Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS08595

Experiment: Norland

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS08590 and DDA3937_RS08595 are separated by 34 nucleotidesDDA3937_RS08595 and DDA3937_RS08600 overlap by 4 nucleotides DDA3937_RS08590: DDA3937_RS08590 - iron ABC transporter substrate-binding protein, at 1,938,524 to 1,939,540 _RS08590 DDA3937_RS08595: DDA3937_RS08595 - iron ABC transporter permease, at 1,939,575 to 1,941,167 _RS08595 DDA3937_RS08600: DDA3937_RS08600 - ABC transporter ATP-binding protein, at 1,941,164 to 1,942,198 _RS08600 Position (kb) 1939 1940 1941 1942Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1938.629 kb on + strand, within DDA3937_RS08590at 1938.677 kb on - strand, within DDA3937_RS08590at 1938.774 kb on + strand, within DDA3937_RS08590at 1938.774 kb on + strand, within DDA3937_RS08590at 1938.774 kb on + strand, within DDA3937_RS08590at 1938.775 kb on - strand, within DDA3937_RS08590at 1938.775 kb on - strand, within DDA3937_RS08590at 1938.775 kb on - strand, within DDA3937_RS08590at 1938.775 kb on - strand, within DDA3937_RS08590at 1938.930 kb on - strand, within DDA3937_RS08590at 1939.124 kb on + strand, within DDA3937_RS08590at 1939.125 kb on - strand, within DDA3937_RS08590at 1939.125 kb on - strand, within DDA3937_RS08590at 1939.126 kb on + strand, within DDA3937_RS08590at 1939.183 kb on + strand, within DDA3937_RS08590at 1939.184 kb on - strand, within DDA3937_RS08590at 1939.184 kb on - strand, within DDA3937_RS08590at 1939.187 kb on + strandat 1939.188 kb on - strand, within DDA3937_RS08590at 1939.188 kb on - strand, within DDA3937_RS08590at 1939.193 kb on + strand, within DDA3937_RS08590at 1939.193 kb on + strand, within DDA3937_RS08590at 1939.193 kb on + strand, within DDA3937_RS08590at 1939.193 kb on + strand, within DDA3937_RS08590at 1939.194 kb on - strand, within DDA3937_RS08590at 1939.194 kb on - strand, within DDA3937_RS08590at 1939.196 kb on + strand, within DDA3937_RS08590at 1939.196 kb on + strand, within DDA3937_RS08590at 1939.217 kb on - strand, within DDA3937_RS08590at 1939.250 kb on + strand, within DDA3937_RS08590at 1939.250 kb on + strand, within DDA3937_RS08590at 1939.251 kb on - strand, within DDA3937_RS08590at 1939.251 kb on - strand, within DDA3937_RS08590at 1939.251 kb on - strand, within DDA3937_RS08590at 1939.251 kb on - strand, within DDA3937_RS08590at 1939.253 kb on + strand, within DDA3937_RS08590at 1939.253 kb on + strand, within DDA3937_RS08590at 1939.253 kb on + strand, within DDA3937_RS08590at 1939.254 kb on - strand, within DDA3937_RS08590at 1939.324 kb on + strand, within DDA3937_RS08590at 1939.324 kb on + strand, within DDA3937_RS08590at 1939.324 kb on + strand, within DDA3937_RS08590at 1939.325 kb on - strand, within DDA3937_RS08590at 1939.325 kb on - strand, within DDA3937_RS08590at 1939.325 kb on - strand, within DDA3937_RS08590at 1939.538 kb on + strandat 1939.539 kb on - strandat 1939.562 kb on + strandat 1939.562 kb on + strandat 1939.563 kb on - strandat 1939.567 kb on + strandat 1939.567 kb on + strandat 1939.567 kb on + strandat 1939.567 kb on + strandat 1939.568 kb on - strandat 1939.752 kb on - strand, within DDA3937_RS08595at 1939.799 kb on + strand, within DDA3937_RS08595at 1939.800 kb on - strand, within DDA3937_RS08595at 1939.800 kb on - strand, within DDA3937_RS08595at 1939.800 kb on - strand, within DDA3937_RS08595at 1939.802 kb on + strand, within DDA3937_RS08595at 1939.802 kb on + strand, within DDA3937_RS08595at 1939.807 kb on + strand, within DDA3937_RS08595at 1939.808 kb on - strand, within DDA3937_RS08595at 1940.023 kb on - strand, within DDA3937_RS08595at 1940.023 kb on - strand, within DDA3937_RS08595at 1940.033 kb on + strand, within DDA3937_RS08595at 1940.037 kb on + strand, within DDA3937_RS08595at 1940.037 kb on + strand, within DDA3937_RS08595at 1940.037 kb on + strand, within DDA3937_RS08595at 1940.038 kb on - strand, within DDA3937_RS08595at 1940.038 kb on - strand, within DDA3937_RS08595at 1940.214 kb on + strand, within DDA3937_RS08595at 1940.234 kb on + strand, within DDA3937_RS08595at 1940.270 kb on + strand, within DDA3937_RS08595at 1940.271 kb on - strand, within DDA3937_RS08595at 1940.271 kb on - strand, within DDA3937_RS08595at 1940.271 kb on - strand, within DDA3937_RS08595at 1940.271 kb on - strand, within DDA3937_RS08595at 1940.685 kb on + strand, within DDA3937_RS08595at 1940.685 kb on + strand, within DDA3937_RS08595at 1940.685 kb on + strand, within DDA3937_RS08595at 1940.685 kb on + strand, within DDA3937_RS08595at 1940.685 kb on + strand, within DDA3937_RS08595at 1940.685 kb on + strand, within DDA3937_RS08595at 1940.685 kb on + strand, within DDA3937_RS08595at 1940.685 kb on + strand, within DDA3937_RS08595at 1940.685 kb on + strand, within DDA3937_RS08595at 1940.685 kb on + strand, within DDA3937_RS08595at 1940.685 kb on + strand, within DDA3937_RS08595at 1940.685 kb on + strand, within DDA3937_RS08595at 1940.685 kb on + strand, within DDA3937_RS08595at 1940.686 kb on - strand, within DDA3937_RS08595at 1940.686 kb on - strand, within DDA3937_RS08595at 1940.686 kb on - strand, within DDA3937_RS08595at 1940.686 kb on - strand, within DDA3937_RS08595at 1940.686 kb on - strand, within DDA3937_RS08595at 1940.686 kb on - strand, within DDA3937_RS08595at 1940.688 kb on - strand, within DDA3937_RS08595at 1940.764 kb on - strand, within DDA3937_RS08595at 1940.793 kb on + strand, within DDA3937_RS08595at 1940.793 kb on + strand, within DDA3937_RS08595at 1940.793 kb on + strand, within DDA3937_RS08595at 1940.794 kb on - strand, within DDA3937_RS08595at 1940.794 kb on - strand, within DDA3937_RS08595at 1940.794 kb on - strand, within DDA3937_RS08595at 1940.794 kb on - strand, within DDA3937_RS08595at 1940.797 kb on + strand, within DDA3937_RS08595at 1940.797 kb on + strand, within DDA3937_RS08595at 1940.797 kb on + strand, within DDA3937_RS08595at 1940.797 kb on + strand, within DDA3937_RS08595at 1940.798 kb on - strand, within DDA3937_RS08595at 1940.798 kb on - strand, within DDA3937_RS08595at 1940.798 kb on - strand, within DDA3937_RS08595at 1940.798 kb on - strand, within DDA3937_RS08595at 1940.798 kb on - strand, within DDA3937_RS08595at 1940.798 kb on - strand, within DDA3937_RS08595at 1940.798 kb on - strand, within DDA3937_RS08595at 1940.807 kb on + strand, within DDA3937_RS08595at 1940.807 kb on + strandat 1940.825 kb on + strand, within DDA3937_RS08595at 1940.826 kb on - strand, within DDA3937_RS08595at 1941.069 kb on + strandat 1941.070 kb on - strandat 1941.070 kb on - strandat 1941.070 kb on - strandat 1941.071 kb on + strandat 1941.072 kb on - strandat 1941.072 kb on - strandat 1941.098 kb on + strandat 1941.169 kb on + strandat 1941.169 kb on + strandat 1941.414 kb on + strand, within DDA3937_RS08600at 1941.833 kb on + strand, within DDA3937_RS08600at 1941.833 kb on + strand, within DDA3937_RS08600at 1941.834 kb on - strand, within DDA3937_RS08600at 1941.834 kb on - strand, within DDA3937_RS08600at 1941.834 kb on - strand, within DDA3937_RS08600at 1941.973 kb on + strand, within DDA3937_RS08600at 1941.973 kb on + strand, within DDA3937_RS08600at 1941.974 kb on - strand, within DDA3937_RS08600at 1941.974 kb on - strand, within DDA3937_RS08600at 1941.976 kb on + strand, within DDA3937_RS08600at 1941.976 kb on + strand, within DDA3937_RS08600at 1941.976 kb on + strand, within DDA3937_RS08600at 1941.976 kb on + strand, within DDA3937_RS08600at 1941.977 kb on - strand, within DDA3937_RS08600at 1941.977 kb on - strand, within DDA3937_RS08600at 1941.977 kb on - strandat 1941.977 kb on - strand, within DDA3937_RS08600at 1941.977 kb on - strand, within DDA3937_RS08600at 1941.977 kb on - strand, within DDA3937_RS08600at 1942.117 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Norland
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1,938,629 + DDA3937_RS08590 0.10 -0.8
1,938,677 - DDA3937_RS08590 0.15 -0.4
1,938,774 + DDA3937_RS08590 0.25 -0.8
1,938,774 + DDA3937_RS08590 0.25 -0.6
1,938,774 + DDA3937_RS08590 0.25 -2.9
1,938,775 - DDA3937_RS08590 0.25 -1.4
1,938,775 - DDA3937_RS08590 0.25 -1.8
1,938,775 - DDA3937_RS08590 0.25 +0.5
1,938,775 - DDA3937_RS08590 0.25 -0.2
1,938,930 - DDA3937_RS08590 0.40 -0.9
1,939,124 + DDA3937_RS08590 0.59 -1.3
1,939,125 - DDA3937_RS08590 0.59 -1.6
1,939,125 - DDA3937_RS08590 0.59 -0.1
1,939,126 + DDA3937_RS08590 0.59 -0.3
1,939,183 + DDA3937_RS08590 0.65 +0.0
1,939,184 - DDA3937_RS08590 0.65 +0.4
1,939,184 - DDA3937_RS08590 0.65 +0.7
1,939,187 + +0.2
1,939,188 - DDA3937_RS08590 0.65 +0.9
1,939,188 - DDA3937_RS08590 0.65 -0.3
1,939,193 + DDA3937_RS08590 0.66 +0.0
1,939,193 + DDA3937_RS08590 0.66 +3.6
1,939,193 + DDA3937_RS08590 0.66 -0.1
1,939,193 + DDA3937_RS08590 0.66 -0.9
1,939,194 - DDA3937_RS08590 0.66 +1.4
1,939,194 - DDA3937_RS08590 0.66 -1.6
1,939,196 + DDA3937_RS08590 0.66 -0.4
1,939,196 + DDA3937_RS08590 0.66 -2.5
1,939,217 - DDA3937_RS08590 0.68 -1.4
1,939,250 + DDA3937_RS08590 0.71 -0.1
1,939,250 + DDA3937_RS08590 0.71 -0.2
1,939,251 - DDA3937_RS08590 0.71 +0.6
1,939,251 - DDA3937_RS08590 0.71 -0.4
1,939,251 - DDA3937_RS08590 0.71 +0.9
1,939,251 - DDA3937_RS08590 0.71 +2.0
1,939,253 + DDA3937_RS08590 0.72 -1.1
1,939,253 + DDA3937_RS08590 0.72 -1.8
1,939,253 + DDA3937_RS08590 0.72 +0.1
1,939,254 - DDA3937_RS08590 0.72 +1.7
1,939,324 + DDA3937_RS08590 0.79 -0.4
1,939,324 + DDA3937_RS08590 0.79 +0.6
1,939,324 + DDA3937_RS08590 0.79 +0.9
1,939,325 - DDA3937_RS08590 0.79 -1.1
1,939,325 - DDA3937_RS08590 0.79 +0.4
1,939,325 - DDA3937_RS08590 0.79 +1.8
1,939,538 + -0.1
1,939,539 - -1.1
1,939,562 + +0.5
1,939,562 + -0.2
1,939,563 - +0.3
1,939,567 + +0.4
1,939,567 + -0.8
1,939,567 + -0.1
1,939,567 + -0.3
1,939,568 - -0.4
1,939,752 - DDA3937_RS08595 0.11 -0.8
1,939,799 + DDA3937_RS08595 0.14 -0.9
1,939,800 - DDA3937_RS08595 0.14 -0.3
1,939,800 - DDA3937_RS08595 0.14 -0.8
1,939,800 - DDA3937_RS08595 0.14 -0.8
1,939,802 + DDA3937_RS08595 0.14 +0.0
1,939,802 + DDA3937_RS08595 0.14 -1.0
1,939,807 + DDA3937_RS08595 0.15 +0.4
1,939,808 - DDA3937_RS08595 0.15 -1.9
1,940,023 - DDA3937_RS08595 0.28 -0.3
1,940,023 - DDA3937_RS08595 0.28 -1.0
1,940,033 + DDA3937_RS08595 0.29 +1.5
1,940,037 + DDA3937_RS08595 0.29 +0.5
1,940,037 + DDA3937_RS08595 0.29 +0.5
1,940,037 + DDA3937_RS08595 0.29 +1.4
1,940,038 - DDA3937_RS08595 0.29 -0.9
1,940,038 - DDA3937_RS08595 0.29 +0.4
1,940,214 + DDA3937_RS08595 0.40 -1.4
1,940,234 + DDA3937_RS08595 0.41 -0.9
1,940,270 + DDA3937_RS08595 0.44 +1.9
1,940,271 - DDA3937_RS08595 0.44 +0.8
1,940,271 - DDA3937_RS08595 0.44 +0.2
1,940,271 - DDA3937_RS08595 0.44 -1.1
1,940,271 - DDA3937_RS08595 0.44 -0.9
1,940,685 + DDA3937_RS08595 0.70 +0.3
1,940,685 + DDA3937_RS08595 0.70 -2.2
1,940,685 + DDA3937_RS08595 0.70 +0.6
1,940,685 + DDA3937_RS08595 0.70 -0.2
1,940,685 + DDA3937_RS08595 0.70 -0.8
1,940,685 + DDA3937_RS08595 0.70 +0.2
1,940,685 + DDA3937_RS08595 0.70 -0.5
1,940,685 + DDA3937_RS08595 0.70 -1.6
1,940,685 + DDA3937_RS08595 0.70 -0.6
1,940,685 + DDA3937_RS08595 0.70 -0.9
1,940,685 + DDA3937_RS08595 0.70 +0.4
1,940,685 + DDA3937_RS08595 0.70 +0.9
1,940,685 + DDA3937_RS08595 0.70 -0.6
1,940,686 - DDA3937_RS08595 0.70 -2.1
1,940,686 - DDA3937_RS08595 0.70 +0.1
1,940,686 - DDA3937_RS08595 0.70 -0.8
1,940,686 - DDA3937_RS08595 0.70 -1.6
1,940,686 - DDA3937_RS08595 0.70 -1.4
1,940,686 - DDA3937_RS08595 0.70 +0.9
1,940,688 - DDA3937_RS08595 0.70 +0.2
1,940,764 - DDA3937_RS08595 0.75 +3.2
1,940,793 + DDA3937_RS08595 0.76 -1.6
1,940,793 + DDA3937_RS08595 0.76 -0.6
1,940,793 + DDA3937_RS08595 0.76 +0.2
1,940,794 - DDA3937_RS08595 0.77 -1.4
1,940,794 - DDA3937_RS08595 0.77 -2.1
1,940,794 - DDA3937_RS08595 0.77 -0.4
1,940,794 - DDA3937_RS08595 0.77 +0.3
1,940,797 + DDA3937_RS08595 0.77 -0.9
1,940,797 + DDA3937_RS08595 0.77 +0.6
1,940,797 + DDA3937_RS08595 0.77 +0.2
1,940,797 + DDA3937_RS08595 0.77 +0.4
1,940,798 - DDA3937_RS08595 0.77 -1.0
1,940,798 - DDA3937_RS08595 0.77 -0.2
1,940,798 - DDA3937_RS08595 0.77 -2.0
1,940,798 - DDA3937_RS08595 0.77 -1.2
1,940,798 - DDA3937_RS08595 0.77 -1.9
1,940,798 - DDA3937_RS08595 0.77 -0.9
1,940,798 - DDA3937_RS08595 0.77 +0.1
1,940,807 + DDA3937_RS08595 0.77 -1.4
1,940,807 + -0.8
1,940,825 + DDA3937_RS08595 0.78 -0.2
1,940,826 - DDA3937_RS08595 0.79 -1.7
1,941,069 + +0.8
1,941,070 - +3.2
1,941,070 - -0.8
1,941,070 - -1.1
1,941,071 + -1.8
1,941,072 - -0.6
1,941,072 - -2.2
1,941,098 + +0.8
1,941,169 + -0.2
1,941,169 + -0.1
1,941,414 + DDA3937_RS08600 0.24 -0.4
1,941,833 + DDA3937_RS08600 0.65 +0.5
1,941,833 + DDA3937_RS08600 0.65 -0.4
1,941,834 - DDA3937_RS08600 0.65 -1.4
1,941,834 - DDA3937_RS08600 0.65 -0.1
1,941,834 - DDA3937_RS08600 0.65 -1.9
1,941,973 + DDA3937_RS08600 0.78 +0.1
1,941,973 + DDA3937_RS08600 0.78 +0.6
1,941,974 - DDA3937_RS08600 0.78 -0.9
1,941,974 - DDA3937_RS08600 0.78 -1.1
1,941,976 + DDA3937_RS08600 0.78 +1.2
1,941,976 + DDA3937_RS08600 0.78 -0.1
1,941,976 + DDA3937_RS08600 0.78 +0.1
1,941,976 + DDA3937_RS08600 0.78 -0.3
1,941,977 - DDA3937_RS08600 0.79 -2.1
1,941,977 - DDA3937_RS08600 0.79 +0.3
1,941,977 - -1.4
1,941,977 - DDA3937_RS08600 0.79 -0.8
1,941,977 - DDA3937_RS08600 0.79 +2.1
1,941,977 - DDA3937_RS08600 0.79 -0.4
1,942,117 - -0.9

Or see this region's nucleotide sequence