Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS06760

Experiment: Norland

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS06755 and DDA3937_RS06760 are separated by 158 nucleotidesDDA3937_RS06760 and DDA3937_RS06765 are separated by 423 nucleotides DDA3937_RS06755: DDA3937_RS06755 - glycosyltransferase family 2 protein, at 1,510,117 to 1,511,010 _RS06755 DDA3937_RS06760: DDA3937_RS06760 - EpsG family protein, at 1,511,169 to 1,512,095 _RS06760 DDA3937_RS06765: DDA3937_RS06765 - DUF616 domain-containing protein, at 1,512,519 to 1,513,304 _RS06765 Position (kb) 1511 1512 1513Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1510.563 kb on + strand, within DDA3937_RS06755at 1510.564 kb on - strand, within DDA3937_RS06755at 1510.655 kb on + strand, within DDA3937_RS06755at 1510.660 kb on + strand, within DDA3937_RS06755at 1510.660 kb on + strand, within DDA3937_RS06755at 1510.796 kb on - strandat 1511.099 kb on + strandat 1511.214 kb on - strandat 1511.368 kb on + strand, within DDA3937_RS06760at 1511.374 kb on + strand, within DDA3937_RS06760at 1511.384 kb on + strand, within DDA3937_RS06760at 1511.386 kb on + strand, within DDA3937_RS06760at 1511.386 kb on + strand, within DDA3937_RS06760at 1511.485 kb on - strand, within DDA3937_RS06760at 1511.536 kb on - strand, within DDA3937_RS06760at 1511.729 kb on - strand, within DDA3937_RS06760at 1511.754 kb on + strand, within DDA3937_RS06760at 1511.827 kb on + strand, within DDA3937_RS06760at 1511.829 kb on + strand, within DDA3937_RS06760at 1511.829 kb on + strand, within DDA3937_RS06760at 1511.975 kb on - strand, within DDA3937_RS06760at 1512.148 kb on + strandat 1512.169 kb on + strandat 1512.216 kb on + strandat 1512.243 kb on - strandat 1512.551 kb on + strandat 1512.551 kb on + strandat 1512.771 kb on + strand, within DDA3937_RS06765at 1512.771 kb on + strand, within DDA3937_RS06765at 1512.772 kb on - strand, within DDA3937_RS06765at 1512.877 kb on + strand, within DDA3937_RS06765at 1512.941 kb on + strand, within DDA3937_RS06765at 1512.941 kb on + strand, within DDA3937_RS06765at 1512.943 kb on + strand, within DDA3937_RS06765

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Per-strain Table

Position Strand Gene LocusTag Fraction Norland
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1,510,563 + DDA3937_RS06755 0.50 -2.4
1,510,564 - DDA3937_RS06755 0.50 -2.2
1,510,655 + DDA3937_RS06755 0.60 -1.4
1,510,660 + DDA3937_RS06755 0.61 +0.3
1,510,660 + DDA3937_RS06755 0.61 -1.2
1,510,796 - +1.4
1,511,099 + -0.4
1,511,214 - +0.4
1,511,368 + DDA3937_RS06760 0.21 -1.6
1,511,374 + DDA3937_RS06760 0.22 -0.7
1,511,384 + DDA3937_RS06760 0.23 -0.6
1,511,386 + DDA3937_RS06760 0.23 -3.6
1,511,386 + DDA3937_RS06760 0.23 +0.8
1,511,485 - DDA3937_RS06760 0.34 -0.9
1,511,536 - DDA3937_RS06760 0.40 -0.9
1,511,729 - DDA3937_RS06760 0.60 -1.2
1,511,754 + DDA3937_RS06760 0.63 -1.7
1,511,827 + DDA3937_RS06760 0.71 -0.4
1,511,829 + DDA3937_RS06760 0.71 +1.1
1,511,829 + DDA3937_RS06760 0.71 +0.7
1,511,975 - DDA3937_RS06760 0.87 +0.1
1,512,148 + +0.4
1,512,169 + +1.3
1,512,216 + -0.9
1,512,243 - +3.6
1,512,551 + -1.6
1,512,551 + -1.6
1,512,771 + DDA3937_RS06765 0.32 -1.9
1,512,771 + DDA3937_RS06765 0.32 -2.0
1,512,772 - DDA3937_RS06765 0.32 -0.9
1,512,877 + DDA3937_RS06765 0.46 -1.9
1,512,941 + DDA3937_RS06765 0.54 -1.0
1,512,941 + DDA3937_RS06765 0.54 -0.9
1,512,943 + DDA3937_RS06765 0.54 -1.1

Or see this region's nucleotide sequence