within DDA3937_RS00085 at 19.016 kb on - strand, within DDA3937_RS00085 at 19.016 kb on - strand, within DDA3937_RS00085 at 19.016 kb on - strand, within DDA3937_RS00085 at 19.020 kb on - strand, within DDA3937_RS00085 at 19.020 kb on - strand, within DDA3937_RS00085 at 19.026 kb on + strand, within DDA3937_RS00085 at 19.027 kb on - strand, within DDA3937_RS00085 at 19.027 kb on - strand at 19.127 kb on + strand, within DDA3937_RS00085 at 19.157 kb on + strand, within DDA3937_RS00085 at 19.192 kb on + strand, within DDA3937_RS00085 at 19.230 kb on - strand, within DDA3937_RS00085 at 19.244 kb on + strand, within DDA3937_RS00085 at 19.245 kb on - strand, within DDA3937_RS00085 at 19.245 kb on - strand, within DDA3937_RS00085 at 19.245 kb on - strand, within DDA3937_RS00085 at 19.267 kb on + strand, within DDA3937_RS00085 at 19.268 kb on - strand, within DDA3937_RS00085 at 19.268 kb on - strand, within DDA3937_RS00085 at 19.353 kb on + strand at 19.361 kb on + strand at 19.362 kb on - strand at 19.389 kb on + strand at 19.389 kb on + strand at 19.431 kb on + strand at 19.434 kb on + strand at 19.434 kb on + strand at 19.434 kb on + strand at 19.434 kb on + strand at 19.434 kb on + strand at 19.434 kb on + strand at 19.434 kb on + strand at 19.452 kb on + strand at 19.453 kb on - strand at 19.462 kb on - strand at 19.612 kb on + strand, within DDA3937_RS00090 at 19.613 kb on - strand, within DDA3937_RS00090 at 19.618 kb on + strand, within DDA3937_RS00090 at 19.618 kb on + strand, within DDA3937_RS00090 at 19.618 kb on + strand, within DDA3937_RS00090 at 19.618 kb on + strand, within DDA3937_RS00090 at 19.618 kb on + strand, within DDA3937_RS00090 at 19.618 kb on + strand, within DDA3937_RS00090 at 19.618 kb on + strand, within DDA3937_RS00090 at 19.618 kb on + strand, within DDA3937_RS00090 at 19.619 kb on - strand, within DDA3937_RS00090 at 19.619 kb on - strand, within DDA3937_RS00090 at 19.619 kb on - strand, within DDA3937_RS00090 at 19.619 kb on - strand, within DDA3937_RS00090 at 19.622 kb on + strand at 19.622 kb on + strand, within DDA3937_RS00090 at 19.623 kb on - strand, within DDA3937_RS00090 at 19.623 kb on - strand, within DDA3937_RS00090 at 19.623 kb on - strand, within DDA3937_RS00090 at 19.629 kb on + strand, within DDA3937_RS00090 at 19.661 kb on - strand, within DDA3937_RS00090 at 19.707 kb on + strand, within DDA3937_RS00090 at 19.751 kb on + strand at 19.751 kb on + strand at 19.751 kb on + strand at 19.752 kb on - strand at 19.752 kb on - strand at 19.806 kb on + strand at 19.806 kb on + strand at 19.807 kb on - strand at 19.807 kb on - strand at 19.881 kb on + strand, within DDA3937_RS00095 at 19.881 kb on + strand, within DDA3937_RS00095 at 19.882 kb on - strand, within DDA3937_RS00095 at 19.884 kb on + strand, within DDA3937_RS00095 at 19.884 kb on + strand, within DDA3937_RS00095 at 19.884 kb on + strand, within DDA3937_RS00095 at 19.885 kb on - strand, within DDA3937_RS00095 at 19.885 kb on - strand, within DDA3937_RS00095 at 19.885 kb on - strand, within DDA3937_RS00095 at 19.885 kb on - strand, within DDA3937_RS00095 at 19.885 kb on - strand, within DDA3937_RS00095 at 19.885 kb on - strand, within DDA3937_RS00095 at 19.885 kb on - strand, within DDA3937_RS00095 at 19.885 kb on - strand, within DDA3937_RS00095 at 19.885 kb on - strand, within DDA3937_RS00095 at 19.885 kb on - strand, within DDA3937_RS00095 at 19.885 kb on - strand, within DDA3937_RS00095 at 19.885 kb on - strand, within DDA3937_RS00095 at 19.885 kb on - strand, within DDA3937_RS00095 at 19.888 kb on + strand, within DDA3937_RS00095 at 19.888 kb on + strand, within DDA3937_RS00095 at 19.888 kb on + strand, within DDA3937_RS00095 at 19.889 kb on - strand, within DDA3937_RS00095 at 19.889 kb on - strand, within DDA3937_RS00095 at 19.889 kb on - strand, within DDA3937_RS00095 at 19.889 kb on - strand, within DDA3937_RS00095 at 19.903 kb on + strand, within DDA3937_RS00095 at 19.903 kb on + strand at 19.904 kb on - strand, within DDA3937_RS00095 at 19.926 kb on + strand, within DDA3937_RS00095 at 19.926 kb on + strand, within DDA3937_RS00095 at 19.927 kb on - strand, within DDA3937_RS00095 at 19.927 kb on - strand, within DDA3937_RS00095 at 19.927 kb on - strand, within DDA3937_RS00095 at 19.933 kb on + strand, within DDA3937_RS00095 at 19.934 kb on - strand, within DDA3937_RS00095 at 19.934 kb on - strand, within DDA3937_RS00095 at 19.934 kb on - strand, within DDA3937_RS00095 at 19.934 kb on - strand, within DDA3937_RS00095 at 19.934 kb on - strand, within DDA3937_RS00095 at 19.934 kb on - strand, within DDA3937_RS00095 at 20.119 kb on + strand, within DDA3937_RS00095 at 20.161 kb on + strand, within DDA3937_RS00095 at 20.162 kb on - strand, within DDA3937_RS00095 at 20.214 kb on + strand, within DDA3937_RS00095 at 20.214 kb on + strand, within DDA3937_RS00095 at 20.215 kb on - strand, within DDA3937_RS00095 at 20.234 kb on - strand, within DDA3937_RS00095 at 20.258 kb on + strand, within DDA3937_RS00095 at 20.258 kb on + strand, within DDA3937_RS00095 at 20.258 kb on + strand, within DDA3937_RS00095 at 20.259 kb on - strand, within DDA3937_RS00095 at 20.259 kb on - strand, within DDA3937_RS00095
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 18,438 + DDA3937_RS00080 0.33 -1.1 18,528 + DDA3937_RS00080 0.50 -0.7 18,528 + DDA3937_RS00080 0.50 -0.2 18,530 + DDA3937_RS00080 0.51 -1.0 18,531 - DDA3937_RS00080 0.51 +0.1 18,531 - DDA3937_RS00080 0.51 +0.0 18,531 - DDA3937_RS00080 0.51 +0.8 18,627 + DDA3937_RS00080 0.69 +0.6 18,627 + DDA3937_RS00080 0.69 -1.1 18,627 + DDA3937_RS00080 0.69 -0.6 18,628 - DDA3937_RS00080 0.69 +0.0 18,628 - DDA3937_RS00080 0.69 +0.0 18,628 - DDA3937_RS00080 0.69 -0.7 18,628 - DDA3937_RS00080 0.69 -0.2 18,628 - DDA3937_RS00080 0.69 +1.0 18,628 - DDA3937_RS00080 0.69 -1.0 18,628 - DDA3937_RS00080 0.69 -1.2 18,628 - DDA3937_RS00080 0.69 -1.1 18,670 + DDA3937_RS00080 0.77 -0.4 18,670 + DDA3937_RS00080 0.77 -0.2 18,670 + DDA3937_RS00080 0.77 -0.4 18,670 + DDA3937_RS00080 0.77 +0.3 18,670 + DDA3937_RS00080 0.77 -1.1 18,670 + DDA3937_RS00080 0.77 -0.5 18,671 - DDA3937_RS00080 0.77 -1.2 18,671 - DDA3937_RS00080 0.77 -0.4 18,671 - DDA3937_RS00080 0.77 -1.0 18,671 - DDA3937_RS00080 0.77 +0.1 18,671 - DDA3937_RS00080 0.77 -1.1 18,671 - DDA3937_RS00080 0.77 -0.3 18,731 + DDA3937_RS00080 0.89 -2.1 18,748 + -2.3 18,763 + +1.0 18,779 + -0.2 18,780 - -0.4 18,780 - -0.6 18,780 - -0.3 18,882 + DDA3937_RS00085 0.17 -1.7 18,882 + DDA3937_RS00085 0.17 +0.2 18,882 + DDA3937_RS00085 0.17 -1.1 18,883 - DDA3937_RS00085 0.17 +1.2 18,883 - DDA3937_RS00085 0.17 -0.9 18,883 - DDA3937_RS00085 0.17 -1.2 18,928 + DDA3937_RS00085 0.25 -1.8 18,928 + DDA3937_RS00085 0.25 -0.9 18,928 + DDA3937_RS00085 0.25 -0.5 18,929 - DDA3937_RS00085 0.25 -3.1 18,929 - DDA3937_RS00085 0.25 -1.1 18,929 - DDA3937_RS00085 0.25 -1.4 18,970 - DDA3937_RS00085 0.32 -2.5 19,004 - DDA3937_RS00085 0.38 -0.6 19,004 - DDA3937_RS00085 0.38 -1.2 19,004 - DDA3937_RS00085 0.38 -0.4 19,015 + DDA3937_RS00085 0.40 -1.5 19,015 + DDA3937_RS00085 0.40 -1.6 19,015 + DDA3937_RS00085 0.40 -1.2 19,015 + DDA3937_RS00085 0.40 -1.8 19,015 + DDA3937_RS00085 0.40 -0.4 19,015 + DDA3937_RS00085 0.40 -0.2 19,015 + DDA3937_RS00085 0.40 -1.2 19,015 + DDA3937_RS00085 0.40 -0.9 19,015 + DDA3937_RS00085 0.40 -1.0 19,016 - DDA3937_RS00085 0.40 -2.9 19,016 - DDA3937_RS00085 0.40 -0.4 19,016 - DDA3937_RS00085 0.40 -1.2 19,016 - DDA3937_RS00085 0.40 -3.5 19,020 - DDA3937_RS00085 0.41 -1.9 19,020 - DDA3937_RS00085 0.41 -0.6 19,026 + DDA3937_RS00085 0.42 -1.9 19,027 - DDA3937_RS00085 0.42 -4.0 19,027 - -0.7 19,127 + DDA3937_RS00085 0.60 -2.9 19,157 + DDA3937_RS00085 0.65 -0.1 19,192 + DDA3937_RS00085 0.71 -1.4 19,230 - DDA3937_RS00085 0.78 -0.4 19,244 + DDA3937_RS00085 0.80 +0.5 19,245 - DDA3937_RS00085 0.80 -2.1 19,245 - DDA3937_RS00085 0.80 -2.5 19,245 - DDA3937_RS00085 0.80 +0.0 19,267 + DDA3937_RS00085 0.84 +0.2 19,268 - DDA3937_RS00085 0.84 -1.3 19,268 - DDA3937_RS00085 0.84 -0.7 19,353 + +1.5 19,361 + -0.2 19,362 - +0.0 19,389 + +0.8 19,389 + -0.7 19,431 + -1.7 19,434 + -0.1 19,434 + -0.2 19,434 + +0.9 19,434 + -0.6 19,434 + +0.7 19,434 + +0.3 19,434 + -0.2 19,452 + +2.1 19,453 - -1.5 19,462 - -0.3 19,612 + DDA3937_RS00090 0.53 -1.4 19,613 - DDA3937_RS00090 0.53 -0.6 19,618 + DDA3937_RS00090 0.55 +2.2 19,618 + DDA3937_RS00090 0.55 -1.0 19,618 + DDA3937_RS00090 0.55 +0.0 19,618 + DDA3937_RS00090 0.55 -1.2 19,618 + DDA3937_RS00090 0.55 -1.0 19,618 + DDA3937_RS00090 0.55 -0.2 19,618 + DDA3937_RS00090 0.55 -1.0 19,618 + DDA3937_RS00090 0.55 -2.1 19,619 - DDA3937_RS00090 0.56 -0.7 19,619 - DDA3937_RS00090 0.56 -2.0 19,619 - DDA3937_RS00090 0.56 -1.6 19,619 - DDA3937_RS00090 0.56 -0.6 19,622 + +1.6 19,622 + DDA3937_RS00090 0.57 -0.4 19,623 - DDA3937_RS00090 0.57 -1.3 19,623 - DDA3937_RS00090 0.57 +0.8 19,623 - DDA3937_RS00090 0.57 -1.7 19,629 + DDA3937_RS00090 0.59 +1.6 19,661 - DDA3937_RS00090 0.71 -0.4 19,707 + DDA3937_RS00090 0.88 -0.2 19,751 + -1.0 19,751 + -0.7 19,751 + -0.9 19,752 - -1.2 19,752 - -0.2 19,806 + -1.0 19,806 + -1.1 19,807 - -0.7 19,807 - -1.6 19,881 + DDA3937_RS00095 0.10 -0.2 19,881 + DDA3937_RS00095 0.10 -1.1 19,882 - DDA3937_RS00095 0.10 -0.8 19,884 + DDA3937_RS00095 0.11 +0.9 19,884 + DDA3937_RS00095 0.11 -1.2 19,884 + DDA3937_RS00095 0.11 -0.7 19,885 - DDA3937_RS00095 0.11 -1.2 19,885 - DDA3937_RS00095 0.11 +1.6 19,885 - DDA3937_RS00095 0.11 -1.6 19,885 - DDA3937_RS00095 0.11 -0.4 19,885 - DDA3937_RS00095 0.11 -0.3 19,885 - DDA3937_RS00095 0.11 -3.5 19,885 - DDA3937_RS00095 0.11 -1.1 19,885 - DDA3937_RS00095 0.11 -2.5 19,885 - DDA3937_RS00095 0.11 -0.3 19,885 - DDA3937_RS00095 0.11 -1.6 19,885 - DDA3937_RS00095 0.11 -0.3 19,885 - DDA3937_RS00095 0.11 -0.3 19,885 - DDA3937_RS00095 0.11 -1.3 19,888 + DDA3937_RS00095 0.11 -1.0 19,888 + DDA3937_RS00095 0.11 -1.6 19,888 + DDA3937_RS00095 0.11 -1.1 19,889 - DDA3937_RS00095 0.11 +0.6 19,889 - DDA3937_RS00095 0.11 +0.2 19,889 - DDA3937_RS00095 0.11 -0.4 19,889 - DDA3937_RS00095 0.11 -0.4 19,903 + DDA3937_RS00095 0.12 +2.2 19,903 + +0.0 19,904 - DDA3937_RS00095 0.13 -0.8 19,926 + DDA3937_RS00095 0.15 +0.7 19,926 + DDA3937_RS00095 0.15 -0.4 19,927 - DDA3937_RS00095 0.15 -0.7 19,927 - DDA3937_RS00095 0.15 -3.0 19,927 - DDA3937_RS00095 0.15 -1.1 19,933 + DDA3937_RS00095 0.16 +0.4 19,934 - DDA3937_RS00095 0.16 +0.7 19,934 - DDA3937_RS00095 0.16 -2.0 19,934 - DDA3937_RS00095 0.16 +0.0 19,934 - DDA3937_RS00095 0.16 -0.4 19,934 - DDA3937_RS00095 0.16 +0.0 19,934 - DDA3937_RS00095 0.16 -1.0 20,119 + DDA3937_RS00095 0.34 -2.2 20,161 + DDA3937_RS00095 0.39 -1.9 20,162 - DDA3937_RS00095 0.39 +0.4 20,214 + DDA3937_RS00095 0.44 +0.6 20,214 + DDA3937_RS00095 0.44 +0.3 20,215 - DDA3937_RS00095 0.44 -0.3 20,234 - DDA3937_RS00095 0.46 +0.3 20,258 + DDA3937_RS00095 0.48 +0.5 20,258 + DDA3937_RS00095 0.48 -2.0 20,258 + DDA3937_RS00095 0.48 +2.2 20,259 - DDA3937_RS00095 0.49 -0.4 20,259 - DDA3937_RS00095 0.49 -0.9
Or see this region's nucleotide sequence