Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS08315

Experiment: Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Norland
1,877,739	+		DDA3937_RS08305	0.70	-1.7
1,877,739	+		DDA3937_RS08305	0.70	+0.7
1,877,739	+		DDA3937_RS08305	0.70	-1.1
1,877,739	+		DDA3937_RS08305	0.70	+1.2
1,877,740	-		DDA3937_RS08305	0.70	+0.2
1,877,768	+		DDA3937_RS08305	0.75	-1.1
1,877,800	+		DDA3937_RS08305	0.81	-0.8
1,877,800	+				-0.8
1,877,801	-		DDA3937_RS08305	0.81	-1.2
1,877,806	+		DDA3937_RS08305	0.82	-1.1
1,877,806	+		DDA3937_RS08305	0.82	-1.4
1,877,806	+		DDA3937_RS08305	0.82	-0.1
1,877,828	+		DDA3937_RS08305	0.86	-1.4
1,877,828	+		DDA3937_RS08305	0.86	-0.3
1,877,828	+		DDA3937_RS08305	0.86	-0.7
1,877,828	+		DDA3937_RS08305	0.86	-0.6
1,877,828	+		DDA3937_RS08305	0.86	+0.2
1,877,828	+		DDA3937_RS08305	0.86	+0.5
1,877,828	+		DDA3937_RS08305	0.86	-0.4
1,877,850	+		DDA3937_RS08305	0.89	-2.1
1,877,890	+				-2.9
1,877,891	-				+1.4
1,877,930	+				-0.3
1,877,931	-				-0.0
1,877,931	-				-1.1
1,877,947	+				-0.1
1,877,948	-				-0.4
1,877,948	-				-3.1
1,877,955	+				-0.4
1,878,037	+		DDA3937_RS08310	0.13	-1.1
1,878,078	-		DDA3937_RS08310	0.22	-0.8
1,878,078	-		DDA3937_RS08310	0.22	-1.8
1,878,093	+		DDA3937_RS08310	0.25	+0.0
1,878,116	+		DDA3937_RS08310	0.30	-1.1
1,878,117	-		DDA3937_RS08310	0.30	-1.1
1,878,137	+		DDA3937_RS08310	0.34	-1.1
1,878,201	-		DDA3937_RS08310	0.48	-0.0
1,878,253	-		DDA3937_RS08310	0.59	+1.2
1,878,350	+		DDA3937_RS08310	0.79	+0.5
1,878,350	+		DDA3937_RS08310	0.79	-1.1
1,878,351	-		DDA3937_RS08310	0.79	-1.3
1,878,448	-				-0.9
1,878,460	+				-2.3
1,878,503	-				-0.2
1,878,551	+				-1.2
1,878,551	+				+1.7
1,878,551	+				-0.8
1,878,552	-				-2.9
1,878,575	+				-1.8
1,878,602	+				-1.2
1,878,653	+				-0.6
1,878,654	-				+0.7
1,878,656	+				-0.4
1,878,657	-				-0.1
1,878,663	-				+0.6
1,878,665	+				-1.8
1,878,666	-				+0.5
1,878,671	+				-1.1
1,878,672	-				-0.1
1,878,672	-				-1.6
1,878,788	+		DDA3937_RS08315	0.13	+0.4
1,878,789	-		DDA3937_RS08315	0.13	-1.4
1,878,926	+		DDA3937_RS08315	0.27	+1.2
1,878,926	+				-1.1
1,878,926	+		DDA3937_RS08315	0.27	+2.5
1,879,062	+		DDA3937_RS08315	0.40	+1.8
1,879,062	+		DDA3937_RS08315	0.40	-0.9
1,879,062	+		DDA3937_RS08315	0.40	+1.4
1,879,062	+		DDA3937_RS08315	0.40	-1.9
1,879,063	-		DDA3937_RS08315	0.40	+0.5
1,879,063	-		DDA3937_RS08315	0.40	-0.4
1,879,064	+		DDA3937_RS08315	0.40	-1.9
1,879,064	+		DDA3937_RS08315	0.40	-0.2
1,879,064	+		DDA3937_RS08315	0.40	+0.2
1,879,064	+		DDA3937_RS08315	0.40	-0.0
1,879,064	+		DDA3937_RS08315	0.40	-1.4
1,879,064	+		DDA3937_RS08315	0.40	+0.6
1,879,064	+				+0.2
1,879,064	+		DDA3937_RS08315	0.40	-2.4
1,879,065	-		DDA3937_RS08315	0.40	-0.2
1,879,065	-		DDA3937_RS08315	0.40	-0.8
1,879,065	-		DDA3937_RS08315	0.40	-0.4
1,879,065	-		DDA3937_RS08315	0.40	-0.8
1,879,065	-		DDA3937_RS08315	0.40	-0.9
1,879,065	-		DDA3937_RS08315	0.40	-0.4
1,879,065	-		DDA3937_RS08315	0.40	-1.7
1,879,065	-		DDA3937_RS08315	0.40	-1.1
1,879,065	-		DDA3937_RS08315	0.40	-1.7
1,879,110	+				-0.1
1,879,110	+		DDA3937_RS08315	0.45	-1.4
1,879,110	+		DDA3937_RS08315	0.45	+1.1
1,879,110	+		DDA3937_RS08315	0.45	+0.4
1,879,111	-		DDA3937_RS08315	0.45	+1.5
1,879,111	-		DDA3937_RS08315	0.45	-1.4
1,879,180	+		DDA3937_RS08315	0.52	-1.8
1,879,180	+		DDA3937_RS08315	0.52	-1.9
1,879,239	-		DDA3937_RS08315	0.58	-0.1
1,879,308	+		DDA3937_RS08315	0.65	-0.5
1,879,308	+		DDA3937_RS08315	0.65	-1.2
1,879,308	+		DDA3937_RS08315	0.65	-0.1
1,879,308	+		DDA3937_RS08315	0.65	+1.1
1,879,309	-		DDA3937_RS08315	0.65	+0.6
1,879,309	-		DDA3937_RS08315	0.65	-0.5
1,879,309	-		DDA3937_RS08315	0.65	-0.6
1,879,309	-		DDA3937_RS08315	0.65	-0.5
1,879,310	+		DDA3937_RS08315	0.65	+1.1
1,879,310	+		DDA3937_RS08315	0.65	+0.1
1,879,310	+		DDA3937_RS08315	0.65	-1.6
1,879,330	-		DDA3937_RS08315	0.67	+0.4
1,879,346	+		DDA3937_RS08315	0.68	-0.8
1,879,346	+		DDA3937_RS08315	0.68	-1.8
1,879,346	+		DDA3937_RS08315	0.68	+0.5
1,879,347	-		DDA3937_RS08315	0.68	+1.5
1,879,347	-		DDA3937_RS08315	0.68	-0.9
1,879,347	-		DDA3937_RS08315	0.68	+0.7
1,879,371	+		DDA3937_RS08315	0.71	-1.9
1,879,371	+		DDA3937_RS08315	0.71	+0.3
1,879,371	+		DDA3937_RS08315	0.71	-0.1
1,879,371	+		DDA3937_RS08315	0.71	+2.2
1,879,371	+		DDA3937_RS08315	0.71	-1.1
1,879,371	+		DDA3937_RS08315	0.71	+1.6
1,879,371	+		DDA3937_RS08315	0.71	-1.1
1,879,372	-		DDA3937_RS08315	0.71	+0.5
1,879,372	-		DDA3937_RS08315	0.71	+2.6
1,879,372	-		DDA3937_RS08315	0.71	-1.2
1,879,372	-		DDA3937_RS08315	0.71	+0.8
1,879,372	-		DDA3937_RS08315	0.71	+1.6
1,879,372	-		DDA3937_RS08315	0.71	+0.6
1,879,372	-		DDA3937_RS08315	0.71	-0.9
1,879,372	-		DDA3937_RS08315	0.71	+0.2
1,879,372	-		DDA3937_RS08315	0.71	-1.2
1,879,372	-		DDA3937_RS08315	0.71	-0.6
1,879,372	-		DDA3937_RS08315	0.71	+1.2
1,879,372	-		DDA3937_RS08315	0.71	+1.5
1,879,379	+		DDA3937_RS08315	0.72	+0.1
1,879,380	-		DDA3937_RS08315	0.72	-1.9
1,879,394	+		DDA3937_RS08315	0.73	+0.2
1,879,394	+		DDA3937_RS08315	0.73	+0.6
1,879,395	-		DDA3937_RS08315	0.73	-0.1
1,879,395	-		DDA3937_RS08315	0.73	-1.8
1,879,395	-		DDA3937_RS08315	0.73	-1.4
1,879,397	+				+2.0
1,879,397	+		DDA3937_RS08315	0.73	-0.9
1,879,397	+		DDA3937_RS08315	0.73	+0.1
1,879,398	-		DDA3937_RS08315	0.74	+0.5
1,879,398	-		DDA3937_RS08315	0.74	-0.4
1,879,484	-		DDA3937_RS08315	0.82	+0.2
1,879,484	-		DDA3937_RS08315	0.82	-0.3
1,879,484	-		DDA3937_RS08315	0.82	-1.6
1,879,554	+		DDA3937_RS08315	0.89	+0.6
1,879,564	+				-2.5
1,879,564	+				-0.4
1,879,565	-				-1.7
1,879,565	-				-0.8
1,879,638	+				-0.4
1,879,638	+				-0.3
1,879,662	+				-1.2
1,879,662	+				+1.3
1,879,662	+				-0.5
1,879,754	+				+0.9
1,879,755	-				-0.5
1,879,761	+				+0.1
1,879,762	-				-1.2
1,879,765	+				-1.1
1,879,766	-				+0.9
1,879,766	-				+0.2
1,879,766	-				-0.7
1,879,766	-				-1.4
1,879,766	-				-1.4
1,879,769	+				+0.3
1,879,769	+				-0.2
1,879,769	+				+1.7
1,879,769	+				-0.6
1,879,769	+				-0.2
1,879,769	+				+0.1
1,879,769	+				-0.5
1,879,770	-				-1.7
1,879,770	-				-0.4
1,879,799	+				-0.5
1,879,799	+				+0.3
1,879,800	-				-2.4
1,879,800	-				-0.8
1,879,800	-				-0.1
1,879,827	+				-1.1
1,879,827	+				+0.5
1,879,828	-				+0.1
1,879,828	-				+0.1
1,879,828	-				+0.6
1,879,850	+				-0.5
1,879,850	+				-1.4
1,879,886	-				+3.3
1,879,886	-				-0.5
1,879,886	-				+0.8
1,879,886	-				-0.2
1,879,886	-				+1.8
1,879,886	-				+0.3
1,879,887	+				+0.2
1,879,887	+				+2.2
1,879,887	+				-1.6
1,879,887	+				-0.3
1,879,888	-				-0.9
1,879,888	-				+1.2
1,879,888	-				+0.3
1,879,888	-				-0.4
1,879,888	-				-0.5
1,879,888	-				-0.4
1,879,888	-				-0.3
1,879,934	-				-0.7
1,879,934	-				+0.2
1,879,997	+		DDA3937_RS08320	0.16	+0.1
1,880,014	+				+0.2
1,880,014	+		DDA3937_RS08320	0.18	-0.6
1,880,015	-		DDA3937_RS08320	0.18	+0.9
1,880,015	-		DDA3937_RS08320	0.18	-0.1
1,880,015	-		DDA3937_RS08320	0.18	-0.1
1,880,015	-		DDA3937_RS08320	0.18	-1.6
1,880,061	+		DDA3937_RS08320	0.25	-0.2
1,880,061	+		DDA3937_RS08320	0.25	-1.4
1,880,062	-		DDA3937_RS08320	0.25	+0.7
1,880,062	-		DDA3937_RS08320	0.25	-0.4
1,880,062	-		DDA3937_RS08320	0.25	+0.8
1,880,070	+		DDA3937_RS08320	0.26	+0.5
1,880,103	-		DDA3937_RS08320	0.30	-0.3
1,880,103	-		DDA3937_RS08320	0.30	-1.4
1,880,110	+		DDA3937_RS08320	0.31	+1.2
1,880,110	+		DDA3937_RS08320	0.31	-0.2
1,880,110	+		DDA3937_RS08320	0.31	+0.9
1,880,110	+		DDA3937_RS08320	0.31	-0.7
1,880,110	+		DDA3937_RS08320	0.31	-1.4
1,880,110	+		DDA3937_RS08320	0.31	+0.0
1,880,110	+		DDA3937_RS08320	0.31	-1.8
1,880,111	-		DDA3937_RS08320	0.32	-0.8
1,880,160	+		DDA3937_RS08320	0.38	-0.3
1,880,160	+		DDA3937_RS08320	0.38	+1.0
1,880,161	-		DDA3937_RS08320	0.38	+3.7
1,880,161	-		DDA3937_RS08320	0.38	-2.1
1,880,161	-		DDA3937_RS08320	0.38	+1.0
1,880,202	+				-1.1
1,880,202	+		DDA3937_RS08320	0.44	+0.7
1,880,202	+		DDA3937_RS08320	0.44	+0.2
1,880,203	-		DDA3937_RS08320	0.44	-0.8
1,880,203	-		DDA3937_RS08320	0.44	+1.6
1,880,203	-		DDA3937_RS08320	0.44	-0.8
1,880,250	+		DDA3937_RS08320	0.51	-0.1
1,880,251	-		DDA3937_RS08320	0.51	-2.1
1,880,365	+		DDA3937_RS08320	0.67	-0.5
1,880,366	-		DDA3937_RS08320	0.67	-1.8
1,880,366	-		DDA3937_RS08320	0.67	-1.3
1,880,366	-				-1.4
1,880,379	+		DDA3937_RS08320	0.68	+0.6
1,880,379	+		DDA3937_RS08320	0.68	-0.6
1,880,379	+		DDA3937_RS08320	0.68	+1.4
1,880,380	-		DDA3937_RS08320	0.69	+2.8
1,880,380	-		DDA3937_RS08320	0.69	-0.7
1,880,458	+				-0.8
1,880,459	-		DDA3937_RS08320	0.79	+0.8
1,880,525	-		DDA3937_RS08320	0.89	-1.1
1,880,525	-		DDA3937_RS08320	0.89	+0.1
1,880,592	+				+0.2
1,880,593	-				+1.1
1,880,593	-				-1.0
1,880,599	+				+3.0
1,880,600	-				+0.3
1,880,607	+				+1.6
1,880,607	+				-2.0
1,880,608	-				+0.2
1,880,608	-				+2.3
1,880,613	+				+0.2
1,880,613	+				-1.3
1,880,613	+				+0.3
1,880,613	+				-2.2
1,880,613	+				-0.9
1,880,613	+				-1.1
1,880,613	+				+0.5
1,880,613	+				-0.5
1,880,613	+				-0.9
1,880,613	+				-1.8
1,880,613	+				-0.8
1,880,613	+				-0.4
1,880,613	+				-0.8
1,880,613	+				-0.9
1,880,613	+				-0.9
1,880,613	+				-0.9
1,880,613	+				-0.1
1,880,614	-				-0.2
1,880,614	-				+0.6
1,880,614	-				+1.0
1,880,614	-				+0.4
1,880,614	-				+0.7
1,880,614	-				+0.2
1,880,614	-				-2.6
1,880,614	-				-0.5
1,880,614	-				-0.5
1,880,614	-				-1.4
1,880,614	-				-0.4
1,880,614	-				+0.6
1,880,614	-				+0.2
1,880,615	+				-1.1
1,880,615	+				+0.2
1,880,615	+				-0.9
1,880,616	-				-0.4
1,880,616	-				-1.4
1,880,633	+				-2.4
1,880,633	+				-1.1
1,880,634	-				-0.8
1,880,634	-				+2.7
1,880,637	+				-1.8
1,880,637	+				+0.4
1,880,638	-				+0.1
1,880,638	-				-0.7
1,880,640	+				-0.8
1,880,640	+				-1.1
1,880,640	+				-0.5
1,880,641	-				-0.2
1,880,641	-				+0.3
1,880,641	-				-0.6
1,880,641	-				+0.6