Experiment: Norland
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS04470 and DDA3937_RS04475 are separated by 309 nucleotides DDA3937_RS04475 and DDA3937_RS04480 are separated by 41 nucleotides DDA3937_RS04480 and DDA3937_RS04485 are separated by 47 nucleotides DDA3937_RS04485 and DDA3937_RS04490 are separated by 406 nucleotides
DDA3937_RS04470: DDA3937_RS04470 - helix-turn-helix transcriptional regulator, at 987,889 to 988,443
_RS04470
DDA3937_RS04475: DDA3937_RS04475 - PTS glucose transporter subunit IIA, at 988,753 to 989,262
_RS04475
DDA3937_RS04480: DDA3937_RS04480 - phosphoenolpyruvate-protein phosphotransferase PtsI, at 989,304 to 991,031
_RS04480
DDA3937_RS04485: DDA3937_RS04485 - phosphocarrier protein Hpr, at 991,079 to 991,336
_RS04485
DDA3937_RS04490: DDA3937_RS04490 - cysteine synthase A, at 991,743 to 992,711
_RS04490
Position (kb) 989
990
991
992 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 988.312 kb on - strand, within DDA3937_RS04470 at 988.368 kb on + strand, within DDA3937_RS04470 at 988.369 kb on - strand, within DDA3937_RS04470 at 988.371 kb on + strand, within DDA3937_RS04470 at 988.371 kb on + strand, within DDA3937_RS04470 at 988.382 kb on - strand, within DDA3937_RS04470 at 988.431 kb on + strand at 988.437 kb on + strand at 988.437 kb on + strand at 988.437 kb on + strand at 988.438 kb on - strand at 988.438 kb on - strand at 988.459 kb on + strand at 988.481 kb on + strand at 988.481 kb on + strand at 988.482 kb on - strand at 988.482 kb on - strand at 988.500 kb on + strand at 988.501 kb on - strand at 988.501 kb on - strand at 988.501 kb on - strand at 988.501 kb on - strand at 988.515 kb on + strand at 988.515 kb on + strand at 988.531 kb on + strand at 988.532 kb on - strand at 988.561 kb on + strand at 988.562 kb on - strand at 988.562 kb on - strand at 988.586 kb on + strand at 988.586 kb on + strand at 988.586 kb on + strand at 988.586 kb on + strand at 988.587 kb on - strand at 988.587 kb on - strand at 988.621 kb on + strand at 988.622 kb on - strand at 988.622 kb on - strand at 988.622 kb on - strand at 988.622 kb on - strand at 988.639 kb on + strand at 988.639 kb on + strand at 988.640 kb on - strand at 988.643 kb on + strand at 988.643 kb on + strand at 988.643 kb on + strand at 988.643 kb on + strand at 988.643 kb on + strand at 988.643 kb on + strand at 988.643 kb on + strand at 988.643 kb on + strand at 988.643 kb on + strand at 988.644 kb on - strand at 988.644 kb on - strand at 988.644 kb on - strand at 988.644 kb on - strand at 988.644 kb on - strand at 988.644 kb on - strand at 988.645 kb on + strand at 988.646 kb on - strand at 988.646 kb on - strand at 988.646 kb on - strand at 988.646 kb on - strand at 988.685 kb on + strand at 988.685 kb on + strand at 988.685 kb on + strand at 988.704 kb on - strand at 988.719 kb on + strand at 988.720 kb on - strand at 988.721 kb on + strand at 988.721 kb on + strand at 988.721 kb on + strand at 988.722 kb on - strand at 988.722 kb on - strand at 988.738 kb on + strand at 988.739 kb on - strand at 988.739 kb on - strand at 988.739 kb on - strand at 988.754 kb on + strand at 989.041 kb on - strand, within DDA3937_RS04475 at 989.274 kb on - strand at 989.284 kb on - strand at 989.284 kb on - strand at 989.338 kb on - strand at 989.350 kb on - strand at 989.350 kb on - strand at 989.408 kb on - strand at 989.498 kb on + strand, within DDA3937_RS04480 at 989.498 kb on + strand, within DDA3937_RS04480 at 989.499 kb on - strand, within DDA3937_RS04480 at 989.612 kb on - strand, within DDA3937_RS04480 at 989.657 kb on - strand, within DDA3937_RS04480 at 989.657 kb on - strand, within DDA3937_RS04480 at 989.664 kb on + strand, within DDA3937_RS04480 at 989.904 kb on - strand, within DDA3937_RS04480 at 989.949 kb on - strand, within DDA3937_RS04480 at 990.002 kb on - strand, within DDA3937_RS04480 at 990.002 kb on - strand, within DDA3937_RS04480 at 990.082 kb on + strand, within DDA3937_RS04480 at 990.280 kb on + strand, within DDA3937_RS04480 at 990.296 kb on - strand, within DDA3937_RS04480 at 990.464 kb on + strand, within DDA3937_RS04480 at 990.465 kb on - strand, within DDA3937_RS04480 at 990.495 kb on - strand, within DDA3937_RS04480 at 990.803 kb on + strand, within DDA3937_RS04480 at 990.804 kb on - strand, within DDA3937_RS04480 at 991.015 kb on - strand at 991.015 kb on - strand at 991.032 kb on - strand at 991.038 kb on - strand at 991.038 kb on - strand at 991.038 kb on - strand at 991.038 kb on - strand at 991.043 kb on - strand at 991.062 kb on + strand at 991.231 kb on + strand, within DDA3937_RS04485 at 991.232 kb on - strand, within DDA3937_RS04485 at 991.232 kb on - strand, within DDA3937_RS04485 at 991.319 kb on + strand at 991.319 kb on + strand at 991.320 kb on - strand at 991.320 kb on - strand at 991.361 kb on + strand at 991.380 kb on + strand at 991.380 kb on + strand at 991.381 kb on - strand at 991.387 kb on + strand at 991.388 kb on - strand at 991.392 kb on + strand at 991.392 kb on + strand at 991.392 kb on + strand at 991.392 kb on + strand at 991.392 kb on + strand at 991.392 kb on + strand at 991.392 kb on + strand at 991.392 kb on + strand at 991.392 kb on + strand at 991.392 kb on + strand at 991.392 kb on + strand at 991.392 kb on + strand at 991.392 kb on + strand at 991.392 kb on + strand at 991.392 kb on + strand at 991.392 kb on + strand at 991.392 kb on + strand at 991.392 kb on + strand at 991.393 kb on - strand at 991.393 kb on - strand at 991.393 kb on - strand at 991.393 kb on - strand at 991.393 kb on - strand at 991.393 kb on - strand at 991.393 kb on - strand at 991.393 kb on - strand at 991.396 kb on + strand at 991.396 kb on + strand at 991.396 kb on + strand at 991.396 kb on + strand at 991.396 kb on + strand at 991.396 kb on + strand at 991.396 kb on + strand at 991.397 kb on - strand at 991.397 kb on - strand at 991.401 kb on - strand at 991.406 kb on + strand at 991.407 kb on - strand at 991.561 kb on + strand at 991.567 kb on + strand at 991.567 kb on + strand at 991.567 kb on + strand at 991.567 kb on + strand at 991.568 kb on - strand at 991.568 kb on - strand at 991.590 kb on + strand at 991.621 kb on - strand at 991.627 kb on + strand at 991.653 kb on + strand at 991.654 kb on - strand at 991.654 kb on - strand at 991.654 kb on - strand at 991.654 kb on - strand at 991.658 kb on - strand at 991.717 kb on - strand at 991.744 kb on + strand at 991.745 kb on - strand at 991.745 kb on - strand at 991.745 kb on - strand at 991.790 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Norland remove 988,312 - DDA3937_RS04470 0.76 -1.0 988,368 + DDA3937_RS04470 0.86 -0.1 988,369 - DDA3937_RS04470 0.86 +0.3 988,371 + DDA3937_RS04470 0.87 -1.4 988,371 + DDA3937_RS04470 0.87 +2.4 988,382 - DDA3937_RS04470 0.89 +0.3 988,431 + -2.4 988,437 + -0.1 988,437 + -0.4 988,437 + -1.0 988,438 - +0.9 988,438 - +0.0 988,459 + +0.6 988,481 + +0.6 988,481 + -0.6 988,482 - -0.3 988,482 - -1.1 988,500 + +0.0 988,501 - -2.3 988,501 - +0.4 988,501 - +1.6 988,501 - -0.4 988,515 + +0.1 988,515 + +0.2 988,531 + +0.2 988,532 - -1.4 988,561 + -1.5 988,562 - -0.2 988,562 - +1.9 988,586 + -0.8 988,586 + -1.5 988,586 + -0.7 988,586 + +0.3 988,587 - +0.5 988,587 - -1.5 988,621 + +0.9 988,622 - -0.7 988,622 - -0.6 988,622 - +0.0 988,622 - -2.1 988,639 + -0.6 988,639 + +1.6 988,640 - -0.1 988,643 + +0.0 988,643 + -0.4 988,643 + -0.5 988,643 + -1.2 988,643 + +1.2 988,643 + +0.8 988,643 + +0.4 988,643 + +0.0 988,643 + +0.2 988,644 - +0.4 988,644 - -1.0 988,644 - +0.5 988,644 - -0.1 988,644 - -0.1 988,644 - +0.2 988,645 + -1.0 988,646 - -1.6 988,646 - -0.6 988,646 - +0.3 988,646 - +1.0 988,685 + +0.5 988,685 + -0.4 988,685 + -0.7 988,704 - -1.6 988,719 + -0.5 988,720 - -1.3 988,721 + +1.6 988,721 + -0.5 988,721 + -0.7 988,722 - +0.0 988,722 - -0.7 988,738 + +0.4 988,739 - -1.2 988,739 - +0.6 988,739 - -1.0 988,754 + -1.7 989,041 - DDA3937_RS04475 0.56 -1.2 989,274 - +1.3 989,284 - -0.6 989,284 - -0.6 989,338 - -2.9 989,350 - -1.2 989,350 - -2.2 989,408 - -2.4 989,498 + DDA3937_RS04480 0.11 -2.1 989,498 + DDA3937_RS04480 0.11 +0.6 989,499 - DDA3937_RS04480 0.11 -1.7 989,612 - DDA3937_RS04480 0.18 -1.1 989,657 - DDA3937_RS04480 0.20 -0.0 989,657 - DDA3937_RS04480 0.20 -1.1 989,664 + DDA3937_RS04480 0.21 -2.8 989,904 - DDA3937_RS04480 0.35 -1.7 989,949 - DDA3937_RS04480 0.37 -1.0 990,002 - DDA3937_RS04480 0.40 -0.2 990,002 - DDA3937_RS04480 0.40 -0.7 990,082 + DDA3937_RS04480 0.45 -1.2 990,280 + DDA3937_RS04480 0.56 +0.0 990,296 - DDA3937_RS04480 0.57 +0.0 990,464 + DDA3937_RS04480 0.67 -1.7 990,465 - DDA3937_RS04480 0.67 -1.7 990,495 - DDA3937_RS04480 0.69 -1.7 990,803 + DDA3937_RS04480 0.87 +0.8 990,804 - DDA3937_RS04480 0.87 -2.4 991,015 - -1.4 991,015 - -1.1 991,032 - -1.0 991,038 - -0.8 991,038 - -1.2 991,038 - -1.7 991,038 - -0.2 991,043 - +0.7 991,062 + -0.1 991,231 + DDA3937_RS04485 0.59 -0.1 991,232 - DDA3937_RS04485 0.59 +0.3 991,232 - DDA3937_RS04485 0.59 -1.2 991,319 + -1.1 991,319 + -0.1 991,320 - -0.7 991,320 - -1.0 991,361 + -1.0 991,380 + -2.2 991,380 + -1.2 991,381 - -0.4 991,387 + -0.4 991,388 - -0.4 991,392 + +0.6 991,392 + -0.6 991,392 + -0.2 991,392 + -0.7 991,392 + -0.1 991,392 + -1.0 991,392 + -1.0 991,392 + +0.6 991,392 + +0.4 991,392 + -1.2 991,392 + -1.2 991,392 + -1.1 991,392 + -0.2 991,392 + +0.9 991,392 + -0.6 991,392 + -1.0 991,392 + -0.1 991,392 + +0.6 991,393 - -1.0 991,393 - -0.7 991,393 - -1.7 991,393 - +0.0 991,393 - -0.4 991,393 - -2.0 991,393 - -1.7 991,393 - -2.0 991,396 + +1.0 991,396 + -0.0 991,396 + -1.5 991,396 + -1.8 991,396 + -0.8 991,396 + -0.4 991,396 + -0.1 991,397 - -0.4 991,397 - +0.4 991,401 - +1.3 991,406 + -0.8 991,407 - -1.2 991,561 + -0.5 991,567 + -1.4 991,567 + -0.2 991,567 + -0.7 991,567 + -0.4 991,568 - +0.2 991,568 - -0.4 991,590 + +1.6 991,621 - -1.7 991,627 + -1.6 991,653 + -0.7 991,654 - +1.0 991,654 - -2.2 991,654 - +0.0 991,654 - -0.4 991,658 - +1.0 991,717 - +1.1 991,744 + -1.7 991,745 - -1.2 991,745 - -1.0 991,745 - -1.5 991,790 + -1.1
Or see this region's nucleotide sequence