Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS13970

Experiment: Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Norland
3,188,076	+				+0.2
3,188,088	-				-2.2
3,188,113	-				-0.6
3,188,132	+				-0.2
3,188,132	+				+0.5
3,188,132	+				-0.6
3,188,133	-				+0.8
3,188,133	-				-0.5
3,188,133	-				+1.3
3,188,133	-				+0.6
3,188,204	+				+0.6
3,188,219	+				-1.2
3,188,219	+				-1.0
3,188,219	+				-1.4
3,188,219	+				-2.7
3,188,220	-				-0.9
3,188,220	-				+0.4
3,188,227	+		DDA3937_RS23525	0.12	-1.3
3,188,228	-		DDA3937_RS23525	0.13	-0.2
3,188,278	+				+1.4
3,188,279	-		DDA3937_RS23525	0.30	-1.1
3,188,309	+		DDA3937_RS23525	0.40	+2.8
3,188,309	+		DDA3937_RS23525	0.40	-0.5
3,188,310	-		DDA3937_RS23525	0.40	+2.0
3,188,310	-		DDA3937_RS23525	0.40	-1.0
3,188,310	-		DDA3937_RS23525	0.40	+0.4
3,188,358	-		DDA3937_RS23525	0.57	+0.2
3,188,406	-		DDA3937_RS23525	0.73	+0.2
3,188,439	+		DDA3937_RS23525	0.84	-0.4
3,188,439	+		DDA3937_RS23525	0.84	-0.1
3,188,439	+				+0.1
3,188,439	+		DDA3937_RS23525	0.84	-0.8
3,188,440	-		DDA3937_RS23525	0.85	+1.2
3,188,440	-		DDA3937_RS23525	0.85	-1.6
3,188,459	+				+0.4
3,188,460	-				+0.4
3,188,538	+		DDA3937_RS23270	0.21	+0.8
3,188,539	-		DDA3937_RS23270	0.21	+1.4
3,188,578	+		DDA3937_RS23270	0.35	-0.3
3,188,587	+		DDA3937_RS23270	0.38	-0.5
3,188,587	+		DDA3937_RS23270	0.38	-1.4
3,188,587	+		DDA3937_RS23270	0.38	+2.1
3,188,587	+		DDA3937_RS23270	0.38	-0.4
3,188,587	+		DDA3937_RS23270	0.38	-1.0
3,188,587	+		DDA3937_RS23270	0.38	-2.5
3,188,587	+		DDA3937_RS23270	0.38	+0.6
3,188,587	+		DDA3937_RS23270	0.38	-1.8
3,188,587	+		DDA3937_RS23270	0.38	-1.3
3,188,587	+		DDA3937_RS23270	0.38	-0.2
3,188,587	+		DDA3937_RS23270	0.38	+0.2
3,188,587	+				-0.2
3,188,587	+		DDA3937_RS23270	0.38	-2.2
3,188,587	+		DDA3937_RS23270	0.38	+0.8
3,188,587	+		DDA3937_RS23270	0.38	-0.0
3,188,587	+		DDA3937_RS23270	0.38	-3.3
3,188,587	+		DDA3937_RS23270	0.38	-1.6
3,188,588	-		DDA3937_RS23270	0.39	+0.1
3,188,588	-		DDA3937_RS23270	0.39	+1.2
3,188,588	-		DDA3937_RS23270	0.39	+2.5
3,188,588	-		DDA3937_RS23270	0.39	-0.2
3,188,588	-		DDA3937_RS23270	0.39	-0.3
3,188,588	-		DDA3937_RS23270	0.39	+0.7
3,188,588	-		DDA3937_RS23270	0.39	-0.2
3,188,588	-		DDA3937_RS23270	0.39	-0.8
3,188,588	-		DDA3937_RS23270	0.39	+0.8
3,188,588	-		DDA3937_RS23270	0.39	+0.0
3,188,588	-		DDA3937_RS23270	0.39	+0.7
3,188,588	-		DDA3937_RS23270	0.39	+1.4
3,188,588	-		DDA3937_RS23270	0.39	+2.9
3,188,592	+		DDA3937_RS23270	0.40	+0.5
3,188,592	+		DDA3937_RS23270	0.40	-0.6
3,188,593	-		DDA3937_RS23270	0.41	-0.3
3,188,651	+		DDA3937_RS23270	0.62	-1.9
3,188,654	+		DDA3937_RS23270	0.63	+1.4
3,188,654	+		DDA3937_RS23270	0.63	-1.7
3,188,655	-		DDA3937_RS23270	0.63	-1.0
3,188,664	+		DDA3937_RS23270	0.67	-0.6
3,188,775	+				-2.4
3,188,775	+				-0.4
3,188,787	+		DDA3937_RS13965	0.11	-0.1
3,188,847	-		DDA3937_RS13965	0.30	+1.1
3,188,847	-		DDA3937_RS13965	0.30	-2.2
3,188,847	-		DDA3937_RS13965	0.30	-0.8
3,188,847	-		DDA3937_RS13965	0.30	-0.2
3,188,876	-		DDA3937_RS13965	0.40	-0.2
3,188,876	-		DDA3937_RS13965	0.40	-0.9
3,188,990	+		DDA3937_RS13965	0.76	+0.1
3,189,049	+				+0.4
3,189,049	+				-1.3
3,189,051	+				+0.3
3,189,123	-		DDA3937_RS13970	0.23	-0.9
3,189,123	-		DDA3937_RS13970	0.23	-1.9
3,189,223	+		DDA3937_RS13970	0.65	-1.2
3,189,223	+		DDA3937_RS13970	0.65	+1.2
3,189,248	+		DDA3937_RS13970	0.76	-0.6
3,189,248	+		DDA3937_RS13970	0.76	-0.7
3,189,248	+		DDA3937_RS13970	0.76	-1.4
3,189,261	-		DDA3937_RS13970	0.81	-0.8
3,189,326	-				+2.4
3,189,326	-				-0.9
3,189,346	-				-0.1
3,189,348	+				+0.0
3,189,349	-				+1.4
3,189,349	-				+0.7
3,189,354	+				+1.4
3,189,355	-				-1.3
3,189,355	-				+0.9
3,189,359	+				-0.5
3,189,444	+				+0.5
3,189,446	+				+1.3
3,189,534	-				-0.4
3,189,583	-				+1.3
3,189,608	+				+0.1
3,189,609	-				+0.4
3,189,628	-				-0.0
3,189,638	+				-1.4
3,189,639	-				-0.7
3,189,678	+				-1.8
3,189,680	+				-1.3
3,189,680	+				-0.2
3,189,722	+		DDA3937_RS13975	0.11	-2.4
3,189,722	+		DDA3937_RS13975	0.11	-2.2
3,189,723	-		DDA3937_RS13975	0.11	+1.0
3,189,723	-		DDA3937_RS13975	0.11	-0.6
3,189,723	-		DDA3937_RS13975	0.11	-0.9
3,189,723	-		DDA3937_RS13975	0.11	-0.7
3,189,723	-		DDA3937_RS13975	0.11	-0.3
3,189,723	-				+2.0
3,189,723	-		DDA3937_RS13975	0.11	-0.6
3,189,723	-		DDA3937_RS13975	0.11	+1.5
3,189,782	-		DDA3937_RS13975	0.17	-1.3
3,189,782	-		DDA3937_RS13975	0.17	+1.3
3,189,782	-		DDA3937_RS13975	0.17	-0.9
3,189,782	-		DDA3937_RS13975	0.17	-0.6
3,189,782	-		DDA3937_RS13975	0.17	-1.9
3,189,809	+				+1.4
3,189,809	+		DDA3937_RS13975	0.20	+0.0
3,189,809	+		DDA3937_RS13975	0.20	-2.1
3,189,810	-		DDA3937_RS13975	0.20	-1.6
3,189,846	+		DDA3937_RS13975	0.24	+2.8
3,189,846	+		DDA3937_RS13975	0.24	-1.6
3,189,846	+		DDA3937_RS13975	0.24	-0.6
3,189,899	+		DDA3937_RS13975	0.30	+0.2
3,189,906	+		DDA3937_RS13975	0.30	+0.4
3,189,988	+		DDA3937_RS13975	0.39	-1.2
3,189,988	+		DDA3937_RS13975	0.39	+1.1
3,189,989	-		DDA3937_RS13975	0.39	-0.9
3,190,060	-		DDA3937_RS13975	0.47	-1.6
3,190,148	-		DDA3937_RS13975	0.56	-0.6
3,190,177	-		DDA3937_RS13975	0.59	-0.2
3,190,177	-		DDA3937_RS13975	0.59	-0.6
3,190,177	-		DDA3937_RS13975	0.59	-1.4
3,190,179	-		DDA3937_RS13975	0.59	+0.7
3,190,185	+		DDA3937_RS13975	0.60	+1.9
3,190,185	+		DDA3937_RS13975	0.60	-0.2
3,190,186	-		DDA3937_RS13975	0.60	-1.6
3,190,186	-		DDA3937_RS13975	0.60	+3.2
3,190,186	-		DDA3937_RS13975	0.60	+1.4
3,190,225	+		DDA3937_RS13975	0.64	+1.3
3,190,225	+		DDA3937_RS13975	0.64	-1.3
3,190,226	-		DDA3937_RS13975	0.64	-0.4
3,190,244	+		DDA3937_RS13975	0.66	-0.7
3,190,244	+		DDA3937_RS13975	0.66	+1.0
3,190,245	-		DDA3937_RS13975	0.66	+0.2
3,190,245	-		DDA3937_RS13975	0.66	+0.8