Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS21420

Experiment: Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Norland
4,877,003	+				+0.4
4,877,047	-				+0.7
4,877,061	+				-0.6
4,877,061	+				-2.6
4,877,061	+				+1.8
4,877,061	+				+0.0
4,877,061	+				-1.8
4,877,061	+				+0.8
4,877,061	+				+2.6
4,877,061	+				-2.2
4,877,061	+				+0.4
4,877,061	+				-0.1
4,877,062	-				+1.3
4,877,062	-				-0.0
4,877,062	-				-1.6
4,877,062	-				+2.8
4,877,062	-				-0.8
4,877,062	-				+2.8
4,877,062	-				-0.2
4,877,062	-				+0.8
4,877,062	-				-1.9
4,877,062	-				-0.4
4,877,062	-				-1.5
4,877,062	-				+0.4
4,877,268	-		DDA3937_RS21415	0.24	+0.4
4,877,276	+		DDA3937_RS21415	0.26	-1.0
4,877,388	-		DDA3937_RS21415	0.47	+0.9
4,877,402	+		DDA3937_RS21415	0.49	+1.2
4,877,402	+		DDA3937_RS21415	0.49	-0.4
4,877,402	+		DDA3937_RS21415	0.49	-0.4
4,877,403	-		DDA3937_RS21415	0.49	-2.0
4,877,403	-		DDA3937_RS21415	0.49	-0.5
4,877,403	-		DDA3937_RS21415	0.49	-0.1
4,877,403	-		DDA3937_RS21415	0.49	-0.1
4,877,403	-		DDA3937_RS21415	0.49	+0.4
4,877,423	-		DDA3937_RS21415	0.53	-0.9
4,877,423	-		DDA3937_RS21415	0.53	+1.3
4,877,513	+		DDA3937_RS21415	0.70	-0.8
4,877,513	+		DDA3937_RS21415	0.70	-0.6
4,877,513	+		DDA3937_RS21415	0.70	+0.5
4,877,514	-		DDA3937_RS21415	0.70	+0.8
4,877,557	+		DDA3937_RS21415	0.78	+1.3
4,877,557	+		DDA3937_RS21415	0.78	-0.4
4,877,558	-		DDA3937_RS21415	0.78	-0.5
4,877,558	-		DDA3937_RS21415	0.78	-0.6
4,877,563	+		DDA3937_RS21415	0.79	-0.4
4,877,564	-		DDA3937_RS21415	0.80	-2.7
4,877,678	+				-0.2
4,877,678	+				-0.7
4,877,757	+				-0.1
4,877,757	+				+0.4
4,877,758	-				-1.2
4,877,758	-				+0.0
4,877,758	-				-0.1
4,877,758	-				+0.2
4,877,758	-				-2.0
4,877,780	-				-0.2
4,877,799	+				-0.5
4,877,800	-				-2.6
4,877,818	+				-1.1
4,877,819	-				-0.7
4,877,819	-				-1.3
4,877,819	-				+1.4
4,877,819	-				+0.2
4,877,837	+				-2.5
4,877,838	-				-1.2
4,877,838	-				-1.1
4,877,841	+				-0.5
4,877,879	+				+0.2
4,877,879	+				+1.1
4,877,879	+				+0.9
4,877,879	+				+1.2
4,877,879	+				+0.5
4,877,880	-				+1.5
4,877,880	-				+0.4
4,877,880	-				-1.1
4,877,880	-				+0.4
4,877,916	+				-1.6
4,877,916	+				+0.4
4,877,916	+				-2.0
4,877,916	+				+0.7
4,877,917	-				+0.4
4,877,917	-				+0.7
4,877,932	-				+1.2
4,877,971	+				+0.6
4,877,971	+				-1.1
4,877,971	+				-2.2
4,877,972	-				-1.4
4,877,972	-				-1.8
4,878,125	+		DDA3937_RS21420	0.21	-0.4
4,878,125	+		DDA3937_RS21420	0.21	-2.2
4,878,126	-		DDA3937_RS21420	0.21	+0.4
4,878,393	+		DDA3937_RS21420	0.57	-0.7
4,878,393	+		DDA3937_RS21420	0.57	-1.5
4,878,394	-		DDA3937_RS21420	0.57	-0.4
4,878,394	-		DDA3937_RS21420	0.57	-0.6
4,878,400	+		DDA3937_RS21420	0.58	-0.9
4,878,400	+		DDA3937_RS21420	0.58	-0.9
4,878,400	+		DDA3937_RS21420	0.58	-1.5
4,878,400	+		DDA3937_RS21420	0.58	+0.9
4,878,400	+		DDA3937_RS21420	0.58	-1.4
4,878,401	-		DDA3937_RS21420	0.58	-2.3
4,878,401	-		DDA3937_RS21420	0.58	-0.7
4,878,497	-		DDA3937_RS21420	0.71	-0.9
4,878,497	-		DDA3937_RS21420	0.71	-1.0
4,878,533	+		DDA3937_RS21420	0.76	-0.4
4,878,534	-		DDA3937_RS21420	0.76	+0.4
4,878,590	+		DDA3937_RS21420	0.83	-0.6
4,878,590	+		DDA3937_RS21420	0.83	-0.4
4,878,591	-		DDA3937_RS21420	0.84	-0.4
4,878,591	-		DDA3937_RS21420	0.84	+0.9
4,878,591	-		DDA3937_RS21420	0.84	-1.8
4,878,591	-		DDA3937_RS21420	0.84	-0.8
4,878,591	-		DDA3937_RS21420	0.84	-0.2
4,878,602	+		DDA3937_RS21420	0.85	-0.4
4,878,656	+				-1.1
4,878,656	+				-1.1
4,878,657	-				+0.2
4,878,657	-				-0.4
4,878,658	+				-1.1
4,878,710	+				-0.9
4,878,711	-				+1.0
4,878,884	-				+5.4
4,878,952	+		DDA3937_RS21425	0.10	-0.8
4,878,953	-		DDA3937_RS21425	0.10	+0.0
4,878,953	-		DDA3937_RS21425	0.10	+0.4
4,878,955	+		DDA3937_RS21425	0.10	-0.6
4,878,956	-		DDA3937_RS21425	0.11	-1.1
4,878,956	-		DDA3937_RS21425	0.11	+0.5
4,878,956	-		DDA3937_RS21425	0.11	-0.3
4,878,956	-		DDA3937_RS21425	0.11	-0.2
4,878,956	-		DDA3937_RS21425	0.11	-0.1
4,879,062	+		DDA3937_RS21425	0.18	-0.0
4,879,062	+		DDA3937_RS21425	0.18	-0.3
4,879,087	-		DDA3937_RS21425	0.20	-0.6
4,879,206	+		DDA3937_RS21425	0.29	+1.5
4,879,206	+		DDA3937_RS21425	0.29	-0.1
4,879,206	+		DDA3937_RS21425	0.29	-1.2
4,879,206	+		DDA3937_RS21425	0.29	+0.5
4,879,207	-		DDA3937_RS21425	0.29	+0.2
4,879,207	-		DDA3937_RS21425	0.29	+2.5
4,879,207	-		DDA3937_RS21425	0.29	+0.7
4,879,207	-		DDA3937_RS21425	0.29	-0.9
4,879,207	-		DDA3937_RS21425	0.29	-1.4
4,879,207	-		DDA3937_RS21425	0.29	-0.1
4,879,259	-		DDA3937_RS21425	0.33	-0.5
4,879,266	+		DDA3937_RS21425	0.34	-0.1
4,879,266	+		DDA3937_RS21425	0.34	+2.9
4,879,267	-		DDA3937_RS21425	0.34	+0.1
4,879,267	-		DDA3937_RS21425	0.34	+2.9
4,879,267	-		DDA3937_RS21425	0.34	-0.1
4,879,267	-		DDA3937_RS21425	0.34	+1.2
4,879,267	-		DDA3937_RS21425	0.34	-1.4
4,879,267	-		DDA3937_RS21425	0.34	-1.4
4,879,481	+		DDA3937_RS21425	0.50	-1.1
4,879,481	+		DDA3937_RS21425	0.50	-0.2
4,879,482	-		DDA3937_RS21425	0.50	-0.5
4,879,547	-		DDA3937_RS21425	0.55	-0.2
4,879,603	+		DDA3937_RS21425	0.59	-2.2
4,879,603	+		DDA3937_RS21425	0.59	-0.4
4,879,604	-		DDA3937_RS21425	0.59	-3.1
4,879,681	+		DDA3937_RS21425	0.65	-2.7
4,879,681	+		DDA3937_RS21425	0.65	+0.1
4,879,681	+		DDA3937_RS21425	0.65	-0.8
4,879,682	-		DDA3937_RS21425	0.65	-0.9
4,879,682	-		DDA3937_RS21425	0.65	+0.8
4,879,688	-		DDA3937_RS21425	0.65	-1.2
4,879,688	-		DDA3937_RS21425	0.65	+1.8
4,879,688	-		DDA3937_RS21425	0.65	+0.1