Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS14995

Experiment: Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Norland
3,440,709	-		DDA3937_RS14990	0.47	+0.5
3,440,844	+		DDA3937_RS14990	0.55	+0.9
3,440,845	-		DDA3937_RS14990	0.55	+1.6
3,440,945	-		DDA3937_RS14990	0.61	+0.0
3,441,103	+		DDA3937_RS14990	0.70	+1.5
3,441,104	-		DDA3937_RS14990	0.70	-0.0
3,441,104	-		DDA3937_RS14990	0.70	-0.8
3,441,136	+		DDA3937_RS14990	0.72	+0.6
3,441,136	+		DDA3937_RS14990	0.72	+0.9
3,441,136	+		DDA3937_RS14990	0.72	-0.3
3,441,137	-		DDA3937_RS14990	0.72	+0.7
3,441,137	-		DDA3937_RS14990	0.72	-1.1
3,441,137	-				+3.7
3,441,137	-		DDA3937_RS14990	0.72	+1.2
3,441,137	-		DDA3937_RS14990	0.72	+0.3
3,441,169	+		DDA3937_RS14990	0.74	+0.3
3,441,169	+		DDA3937_RS14990	0.74	-0.5
3,441,170	-		DDA3937_RS14990	0.74	-0.3
3,441,170	-		DDA3937_RS14990	0.74	-0.2
3,441,199	+		DDA3937_RS14990	0.76	-1.0
3,441,200	-		DDA3937_RS14990	0.76	-0.8
3,441,200	-		DDA3937_RS14990	0.76	-1.7
3,441,200	-		DDA3937_RS14990	0.76	-0.6
3,441,200	-		DDA3937_RS14990	0.76	+1.7
3,441,431	-		DDA3937_RS14990	0.90	-1.8
3,441,590	+				+0.2
3,441,648	-				+0.3
3,441,648	-				-0.8
3,441,648	-				+0.3
3,441,648	-				-0.1
3,441,648	-				+1.5
3,441,658	+				+0.5
3,441,659	-				-1.1
3,441,873	+				-0.8
3,441,874	-		DDA3937_RS14995	0.16	-1.0
3,441,874	-		DDA3937_RS14995	0.16	-2.5
3,441,905	+		DDA3937_RS14995	0.18	-1.1
3,441,920	-		DDA3937_RS14995	0.19	+0.5
3,441,920	-		DDA3937_RS14995	0.19	-0.1
3,441,920	-		DDA3937_RS14995	0.19	+2.5
3,441,920	-		DDA3937_RS14995	0.19	-0.1
3,442,027	-		DDA3937_RS14995	0.26	-2.6
3,442,234	-		DDA3937_RS14995	0.39	-1.3
3,442,287	+		DDA3937_RS14995	0.43	-2.6
3,442,356	+		DDA3937_RS14995	0.47	+0.2
3,443,009	+				-0.1
3,443,009	+		DDA3937_RS14995	0.89	+0.3
3,443,009	+		DDA3937_RS14995	0.89	-1.0
3,443,009	+		DDA3937_RS14995	0.89	-1.2
3,443,111	+				+0.5
3,443,159	+				-0.5
3,443,160	-				-0.7
3,443,160	-				+0.5
3,443,160	-				-0.0
3,443,178	+				-0.0
3,443,179	-				-0.1
3,443,179	-				+1.1
3,443,180	+				+1.7
3,443,181	-				-0.5
3,443,181	-				-0.1
3,443,181	-				-1.7
3,443,181	-				-0.8
3,443,181	-				-1.4
3,443,181	-				+0.3
3,443,181	-				+1.0
3,443,185	-				-0.8
3,443,185	-				-2.0
3,443,193	-				-1.7
3,443,194	+				-1.0
3,443,194	+				+1.5
3,443,202	+				-0.8
3,443,202	+				-1.2
3,443,267	+				-2.1
3,443,268	-				-1.4
3,443,306	+				-0.7
3,443,372	-		DDA3937_RS15000	0.11	-1.2
3,443,377	+		DDA3937_RS15000	0.11	-0.5
3,443,378	-		DDA3937_RS15000	0.11	+0.2
3,443,378	-		DDA3937_RS15000	0.11	-0.5
3,443,378	-		DDA3937_RS15000	0.11	+1.2
3,443,378	-		DDA3937_RS15000	0.11	+0.5
3,443,378	-		DDA3937_RS15000	0.11	-0.7
3,443,378	-		DDA3937_RS15000	0.11	-1.0
3,443,379	+		DDA3937_RS15000	0.12	-0.9
3,443,379	+		DDA3937_RS15000	0.12	+0.7
3,443,379	+		DDA3937_RS15000	0.12	-0.5
3,443,380	-				-0.1
3,443,380	-		DDA3937_RS15000	0.12	+0.2
3,443,380	-		DDA3937_RS15000	0.12	-0.6
3,443,380	-		DDA3937_RS15000	0.12	+0.9
3,443,380	-		DDA3937_RS15000	0.12	-1.1
3,443,380	-		DDA3937_RS15000	0.12	-0.2
3,443,455	+		DDA3937_RS15000	0.21	+0.2
3,443,456	-		DDA3937_RS15000	0.21	-0.5
3,443,464	+		DDA3937_RS15000	0.22	-0.6
3,443,638	+		DDA3937_RS15000	0.45	-1.8
3,443,712	+		DDA3937_RS15000	0.54	-0.0
3,443,712	+		DDA3937_RS15000	0.54	-0.6
3,443,712	+		DDA3937_RS15000	0.54	-0.5
3,443,712	+		DDA3937_RS15000	0.54	+1.1
3,443,713	-		DDA3937_RS15000	0.54	+0.3
3,443,713	-		DDA3937_RS15000	0.54	-0.7
3,443,713	-		DDA3937_RS15000	0.54	+0.1
3,443,713	-		DDA3937_RS15000	0.54	-0.4
3,443,713	-		DDA3937_RS15000	0.54	-1.3
3,443,715	+		DDA3937_RS15000	0.54	+0.2
3,443,715	+		DDA3937_RS15000	0.54	-0.3
3,443,715	+		DDA3937_RS15000	0.54	-0.1
3,443,715	+		DDA3937_RS15000	0.54	-1.2
3,443,715	+		DDA3937_RS15000	0.54	+0.2
3,443,715	+		DDA3937_RS15000	0.54	-0.4
3,443,811	+		DDA3937_RS15000	0.67	+0.6
3,443,811	+		DDA3937_RS15000	0.67	+0.3
3,443,811	+		DDA3937_RS15000	0.67	+1.5
3,443,811	+		DDA3937_RS15000	0.67	-2.0
3,443,811	+		DDA3937_RS15000	0.67	-1.5
3,443,811	+		DDA3937_RS15000	0.67	+0.3
3,443,811	+		DDA3937_RS15000	0.67	-1.0
3,443,811	+		DDA3937_RS15000	0.67	-1.2
3,443,811	+		DDA3937_RS15000	0.67	+0.9
3,443,811	+		DDA3937_RS15000	0.67	-1.0
3,443,811	+		DDA3937_RS15000	0.67	+0.2
3,443,812	-		DDA3937_RS15000	0.67	+1.7
3,443,812	-		DDA3937_RS15000	0.67	-1.1
3,443,812	-		DDA3937_RS15000	0.67	-0.3
3,443,812	-		DDA3937_RS15000	0.67	-0.2
3,443,812	-		DDA3937_RS15000	0.67	+0.2
3,443,812	-		DDA3937_RS15000	0.67	+0.2
3,443,975	+		DDA3937_RS15000	0.87	+0.8
3,443,975	+		DDA3937_RS15000	0.87	-2.1
3,443,975	+		DDA3937_RS15000	0.87	+0.5
3,443,975	+		DDA3937_RS15000	0.87	-2.3
3,443,975	+		DDA3937_RS15000	0.87	-0.8
3,443,975	+		DDA3937_RS15000	0.87	+0.7
3,443,976	-		DDA3937_RS15000	0.88	+0.3
3,443,976	-		DDA3937_RS15000	0.88	-0.8
3,443,983	-		DDA3937_RS15000	0.88	-0.2
3,444,076	+				+0.1
3,444,076	+				-1.7
3,444,077	-				-1.1
3,444,077	-				+0.9
3,444,077	-				-0.6
3,444,077	-				+0.6
3,444,077	-				+0.0
3,444,092	-				+1.1
3,444,092	-				-1.2
3,444,177	+		DDA3937_RS15005	0.13	+3.8
3,444,178	-		DDA3937_RS15005	0.13	-0.5