Experiment: Norland
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS21165 and DDA3937_RS21170 are separated by 5 nucleotides DDA3937_RS21170 and DDA3937_RS21175 are separated by 101 nucleotides DDA3937_RS21175 and DDA3937_RS21180 are separated by 104 nucleotides
DDA3937_RS21165: DDA3937_RS21165 - formyl-CoA transferase, at 4,818,006 to 4,819,283
_RS21165
DDA3937_RS21170: DDA3937_RS21170 - PAS domain S-box protein, at 4,819,289 to 4,819,720
_RS21170
DDA3937_RS21175: DDA3937_RS21175 - formyl-CoA transferase, at 4,819,822 to 4,821,069
_RS21175
DDA3937_RS21180: DDA3937_RS21180 - MFS transporter, at 4,821,174 to 4,822,436
_RS21180
Position (kb) 4819
4820
4821
4822 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4818.825 kb on + strand, within DDA3937_RS21165 at 4818.825 kb on + strand, within DDA3937_RS21165 at 4818.825 kb on + strand, within DDA3937_RS21165 at 4818.825 kb on + strand, within DDA3937_RS21165 at 4818.825 kb on + strand, within DDA3937_RS21165 at 4818.825 kb on + strand, within DDA3937_RS21165 at 4818.825 kb on + strand, within DDA3937_RS21165 at 4818.826 kb on - strand, within DDA3937_RS21165 at 4818.826 kb on - strand, within DDA3937_RS21165 at 4818.826 kb on - strand, within DDA3937_RS21165 at 4818.826 kb on - strand, within DDA3937_RS21165 at 4818.826 kb on - strand, within DDA3937_RS21165 at 4818.831 kb on + strand, within DDA3937_RS21165 at 4818.831 kb on + strand, within DDA3937_RS21165 at 4818.831 kb on + strand, within DDA3937_RS21165 at 4818.832 kb on - strand, within DDA3937_RS21165 at 4818.841 kb on + strand, within DDA3937_RS21165 at 4818.841 kb on + strand, within DDA3937_RS21165 at 4818.842 kb on - strand, within DDA3937_RS21165 at 4818.877 kb on + strand, within DDA3937_RS21165 at 4818.910 kb on - strand, within DDA3937_RS21165 at 4818.910 kb on - strand, within DDA3937_RS21165 at 4818.910 kb on - strand, within DDA3937_RS21165 at 4818.910 kb on - strand, within DDA3937_RS21165 at 4818.910 kb on - strand, within DDA3937_RS21165 at 4818.912 kb on - strand, within DDA3937_RS21165 at 4819.012 kb on - strand, within DDA3937_RS21165 at 4819.012 kb on - strand, within DDA3937_RS21165 at 4819.085 kb on + strand, within DDA3937_RS21165 at 4819.086 kb on - strand, within DDA3937_RS21165 at 4819.237 kb on - strand at 4819.281 kb on + strand at 4819.281 kb on + strand at 4819.281 kb on + strand at 4819.281 kb on + strand at 4819.281 kb on + strand at 4819.281 kb on + strand at 4819.282 kb on - strand at 4819.282 kb on - strand at 4819.282 kb on - strand at 4819.324 kb on - strand at 4819.324 kb on - strand at 4819.324 kb on - strand at 4819.336 kb on + strand, within DDA3937_RS21170 at 4819.337 kb on - strand, within DDA3937_RS21170 at 4819.339 kb on + strand, within DDA3937_RS21170 at 4819.339 kb on + strand, within DDA3937_RS21170 at 4819.340 kb on - strand, within DDA3937_RS21170 at 4819.340 kb on - strand, within DDA3937_RS21170 at 4819.525 kb on - strand, within DDA3937_RS21170 at 4819.525 kb on - strand, within DDA3937_RS21170 at 4819.718 kb on + strand at 4819.718 kb on + strand at 4819.792 kb on + strand at 4819.792 kb on + strand at 4819.792 kb on + strand at 4819.793 kb on - strand at 4819.802 kb on + strand at 4819.802 kb on + strand at 4819.802 kb on + strand at 4819.802 kb on + strand at 4819.802 kb on + strand at 4819.802 kb on + strand at 4819.803 kb on - strand at 4819.803 kb on - strand at 4819.803 kb on - strand at 4819.851 kb on + strand at 4819.860 kb on + strand at 4819.860 kb on + strand at 4819.860 kb on + strand at 4819.860 kb on + strand at 4819.861 kb on - strand at 4819.868 kb on + strand at 4819.868 kb on + strand at 4819.868 kb on + strand at 4819.868 kb on + strand at 4819.868 kb on + strand at 4819.869 kb on - strand at 4819.869 kb on - strand at 4819.869 kb on - strand at 4819.869 kb on - strand at 4819.869 kb on - strand at 4819.869 kb on - strand at 4819.869 kb on - strand at 4819.869 kb on - strand at 4819.869 kb on - strand at 4819.869 kb on - strand at 4819.869 kb on - strand at 4819.869 kb on - strand at 4819.869 kb on - strand at 4819.869 kb on - strand at 4819.869 kb on - strand at 4819.967 kb on + strand, within DDA3937_RS21175 at 4819.967 kb on + strand, within DDA3937_RS21175 at 4819.967 kb on + strand, within DDA3937_RS21175 at 4819.996 kb on + strand, within DDA3937_RS21175 at 4819.996 kb on + strand, within DDA3937_RS21175 at 4820.002 kb on - strand, within DDA3937_RS21175 at 4820.430 kb on - strand, within DDA3937_RS21175 at 4820.478 kb on + strand, within DDA3937_RS21175 at 4820.486 kb on + strand, within DDA3937_RS21175 at 4820.497 kb on + strand, within DDA3937_RS21175 at 4820.498 kb on - strand, within DDA3937_RS21175 at 4820.535 kb on - strand, within DDA3937_RS21175 at 4820.535 kb on - strand, within DDA3937_RS21175 at 4820.577 kb on + strand, within DDA3937_RS21175 at 4820.577 kb on + strand, within DDA3937_RS21175 at 4820.583 kb on + strand, within DDA3937_RS21175 at 4820.583 kb on + strand, within DDA3937_RS21175 at 4820.617 kb on + strand, within DDA3937_RS21175 at 4820.618 kb on - strand, within DDA3937_RS21175 at 4820.618 kb on - strand, within DDA3937_RS21175 at 4820.623 kb on + strand, within DDA3937_RS21175 at 4820.624 kb on - strand, within DDA3937_RS21175 at 4820.624 kb on - strand, within DDA3937_RS21175 at 4820.624 kb on - strand, within DDA3937_RS21175 at 4820.732 kb on + strand, within DDA3937_RS21175 at 4820.732 kb on + strand, within DDA3937_RS21175 at 4820.732 kb on + strand, within DDA3937_RS21175 at 4820.733 kb on - strand, within DDA3937_RS21175 at 4820.778 kb on + strand, within DDA3937_RS21175 at 4820.778 kb on + strand, within DDA3937_RS21175 at 4820.778 kb on + strand, within DDA3937_RS21175 at 4820.779 kb on - strand, within DDA3937_RS21175 at 4820.779 kb on - strand, within DDA3937_RS21175 at 4820.809 kb on + strand, within DDA3937_RS21175 at 4820.809 kb on + strand, within DDA3937_RS21175 at 4820.810 kb on - strand, within DDA3937_RS21175 at 4820.810 kb on - strand, within DDA3937_RS21175 at 4820.810 kb on - strand, within DDA3937_RS21175 at 4820.917 kb on + strand, within DDA3937_RS21175 at 4820.918 kb on - strand, within DDA3937_RS21175 at 4821.023 kb on - strand at 4821.086 kb on - strand at 4821.091 kb on + strand at 4821.150 kb on + strand at 4821.150 kb on + strand at 4821.150 kb on + strand at 4821.150 kb on + strand at 4821.150 kb on + strand at 4821.151 kb on - strand at 4821.151 kb on - strand at 4821.151 kb on - strand at 4821.235 kb on + strand at 4821.319 kb on + strand, within DDA3937_RS21180 at 4821.319 kb on + strand, within DDA3937_RS21180 at 4821.319 kb on + strand, within DDA3937_RS21180 at 4821.320 kb on - strand, within DDA3937_RS21180 at 4821.320 kb on - strand, within DDA3937_RS21180 at 4821.320 kb on - strand, within DDA3937_RS21180 at 4821.390 kb on - strand, within DDA3937_RS21180 at 4821.474 kb on + strand, within DDA3937_RS21180 at 4821.474 kb on + strand, within DDA3937_RS21180 at 4821.474 kb on + strand, within DDA3937_RS21180 at 4821.474 kb on + strand, within DDA3937_RS21180 at 4821.474 kb on + strand, within DDA3937_RS21180 at 4821.475 kb on - strand, within DDA3937_RS21180 at 4821.475 kb on - strand, within DDA3937_RS21180 at 4821.475 kb on - strand, within DDA3937_RS21180 at 4821.475 kb on - strand, within DDA3937_RS21180 at 4821.475 kb on - strand, within DDA3937_RS21180 at 4821.475 kb on - strand, within DDA3937_RS21180 at 4821.521 kb on + strand at 4821.522 kb on - strand, within DDA3937_RS21180 at 4821.522 kb on - strand, within DDA3937_RS21180 at 4821.665 kb on + strand, within DDA3937_RS21180 at 4821.665 kb on + strand, within DDA3937_RS21180 at 4821.717 kb on - strand, within DDA3937_RS21180 at 4821.717 kb on - strand, within DDA3937_RS21180 at 4821.860 kb on + strand, within DDA3937_RS21180 at 4821.861 kb on - strand, within DDA3937_RS21180 at 4821.895 kb on + strand, within DDA3937_RS21180 at 4821.895 kb on + strand, within DDA3937_RS21180 at 4821.895 kb on + strand, within DDA3937_RS21180 at 4821.895 kb on + strand, within DDA3937_RS21180 at 4821.895 kb on + strand, within DDA3937_RS21180 at 4821.895 kb on + strand, within DDA3937_RS21180 at 4821.895 kb on + strand, within DDA3937_RS21180 at 4821.896 kb on - strand, within DDA3937_RS21180 at 4821.896 kb on - strand at 4821.896 kb on - strand, within DDA3937_RS21180 at 4821.896 kb on - strand, within DDA3937_RS21180 at 4821.896 kb on - strand, within DDA3937_RS21180 at 4821.896 kb on - strand, within DDA3937_RS21180 at 4821.896 kb on - strand, within DDA3937_RS21180
Per-strain Table
Position Strand Gene LocusTag Fraction Norland remove 4,818,825 + DDA3937_RS21165 0.64 -1.1 4,818,825 + DDA3937_RS21165 0.64 -0.3 4,818,825 + DDA3937_RS21165 0.64 +0.1 4,818,825 + DDA3937_RS21165 0.64 -1.8 4,818,825 + DDA3937_RS21165 0.64 -0.6 4,818,825 + DDA3937_RS21165 0.64 +0.2 4,818,825 + DDA3937_RS21165 0.64 -1.2 4,818,826 - DDA3937_RS21165 0.64 -0.4 4,818,826 - DDA3937_RS21165 0.64 -0.1 4,818,826 - DDA3937_RS21165 0.64 +0.9 4,818,826 - DDA3937_RS21165 0.64 -1.9 4,818,826 - DDA3937_RS21165 0.64 -2.0 4,818,831 + DDA3937_RS21165 0.65 +0.6 4,818,831 + DDA3937_RS21165 0.65 -0.6 4,818,831 + DDA3937_RS21165 0.65 -1.6 4,818,832 - DDA3937_RS21165 0.65 +1.7 4,818,841 + DDA3937_RS21165 0.65 +0.4 4,818,841 + DDA3937_RS21165 0.65 +0.2 4,818,842 - DDA3937_RS21165 0.65 -1.7 4,818,877 + DDA3937_RS21165 0.68 -0.9 4,818,910 - DDA3937_RS21165 0.71 -0.4 4,818,910 - DDA3937_RS21165 0.71 +0.6 4,818,910 - DDA3937_RS21165 0.71 -1.4 4,818,910 - DDA3937_RS21165 0.71 -2.3 4,818,910 - DDA3937_RS21165 0.71 +0.3 4,818,912 - DDA3937_RS21165 0.71 +1.9 4,819,012 - DDA3937_RS21165 0.79 +0.4 4,819,012 - DDA3937_RS21165 0.79 -2.2 4,819,085 + DDA3937_RS21165 0.84 -0.4 4,819,086 - DDA3937_RS21165 0.85 +0.4 4,819,237 - -0.9 4,819,281 + -0.8 4,819,281 + -0.2 4,819,281 + +1.0 4,819,281 + -0.3 4,819,281 + -1.6 4,819,281 + -0.4 4,819,282 - -2.6 4,819,282 - -0.1 4,819,282 - -1.2 4,819,324 - +0.0 4,819,324 - +0.8 4,819,324 - -1.2 4,819,336 + DDA3937_RS21170 0.11 +0.2 4,819,337 - DDA3937_RS21170 0.11 +0.5 4,819,339 + DDA3937_RS21170 0.12 -1.9 4,819,339 + DDA3937_RS21170 0.12 -0.2 4,819,340 - DDA3937_RS21170 0.12 -0.6 4,819,340 - DDA3937_RS21170 0.12 -0.9 4,819,525 - DDA3937_RS21170 0.55 -1.2 4,819,525 - DDA3937_RS21170 0.55 +0.3 4,819,718 + -1.2 4,819,718 + +2.6 4,819,792 + +0.7 4,819,792 + -1.4 4,819,792 + +0.9 4,819,793 - -2.2 4,819,802 + +2.5 4,819,802 + -1.0 4,819,802 + -0.6 4,819,802 + -0.3 4,819,802 + -0.1 4,819,802 + -0.1 4,819,803 - -1.4 4,819,803 - -1.2 4,819,803 - -1.6 4,819,851 + -1.8 4,819,860 + +1.5 4,819,860 + -0.1 4,819,860 + +0.1 4,819,860 + -1.5 4,819,861 - -2.3 4,819,868 + -0.2 4,819,868 + -0.9 4,819,868 + -0.4 4,819,868 + +0.0 4,819,868 + -0.5 4,819,869 - -3.3 4,819,869 - -0.9 4,819,869 - -0.1 4,819,869 - -2.1 4,819,869 - -1.2 4,819,869 - +1.4 4,819,869 - -1.0 4,819,869 - +2.5 4,819,869 - -0.7 4,819,869 - -0.3 4,819,869 - -1.5 4,819,869 - -1.6 4,819,869 - +0.2 4,819,869 - -0.6 4,819,869 - -0.1 4,819,967 + DDA3937_RS21175 0.12 -0.6 4,819,967 + DDA3937_RS21175 0.12 +0.2 4,819,967 + DDA3937_RS21175 0.12 -1.4 4,819,996 + DDA3937_RS21175 0.14 -2.0 4,819,996 + DDA3937_RS21175 0.14 -1.6 4,820,002 - DDA3937_RS21175 0.14 -0.0 4,820,430 - DDA3937_RS21175 0.49 -0.3 4,820,478 + DDA3937_RS21175 0.53 -0.5 4,820,486 + DDA3937_RS21175 0.53 -0.9 4,820,497 + DDA3937_RS21175 0.54 +0.6 4,820,498 - DDA3937_RS21175 0.54 +0.6 4,820,535 - DDA3937_RS21175 0.57 +0.0 4,820,535 - DDA3937_RS21175 0.57 -1.2 4,820,577 + DDA3937_RS21175 0.60 +0.4 4,820,577 + DDA3937_RS21175 0.60 +0.8 4,820,583 + DDA3937_RS21175 0.61 -1.3 4,820,583 + DDA3937_RS21175 0.61 +0.9 4,820,617 + DDA3937_RS21175 0.64 -0.2 4,820,618 - DDA3937_RS21175 0.64 -0.5 4,820,618 - DDA3937_RS21175 0.64 -2.6 4,820,623 + DDA3937_RS21175 0.64 +0.0 4,820,624 - DDA3937_RS21175 0.64 +0.0 4,820,624 - DDA3937_RS21175 0.64 -0.1 4,820,624 - DDA3937_RS21175 0.64 +0.4 4,820,732 + DDA3937_RS21175 0.73 -0.1 4,820,732 + DDA3937_RS21175 0.73 -0.4 4,820,732 + DDA3937_RS21175 0.73 -1.1 4,820,733 - DDA3937_RS21175 0.73 -0.3 4,820,778 + DDA3937_RS21175 0.77 +0.9 4,820,778 + DDA3937_RS21175 0.77 +0.3 4,820,778 + DDA3937_RS21175 0.77 -1.6 4,820,779 - DDA3937_RS21175 0.77 -1.2 4,820,779 - DDA3937_RS21175 0.77 -1.5 4,820,809 + DDA3937_RS21175 0.79 -1.7 4,820,809 + DDA3937_RS21175 0.79 -3.1 4,820,810 - DDA3937_RS21175 0.79 -0.3 4,820,810 - DDA3937_RS21175 0.79 +0.0 4,820,810 - DDA3937_RS21175 0.79 -0.4 4,820,917 + DDA3937_RS21175 0.88 +0.7 4,820,918 - DDA3937_RS21175 0.88 +0.6 4,821,023 - -0.7 4,821,086 - -0.3 4,821,091 + +2.9 4,821,150 + +0.8 4,821,150 + +0.2 4,821,150 + -1.3 4,821,150 + -0.5 4,821,150 + -0.7 4,821,151 - -0.1 4,821,151 - -0.3 4,821,151 - +3.7 4,821,235 + -0.3 4,821,319 + DDA3937_RS21180 0.11 -1.3 4,821,319 + DDA3937_RS21180 0.11 -0.6 4,821,319 + DDA3937_RS21180 0.11 +0.2 4,821,320 - DDA3937_RS21180 0.12 -2.3 4,821,320 - DDA3937_RS21180 0.12 -0.4 4,821,320 - DDA3937_RS21180 0.12 +1.6 4,821,390 - DDA3937_RS21180 0.17 -1.2 4,821,474 + DDA3937_RS21180 0.24 -0.2 4,821,474 + DDA3937_RS21180 0.24 -3.1 4,821,474 + DDA3937_RS21180 0.24 +0.4 4,821,474 + DDA3937_RS21180 0.24 -0.8 4,821,474 + DDA3937_RS21180 0.24 -0.8 4,821,475 - DDA3937_RS21180 0.24 -0.9 4,821,475 - DDA3937_RS21180 0.24 -1.2 4,821,475 - DDA3937_RS21180 0.24 -0.2 4,821,475 - DDA3937_RS21180 0.24 -0.6 4,821,475 - DDA3937_RS21180 0.24 -0.3 4,821,475 - DDA3937_RS21180 0.24 -2.0 4,821,521 + +0.4 4,821,522 - DDA3937_RS21180 0.28 +0.4 4,821,522 - DDA3937_RS21180 0.28 -1.1 4,821,665 + DDA3937_RS21180 0.39 -0.2 4,821,665 + DDA3937_RS21180 0.39 -0.2 4,821,717 - DDA3937_RS21180 0.43 +0.4 4,821,717 - DDA3937_RS21180 0.43 +1.3 4,821,860 + DDA3937_RS21180 0.54 -0.8 4,821,861 - DDA3937_RS21180 0.54 -0.4 4,821,895 + DDA3937_RS21180 0.57 +1.4 4,821,895 + DDA3937_RS21180 0.57 -1.5 4,821,895 + DDA3937_RS21180 0.57 +0.7 4,821,895 + DDA3937_RS21180 0.57 -0.6 4,821,895 + DDA3937_RS21180 0.57 +0.1 4,821,895 + DDA3937_RS21180 0.57 -2.8 4,821,895 + DDA3937_RS21180 0.57 +1.0 4,821,896 - DDA3937_RS21180 0.57 +1.1 4,821,896 - +0.9 4,821,896 - DDA3937_RS21180 0.57 -0.5 4,821,896 - DDA3937_RS21180 0.57 +0.1 4,821,896 - DDA3937_RS21180 0.57 -0.4 4,821,896 - DDA3937_RS21180 0.57 -0.4 4,821,896 - DDA3937_RS21180 0.57 +0.6
Or see this region's nucleotide sequence