Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS16670

Experiment: Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Norland
3,792,824	-				+0.1
3,792,900	-		DDA3937_RS16665	0.13	+0.3
3,792,922	+		DDA3937_RS16665	0.15	+2.0
3,792,922	+		DDA3937_RS16665	0.15	-2.2
3,792,923	-		DDA3937_RS16665	0.16	-0.7
3,792,923	-		DDA3937_RS16665	0.16	-0.8
3,792,989	+		DDA3937_RS16665	0.23	-0.2
3,792,989	+		DDA3937_RS16665	0.23	+0.6
3,792,989	+		DDA3937_RS16665	0.23	-1.4
3,792,990	-		DDA3937_RS16665	0.24	+0.0
3,792,990	-		DDA3937_RS16665	0.24	-1.5
3,792,990	-		DDA3937_RS16665	0.24	-0.0
3,792,990	-		DDA3937_RS16665	0.24	+0.0
3,792,990	-		DDA3937_RS16665	0.24	+1.2
3,793,339	+		DDA3937_RS16665	0.65	+0.3
3,793,340	-		DDA3937_RS16665	0.65	+2.2
3,793,340	-		DDA3937_RS16665	0.65	-0.4
3,793,524	-		DDA3937_RS16665	0.87	-0.2
3,793,524	-		DDA3937_RS16665	0.87	-0.3
3,793,525	+		DDA3937_RS16665	0.87	+0.0
3,793,525	+		DDA3937_RS16665	0.87	-1.1
3,793,525	+		DDA3937_RS16665	0.87	-0.4
3,793,526	-		DDA3937_RS16665	0.87	-2.1
3,793,526	-		DDA3937_RS16665	0.87	+0.5
3,793,526	-		DDA3937_RS16665	0.87	+1.1
3,793,529	+		DDA3937_RS16665	0.88	-0.8
3,793,529	+		DDA3937_RS16665	0.88	-1.0
3,793,529	+		DDA3937_RS16665	0.88	+3.3
3,793,529	+		DDA3937_RS16665	0.88	-1.5
3,793,529	+		DDA3937_RS16665	0.88	+0.5
3,793,529	+		DDA3937_RS16665	0.88	-2.8
3,793,529	+		DDA3937_RS16665	0.88	-2.2
3,793,530	-		DDA3937_RS16665	0.88	+1.6
3,793,530	-		DDA3937_RS16665	0.88	-1.1
3,793,530	-		DDA3937_RS16665	0.88	+0.1
3,793,530	-		DDA3937_RS16665	0.88	-0.1
3,793,556	+				-1.8
3,793,557	-				-2.8
3,793,557	-				-0.4
3,793,597	+				+0.0
3,793,597	+				-1.0
3,793,660	+				+0.9
3,793,697	+				-1.4
3,793,697	+				+0.8
3,793,697	+				-0.3
3,793,697	+				+0.5
3,793,697	+				+0.3
3,793,697	+				-0.1
3,793,697	+				+0.4
3,793,697	+				-0.0
3,793,698	-				+2.7
3,793,698	-				-1.0
3,793,698	-				+0.4
3,793,698	-				+0.0
3,793,698	-				+0.7
3,793,698	-				+1.3
3,793,698	-				-0.8
3,793,698	-				-0.6
3,793,698	-				-2.1
3,793,698	-				+0.6
3,793,702	+				+2.0
3,793,702	+				-1.0
3,793,702	+				-1.5
3,793,702	+				-0.7
3,793,702	+				+1.5
3,793,702	+				-0.4
3,793,702	+				-1.0
3,793,702	+				-0.0
3,793,702	+				+3.1
3,793,702	+				+1.4
3,793,702	+				-0.7
3,793,702	+				+0.9
3,793,702	+				+0.8
3,793,702	+				+0.2
3,793,703	-				+1.3
3,793,703	-				-2.4
3,793,703	-				+0.6
3,793,703	-				-0.5
3,793,703	-				-0.2
3,793,703	-				+0.6
3,793,703	-				-0.2
3,793,703	-				+1.6
3,793,703	-				+1.6
3,793,703	-				+0.7
3,793,703	-				+2.6
3,793,703	-				+3.4
3,793,704	+				-1.6
3,793,705	-				+0.5
3,793,705	-				+0.8
3,793,754	-				+1.0
3,793,775	+				-0.2
3,793,775	+				-0.1
3,793,776	-				-1.1
3,793,787	+				-0.5
3,793,787	+				+0.9
3,793,787	+				+0.6
3,793,788	-				+0.2
3,793,788	-				+0.7
3,793,788	-				-0.6
3,793,788	-				-0.3
3,793,788	-				-0.2
3,793,790	+				+0.0
3,793,790	+				+0.1
3,793,791	-				-0.0
3,793,791	-				-1.7
3,793,869	+				-0.2
3,793,869	+				+4.8
3,793,869	+				+0.6
3,793,869	+				-0.8
3,793,870	-				-0.4
3,793,870	-				+0.5
3,794,051	+		DDA3937_RS16670	0.16	-0.5
3,794,051	+		DDA3937_RS16670	0.16	-0.3
3,794,051	+		DDA3937_RS16670	0.16	+0.2
3,794,051	+		DDA3937_RS16670	0.16	+1.7
3,794,051	+		DDA3937_RS16670	0.16	-0.7
3,794,051	+		DDA3937_RS16670	0.16	-0.4
3,794,051	+		DDA3937_RS16670	0.16	-0.5
3,794,052	-		DDA3937_RS16670	0.16	+0.7
3,794,052	-		DDA3937_RS16670	0.16	-0.0
3,794,052	-		DDA3937_RS16670	0.16	+1.2
3,794,052	-		DDA3937_RS16670	0.16	-1.5
3,794,052	-		DDA3937_RS16670	0.16	-1.2
3,794,053	+		DDA3937_RS16670	0.16	-1.1
3,794,053	+		DDA3937_RS16670	0.16	-0.8
3,794,053	+		DDA3937_RS16670	0.16	-0.1
3,794,053	+		DDA3937_RS16670	0.16	-3.1
3,794,053	+		DDA3937_RS16670	0.16	-0.4
3,794,053	+		DDA3937_RS16670	0.16	+0.3
3,794,053	+		DDA3937_RS16670	0.16	+0.2
3,794,053	+		DDA3937_RS16670	0.16	-0.1
3,794,054	-		DDA3937_RS16670	0.16	+1.1
3,794,054	-		DDA3937_RS16670	0.16	-0.7
3,794,054	-		DDA3937_RS16670	0.16	+1.4
3,794,054	-		DDA3937_RS16670	0.16	-0.6
3,794,054	-		DDA3937_RS16670	0.16	+0.2
3,794,054	-		DDA3937_RS16670	0.16	-1.0
3,794,054	-		DDA3937_RS16670	0.16	+0.8
3,794,054	-		DDA3937_RS16670	0.16	+0.0
3,794,054	-		DDA3937_RS16670	0.16	+0.5
3,794,303	+		DDA3937_RS16670	0.32	+0.3
3,794,303	+		DDA3937_RS16670	0.32	+0.2
3,794,303	+		DDA3937_RS16670	0.32	+1.6
3,794,304	-		DDA3937_RS16670	0.32	+1.9
3,794,307	+		DDA3937_RS16670	0.32	+0.1
3,794,307	+		DDA3937_RS16670	0.32	-1.2
3,794,307	+		DDA3937_RS16670	0.32	-0.8
3,794,308	-		DDA3937_RS16670	0.32	+3.8
3,794,407	+		DDA3937_RS16670	0.38	-1.0
3,794,639	+		DDA3937_RS16670	0.53	-2.5
3,794,639	+		DDA3937_RS16670	0.53	-0.2
3,794,640	-		DDA3937_RS16670	0.53	+0.0
3,794,640	-		DDA3937_RS16670	0.53	-0.6
3,794,640	-		DDA3937_RS16670	0.53	+0.9
3,794,640	-		DDA3937_RS16670	0.53	-0.8
3,794,640	-		DDA3937_RS16670	0.53	-0.2
3,794,689	+		DDA3937_RS16670	0.56	+1.3
3,794,689	+		DDA3937_RS16670	0.56	+0.7
3,794,689	+		DDA3937_RS16670	0.56	-1.8
3,794,689	+		DDA3937_RS16670	0.56	-0.2
3,794,690	-		DDA3937_RS16670	0.56	+2.2
3,794,690	-		DDA3937_RS16670	0.56	+1.0
3,794,690	-		DDA3937_RS16670	0.56	-1.7
3,794,690	-		DDA3937_RS16670	0.56	+1.3
3,794,690	-		DDA3937_RS16670	0.56	-0.1
3,794,882	-		DDA3937_RS16670	0.68	-0.4
3,794,975	+		DDA3937_RS16670	0.74	-0.2
3,794,976	-		DDA3937_RS16670	0.74	-2.6
3,795,119	+		DDA3937_RS16670	0.83	-0.6
3,795,246	+				-2.2
3,795,246	+				+0.9
3,795,382	+				-0.4
3,795,382	+				-1.8
3,795,383	-				-1.0
3,795,391	+				-1.0
3,795,391	+				+0.0
3,795,391	+				-0.0
3,795,392	-				-1.5
3,795,392	-				+0.1
3,795,400	+				-1.0
3,795,401	-				+1.9
3,795,429	+				+0.1
3,795,430	-				+3.3
3,795,438	+				-0.1
3,795,438	+				-1.4
3,795,438	+				-0.5
3,795,439	-				+0.3
3,795,439	-				+5.4
3,795,469	+		DDA3937_RS16675	0.20	-0.6
3,795,614	+				-0.1
3,795,614	+				+0.6
3,795,615	-				-0.7
3,795,615	-				+0.3
3,795,615	-				+0.6
3,795,750	+				+1.9
3,795,750	+				-1.1
3,795,773	+		DDA3937_RS16680	0.11	+0.0
3,795,773	+		DDA3937_RS16680	0.11	+0.4
3,795,773	+				+1.6
3,795,774	-		DDA3937_RS16680	0.11	+0.5
3,795,850	-		DDA3937_RS16680	0.16	-1.2
3,796,305	+		DDA3937_RS16680	0.48	+0.9
3,796,305	+		DDA3937_RS16680	0.48	-0.3
3,796,305	+		DDA3937_RS16680	0.48	-0.4
3,796,305	+		DDA3937_RS16680	0.48	+0.8
3,796,305	+		DDA3937_RS16680	0.48	-0.9
3,796,305	+		DDA3937_RS16680	0.48	+1.0
3,796,305	+		DDA3937_RS16680	0.48	+0.3
3,796,305	+		DDA3937_RS16680	0.48	-1.7
3,796,305	+		DDA3937_RS16680	0.48	-1.0
3,796,306	-		DDA3937_RS16680	0.48	-1.1
3,796,306	-		DDA3937_RS16680	0.48	+0.3
3,796,306	-		DDA3937_RS16680	0.48	-0.5
3,796,306	-		DDA3937_RS16680	0.48	-0.3
3,796,306	-		DDA3937_RS16680	0.48	+0.0
3,796,306	-		DDA3937_RS16680	0.48	+1.0
3,796,306	-		DDA3937_RS16680	0.48	-0.3
3,796,306	-		DDA3937_RS16680	0.48	+0.2
3,796,306	-		DDA3937_RS16680	0.48	-0.2
3,796,306	-		DDA3937_RS16680	0.48	-1.4
3,796,306	-		DDA3937_RS16680	0.48	-1.2
3,796,306	-		DDA3937_RS16680	0.48	+2.0
3,796,306	-		DDA3937_RS16680	0.48	+1.4
3,796,306	-				+0.3
3,796,306	-		DDA3937_RS16680	0.48	+2.1
3,796,306	-		DDA3937_RS16680	0.48	+0.2