Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS10925

Experiment: Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Norland
2,464,961	-		DDA3937_RS10920	0.63	-3.8
2,464,973	-		DDA3937_RS10920	0.64	-0.8
2,464,973	-				-0.6
2,464,974	+		DDA3937_RS10920	0.64	-0.4
2,464,975	-		DDA3937_RS10920	0.64	-0.7
2,464,996	-		DDA3937_RS10920	0.65	-2.0
2,464,996	-		DDA3937_RS10920	0.65	-0.4
2,465,035	+		DDA3937_RS10920	0.67	+1.2
2,465,091	+				+0.2
2,465,111	-		DDA3937_RS10920	0.71	-0.7
2,465,169	+		DDA3937_RS10920	0.74	+1.0
2,465,332	-		DDA3937_RS10920	0.82	+0.5
2,465,373	+		DDA3937_RS10920	0.84	+0.6
2,465,374	-		DDA3937_RS10920	0.84	+2.2
2,465,374	-		DDA3937_RS10920	0.84	-0.9
2,465,437	+		DDA3937_RS10920	0.88	+2.2
2,465,462	-		DDA3937_RS10920	0.89	-1.0
2,465,471	-		DDA3937_RS10920	0.89	-1.7
2,465,471	-		DDA3937_RS10920	0.89	+0.2
2,465,471	-		DDA3937_RS10920	0.89	-2.5
2,465,472	+		DDA3937_RS10920	0.89	+0.4
2,465,472	+				+2.8
2,465,473	-				-0.4
2,465,473	-		DDA3937_RS10920	0.89	+0.2
2,465,473	-		DDA3937_RS10920	0.89	-0.8
2,465,509	+				-2.5
2,465,509	+				-0.3
2,465,542	+				-0.2
2,465,542	+				-2.5
2,465,542	+				+0.3
2,465,546	-				-1.0
2,465,547	+				-0.8
2,465,547	+				+0.8
2,465,548	-				+3.1
2,465,548	-				-1.0
2,465,548	-				-1.2
2,465,549	+				-1.1
2,465,549	+				-0.5
2,465,550	-				-0.6
2,465,550	-				-1.3
2,465,550	-				-0.4
2,465,599	+				+1.4
2,465,631	+				-0.2
2,465,631	+				-0.5
2,465,631	+				+0.2
2,465,631	+				-0.1
2,465,631	+				-1.1
2,465,631	+				-1.0
2,465,632	-				-1.4
2,465,632	-				-0.4
2,465,632	-				+0.3
2,465,632	-				+7.7
2,465,632	-				-2.0
2,465,651	+				+0.2
2,465,652	-				-0.1
2,465,664	+				-0.8
2,465,664	+				-1.0
2,465,665	-				+2.4
2,465,665	-				+1.5
2,465,731	+				-0.6
2,465,751	+				-2.4
2,465,752	-				-0.7
2,465,894	-				-2.8
2,465,894	-				+0.1
2,465,919	+				-1.0
2,465,960	-				+0.4
2,466,085	+		DDA3937_RS10925	0.29	+1.2
2,466,241	+		DDA3937_RS10925	0.57	-1.0
2,466,241	+		DDA3937_RS10925	0.57	-0.0
2,466,241	+		DDA3937_RS10925	0.57	+1.7
2,466,242	-		DDA3937_RS10925	0.57	-0.4
2,466,242	-		DDA3937_RS10925	0.57	-1.1
2,466,242	-		DDA3937_RS10925	0.57	-0.0
2,466,243	+		DDA3937_RS10925	0.57	-1.4
2,466,243	+		DDA3937_RS10925	0.57	+1.2
2,466,243	+		DDA3937_RS10925	0.57	-0.2
2,466,243	+		DDA3937_RS10925	0.57	-1.2
2,466,244	-		DDA3937_RS10925	0.57	-0.3
2,466,244	-		DDA3937_RS10925	0.57	-1.1
2,466,262	+		DDA3937_RS10925	0.60	-0.9
2,466,268	+		DDA3937_RS10925	0.61	-0.8
2,466,268	+		DDA3937_RS10925	0.61	-0.1
2,466,285	+		DDA3937_RS10925	0.64	-1.6
2,466,286	-		DDA3937_RS10925	0.65	-1.3
2,466,286	-		DDA3937_RS10925	0.65	+0.9
2,466,385	+		DDA3937_RS10925	0.82	+0.2
2,466,386	-		DDA3937_RS10925	0.82	+0.2
2,466,386	-		DDA3937_RS10925	0.82	-1.3
2,466,386	-		DDA3937_RS10925	0.82	+0.4
2,466,386	-				+0.2
2,466,386	-		DDA3937_RS10925	0.82	+0.2
2,466,440	-				-1.0
2,466,470	+				+0.1
2,466,471	-				+0.6
2,466,472	+				+1.2
2,466,473	-				-0.7
2,466,481	+				+0.7
2,466,482	-				-0.0
2,466,482	-				-0.4
2,466,505	+				-0.7
2,466,505	+				-2.3
2,466,505	+				-0.6
2,466,506	-				-0.7
2,466,506	-				+0.9
2,466,506	-				+0.5
2,466,549	+				-1.7
2,466,549	+				+1.6
2,466,549	+				+1.0
2,466,549	+				+0.6
2,466,549	+				-0.7
2,466,549	+				+2.2
2,466,549	+				-0.6
2,466,550	-				-0.6
2,466,550	-				-1.4
2,466,550	-				-2.7
2,466,550	-				-0.4
2,466,550	-				-0.1
2,466,550	-				-1.5
2,466,550	-				+0.0
2,466,550	-				-2.1
2,466,550	-				-1.1
2,466,550	-				-0.4
2,466,550	-				-0.2
2,466,550	-				-0.9
2,466,550	-				-0.4
2,466,550	-				+0.2
2,466,551	+				-0.4
2,466,551	+				-0.8
2,466,552	-				+0.2
2,466,554	-				-0.0
2,466,581	-				-1.3
2,466,699	+				-0.1
2,466,699	+				+0.4
2,466,700	-				+0.5
2,466,700	-				+0.3
2,466,700	-				-0.6
2,466,738	+				-2.4
2,466,739	-				-2.3
2,466,740	+				-0.6
2,466,740	+				-1.3
2,466,740	+				+0.7
2,466,741	-				-1.8
2,466,741	-				+0.2
2,466,741	-				-2.4
2,466,741	-				+0.8
2,466,819	+				-0.8
2,466,831	+				+0.8
2,466,831	+				+0.5
2,466,832	-				+0.4
2,466,832	-				-1.4
2,466,832	-				-1.4
2,466,832	-				+0.9
2,466,834	-				+0.1
2,467,020	+		DDA3937_RS10930	0.14	+0.2
2,467,051	+		DDA3937_RS10930	0.20	+2.3
2,467,052	-		DDA3937_RS10930	0.21	+0.5
2,467,066	+		DDA3937_RS10930	0.23	-0.6
2,467,067	-		DDA3937_RS10930	0.23	+2.6
2,467,067	-		DDA3937_RS10930	0.23	+0.4
2,467,067	-		DDA3937_RS10930	0.23	-1.0
2,467,067	-		DDA3937_RS10930	0.23	-3.9
2,467,085	+		DDA3937_RS10930	0.27	+0.3
2,467,085	+		DDA3937_RS10930	0.27	+0.3
2,467,256	+		DDA3937_RS10930	0.59	+1.5
2,467,256	+		DDA3937_RS10930	0.59	-1.6
2,467,256	+		DDA3937_RS10930	0.59	+0.3
2,467,256	+		DDA3937_RS10930	0.59	+0.5
2,467,257	-		DDA3937_RS10930	0.60	-0.6
2,467,257	-		DDA3937_RS10930	0.60	+0.2
2,467,257	-		DDA3937_RS10930	0.60	-0.3
2,467,296	+		DDA3937_RS10930	0.67	-0.6
2,467,322	+		DDA3937_RS10930	0.72	+2.0
2,467,322	+		DDA3937_RS10930	0.72	-1.6
2,467,322	+		DDA3937_RS10930	0.72	+1.6
2,467,322	+		DDA3937_RS10930	0.72	+1.2
2,467,400	-		DDA3937_RS10930	0.87	+2.9
2,467,404	-		DDA3937_RS10930	0.88	+0.0
2,467,411	+		DDA3937_RS10930	0.89	-0.1
2,467,444	+				-0.8
2,467,467	-				+0.8