Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS14260

Experiment: Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Norland
3,265,299	-		DDA3937_RS14255	0.66	-0.2
3,265,334	-		DDA3937_RS14255	0.69	+0.0
3,265,334	-		DDA3937_RS14255	0.69	+0.8
3,265,342	+		DDA3937_RS14255	0.70	+0.8
3,265,343	-		DDA3937_RS14255	0.70	-2.0
3,265,343	-		DDA3937_RS14255	0.70	+0.6
3,265,346	+		DDA3937_RS14255	0.70	+0.1
3,265,346	+		DDA3937_RS14255	0.70	-0.9
3,265,346	+		DDA3937_RS14255	0.70	-0.2
3,265,347	-		DDA3937_RS14255	0.70	+0.6
3,265,347	-		DDA3937_RS14255	0.70	-0.1
3,265,347	-		DDA3937_RS14255	0.70	-1.1
3,265,347	-		DDA3937_RS14255	0.70	-0.6
3,265,359	-		DDA3937_RS14255	0.71	+0.0
3,265,359	-		DDA3937_RS14255	0.71	-0.2
3,265,428	-		DDA3937_RS14255	0.77	-0.9
3,265,428	-		DDA3937_RS14255	0.77	-0.5
3,265,440	+		DDA3937_RS14255	0.78	-1.6
3,265,441	-		DDA3937_RS14255	0.78	-0.8
3,265,441	-		DDA3937_RS14255	0.78	-1.6
3,265,443	+		DDA3937_RS14255	0.79	+1.2
3,265,443	+		DDA3937_RS14255	0.79	-2.4
3,265,444	-		DDA3937_RS14255	0.79	-0.8
3,265,444	-		DDA3937_RS14255	0.79	-1.4
3,265,444	-		DDA3937_RS14255	0.79	-0.5
3,265,506	+		DDA3937_RS14255	0.84	-1.2
3,265,506	+		DDA3937_RS14255	0.84	+0.5
3,265,507	-		DDA3937_RS14255	0.84	-0.8
3,265,622	-				-1.4
3,265,622	-				-1.1
3,265,622	-				+1.4
3,265,630	-				-0.2
3,265,668	+				-1.2
3,265,668	+				-0.9
3,265,669	-				+0.9
3,265,691	+				+0.3
3,265,701	+				+0.0
3,265,724	+				-2.0
3,265,724	+				+1.4
3,265,725	-				-0.7
3,265,736	+				+0.3
3,265,775	-				+0.7
3,265,955	+				-0.8
3,266,071	-				-0.4
3,266,134	-				+2.9
3,266,170	-				+0.9
3,266,170	-				-3.0
3,266,261	-				+0.6
3,266,301	+				+1.4
3,266,356	+				+0.4
3,266,356	+				+0.8
3,266,357	-				+4.0
3,266,518	+		DDA3937_RS14260	0.15	-0.5
3,266,519	-		DDA3937_RS14260	0.15	+0.5
3,266,519	-		DDA3937_RS14260	0.15	+0.5
3,266,555	+		DDA3937_RS14260	0.18	-1.2
3,266,555	+		DDA3937_RS14260	0.18	-1.2
3,266,555	+		DDA3937_RS14260	0.18	-0.8
3,266,555	+		DDA3937_RS14260	0.18	-3.2
3,266,555	+		DDA3937_RS14260	0.18	-1.9
3,266,556	-		DDA3937_RS14260	0.18	-0.2
3,266,556	-		DDA3937_RS14260	0.18	-2.2
3,266,709	+		DDA3937_RS14260	0.27	+2.5
3,266,710	-		DDA3937_RS14260	0.27	-0.3
3,266,710	-		DDA3937_RS14260	0.27	-1.3
3,266,791	+		DDA3937_RS14260	0.32	-1.3
3,266,791	+		DDA3937_RS14260	0.32	-0.6
3,266,797	+				-0.2
3,266,797	+		DDA3937_RS14260	0.33	-1.0
3,266,797	+		DDA3937_RS14260	0.33	-0.3
3,266,798	-		DDA3937_RS14260	0.33	-2.0
3,267,150	+		DDA3937_RS14260	0.55	-0.4
3,267,151	-		DDA3937_RS14260	0.55	-1.2
3,267,159	+		DDA3937_RS14260	0.55	+1.8
3,267,172	-		DDA3937_RS14260	0.56	-0.8
3,267,175	+		DDA3937_RS14260	0.56	-0.4
3,267,175	+		DDA3937_RS14260	0.56	-1.4
3,267,175	+		DDA3937_RS14260	0.56	-1.3
3,267,175	+		DDA3937_RS14260	0.56	-0.4
3,267,176	-		DDA3937_RS14260	0.56	-0.4
3,267,176	-		DDA3937_RS14260	0.56	-2.4
3,267,220	+		DDA3937_RS14260	0.59	-0.8
3,267,220	+		DDA3937_RS14260	0.59	+1.4
3,267,221	-		DDA3937_RS14260	0.59	-1.2
3,267,221	-		DDA3937_RS14260	0.59	+0.7
3,267,224	+		DDA3937_RS14260	0.60	+0.2
3,267,301	+		DDA3937_RS14260	0.64	+0.3
3,267,301	+		DDA3937_RS14260	0.64	-0.9
3,267,301	+		DDA3937_RS14260	0.64	-0.6
3,267,301	+		DDA3937_RS14260	0.64	-1.0
3,267,301	+		DDA3937_RS14260	0.64	-0.2
3,267,302	-		DDA3937_RS14260	0.64	+0.0
3,267,302	-		DDA3937_RS14260	0.64	-2.2
3,267,302	-		DDA3937_RS14260	0.64	+0.8
3,267,302	-		DDA3937_RS14260	0.64	-0.2
3,267,302	-		DDA3937_RS14260	0.64	-1.0
3,267,302	-		DDA3937_RS14260	0.64	+0.8
3,267,377	+		DDA3937_RS14260	0.69	-0.4
3,267,377	+		DDA3937_RS14260	0.69	-2.2
3,267,377	+		DDA3937_RS14260	0.69	-0.8
3,267,377	+		DDA3937_RS14260	0.69	-2.0
3,267,377	+		DDA3937_RS14260	0.69	-1.1
3,267,377	+		DDA3937_RS14260	0.69	-1.2
3,267,443	+		DDA3937_RS14260	0.73	+1.9
3,267,484	-		DDA3937_RS14260	0.76	+2.1
3,267,484	-		DDA3937_RS14260	0.76	-0.3
3,267,484	-		DDA3937_RS14260	0.76	+0.4
3,267,501	+		DDA3937_RS14260	0.77	-1.4
3,267,502	-		DDA3937_RS14260	0.77	-0.6
3,267,561	+		DDA3937_RS14260	0.81	+2.0
3,267,561	+		DDA3937_RS14260	0.81	-0.6
3,267,562	-				-0.6
3,267,562	-		DDA3937_RS14260	0.81	-0.8
3,267,562	-		DDA3937_RS14260	0.81	-0.0
3,267,562	-		DDA3937_RS14260	0.81	-2.0
3,267,562	-		DDA3937_RS14260	0.81	-1.0
3,267,562	-		DDA3937_RS14260	0.81	-0.6
3,267,562	-		DDA3937_RS14260	0.81	+1.2
3,267,565	+		DDA3937_RS14260	0.81	-2.5
3,267,565	+		DDA3937_RS14260	0.81	-0.8
3,267,565	+		DDA3937_RS14260	0.81	+0.3
3,267,565	+		DDA3937_RS14260	0.81	-1.3
3,267,566	-		DDA3937_RS14260	0.81	-0.8
3,267,566	-		DDA3937_RS14260	0.81	-1.9
3,267,566	-		DDA3937_RS14260	0.81	-0.2
3,267,566	-		DDA3937_RS14260	0.81	+0.1
3,267,566	-		DDA3937_RS14260	0.81	-0.7
3,267,566	-		DDA3937_RS14260	0.81	+0.3
3,267,566	-		DDA3937_RS14260	0.81	-1.0
3,267,633	+		DDA3937_RS14260	0.85	+1.0
3,267,633	+		DDA3937_RS14260	0.85	-0.2
3,267,633	+		DDA3937_RS14260	0.85	-0.4
3,267,633	+		DDA3937_RS14260	0.85	-1.4
3,267,634	-		DDA3937_RS14260	0.85	+0.4
3,267,634	-		DDA3937_RS14260	0.85	+2.9
3,267,634	-		DDA3937_RS14260	0.85	+0.1
3,267,634	-		DDA3937_RS14260	0.85	-1.0
3,267,634	-		DDA3937_RS14260	0.85	-2.4
3,267,739	+				-0.3
3,267,739	+				+0.9
3,267,739	+				+0.5
3,267,740	-				-1.6
3,267,740	-				-0.7
3,267,740	-				-0.6
3,267,830	-				-2.3
3,267,847	+				-0.4
3,267,847	+				-0.6
3,267,848	-				-1.9
3,267,850	+				+0.0
3,267,851	-				+0.4
3,267,853	+				-1.6
3,267,876	-				-2.0
3,267,907	-				+0.5
3,267,907	-				-0.7
3,267,907	-				-0.2
3,267,962	-				-0.1
3,268,035	-				+0.2
3,268,040	+				-0.4
3,268,040	+				+1.0
3,268,040	+				-2.0
3,268,041	-				-1.2
3,268,041	-				-1.8
3,268,041	-				+1.5
3,268,041	-				+0.2
3,268,041	-				+0.8
3,268,041	-				+1.6
3,268,041	-				+0.8
3,268,044	+				+0.8
3,268,044	+				-1.2
3,268,044	+				-1.8
3,268,044	+				+1.9
3,268,044	+				-0.2
3,268,044	+				-0.0
3,268,044	+				-1.7
3,268,045	-				+1.4
3,268,045	-				-0.7
3,268,045	-				+0.2
3,268,045	-				-2.2
3,268,103	-				+0.5
3,268,277	-		DDA3937_RS14265	0.22	-1.5
3,268,473	+		DDA3937_RS14265	0.44	-0.1
3,268,484	+		DDA3937_RS14265	0.46	+0.4
3,268,484	+		DDA3937_RS14265	0.46	+0.1
3,268,484	+		DDA3937_RS14265	0.46	+0.4
3,268,484	+		DDA3937_RS14265	0.46	-1.8
3,268,484	+		DDA3937_RS14265	0.46	-0.6
3,268,485	-		DDA3937_RS14265	0.46	+1.2
3,268,485	-		DDA3937_RS14265	0.46	+0.7
3,268,535	+		DDA3937_RS14265	0.51	+0.1
3,268,536	-		DDA3937_RS14265	0.51	-0.8
3,268,668	+		DDA3937_RS14265	0.66	-1.9
3,268,710	-		DDA3937_RS14265	0.71	-0.3
3,268,783	+		DDA3937_RS14265	0.79	+0.4
3,268,804	+		DDA3937_RS14265	0.82	+0.8
3,268,831	+		DDA3937_RS14265	0.85	+4.4
3,268,831	+		DDA3937_RS14265	0.85	-0.8
3,268,831	+		DDA3937_RS14265	0.85	-2.2
3,268,831	+		DDA3937_RS14265	0.85	-0.1
3,268,848	+		DDA3937_RS14265	0.87	+2.0
3,268,868	+		DDA3937_RS14265	0.89	+1.8