Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS04290

Experiment: Norland

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS04280 and DDA3937_RS04285 overlap by 4 nucleotidesDDA3937_RS04285 and DDA3937_RS04290 overlap by 29 nucleotidesDDA3937_RS04290 and DDA3937_RS04295 are separated by 3 nucleotides DDA3937_RS04280: DDA3937_RS04280 - tail fiber assembly protein, at 942,569 to 943,189 _RS04280 DDA3937_RS04285: DDA3937_RS04285 - hypothetical protein, at 943,186 to 943,911 _RS04285 DDA3937_RS04290: DDA3937_RS04290 - hypothetical protein, at 943,883 to 944,410 _RS04290 DDA3937_RS04295: DDA3937_RS04295 - hypothetical protein, at 944,414 to 946,066 _RS04295 Position (kb) 943 944 945Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 942.985 kb on + strand, within DDA3937_RS04280at 942.985 kb on + strand, within DDA3937_RS04280at 943.047 kb on + strand, within DDA3937_RS04280at 943.047 kb on + strand, within DDA3937_RS04280at 943.047 kb on + strand, within DDA3937_RS04280at 943.048 kb on - strand, within DDA3937_RS04280at 943.048 kb on - strand, within DDA3937_RS04280at 943.048 kb on - strand, within DDA3937_RS04280at 943.048 kb on - strand, within DDA3937_RS04280at 943.048 kb on - strand, within DDA3937_RS04280at 943.048 kb on - strand, within DDA3937_RS04280at 943.090 kb on - strand, within DDA3937_RS04280at 943.122 kb on + strand, within DDA3937_RS04280at 943.138 kb on - strandat 943.138 kb on - strandat 943.138 kb on - strandat 943.143 kb on + strandat 943.143 kb on + strandat 943.143 kb on + strandat 943.143 kb on + strandat 943.144 kb on - strandat 943.144 kb on - strandat 943.206 kb on + strandat 943.206 kb on + strandat 943.207 kb on - strandat 943.270 kb on + strand, within DDA3937_RS04285at 943.270 kb on + strand, within DDA3937_RS04285at 943.271 kb on - strand, within DDA3937_RS04285at 943.303 kb on + strand, within DDA3937_RS04285at 943.303 kb on + strand, within DDA3937_RS04285at 943.303 kb on + strand, within DDA3937_RS04285at 943.304 kb on - strand, within DDA3937_RS04285at 943.304 kb on - strand, within DDA3937_RS04285at 943.308 kb on - strand, within DDA3937_RS04285at 943.330 kb on + strand, within DDA3937_RS04285at 943.330 kb on + strand, within DDA3937_RS04285at 943.330 kb on + strand, within DDA3937_RS04285at 943.331 kb on - strand, within DDA3937_RS04285at 943.346 kb on + strand, within DDA3937_RS04285at 943.347 kb on - strand, within DDA3937_RS04285at 943.347 kb on - strand, within DDA3937_RS04285at 943.415 kb on + strand, within DDA3937_RS04285at 943.599 kb on + strand, within DDA3937_RS04285at 943.600 kb on - strand, within DDA3937_RS04285at 943.803 kb on + strand, within DDA3937_RS04285at 943.825 kb on + strand, within DDA3937_RS04285at 943.825 kb on + strand, within DDA3937_RS04285at 943.826 kb on - strand, within DDA3937_RS04285at 943.826 kb on - strand, within DDA3937_RS04285at 943.828 kb on - strand, within DDA3937_RS04285at 943.828 kb on - strand, within DDA3937_RS04285at 943.845 kb on + strandat 943.893 kb on + strandat 943.893 kb on + strandat 943.894 kb on - strandat 943.894 kb on - strandat 943.898 kb on - strandat 943.898 kb on - strandat 943.922 kb on - strandat 944.116 kb on + strand, within DDA3937_RS04290at 944.116 kb on + strand, within DDA3937_RS04290at 944.116 kb on + strand, within DDA3937_RS04290at 944.117 kb on - strand, within DDA3937_RS04290at 944.239 kb on + strand, within DDA3937_RS04290at 944.240 kb on - strand, within DDA3937_RS04290at 944.240 kb on - strand, within DDA3937_RS04290at 944.254 kb on + strand, within DDA3937_RS04290at 944.254 kb on + strand, within DDA3937_RS04290at 944.255 kb on - strand, within DDA3937_RS04290at 944.255 kb on - strand, within DDA3937_RS04290at 944.454 kb on + strandat 944.454 kb on + strandat 944.455 kb on - strandat 944.455 kb on - strandat 944.455 kb on - strandat 944.455 kb on - strandat 944.455 kb on - strandat 944.455 kb on - strandat 944.455 kb on - strandat 944.463 kb on + strandat 944.463 kb on + strandat 944.464 kb on - strandat 944.464 kb on - strandat 944.474 kb on - strandat 944.479 kb on - strandat 944.509 kb on + strandat 944.534 kb on + strandat 944.534 kb on + strandat 944.534 kb on + strandat 944.534 kb on + strandat 944.535 kb on - strandat 944.535 kb on - strandat 944.535 kb on - strandat 944.535 kb on - strandat 944.567 kb on + strandat 944.568 kb on - strandat 944.570 kb on - strandat 944.788 kb on + strand, within DDA3937_RS04295at 944.789 kb on - strand, within DDA3937_RS04295at 944.801 kb on - strand, within DDA3937_RS04295at 944.801 kb on - strand, within DDA3937_RS04295at 944.806 kb on + strand, within DDA3937_RS04295at 944.807 kb on - strand, within DDA3937_RS04295at 944.807 kb on - strand, within DDA3937_RS04295at 944.807 kb on - strand, within DDA3937_RS04295at 944.864 kb on + strand, within DDA3937_RS04295at 944.864 kb on + strand, within DDA3937_RS04295at 944.864 kb on + strand, within DDA3937_RS04295at 944.864 kb on + strand, within DDA3937_RS04295at 944.864 kb on + strand, within DDA3937_RS04295at 944.864 kb on + strand, within DDA3937_RS04295at 944.865 kb on - strand, within DDA3937_RS04295at 944.865 kb on - strand, within DDA3937_RS04295at 944.865 kb on - strand, within DDA3937_RS04295at 944.865 kb on - strand, within DDA3937_RS04295at 944.897 kb on + strand, within DDA3937_RS04295at 944.905 kb on + strand, within DDA3937_RS04295at 944.905 kb on + strand, within DDA3937_RS04295at 944.906 kb on - strand, within DDA3937_RS04295at 944.906 kb on - strand, within DDA3937_RS04295at 944.983 kb on + strand, within DDA3937_RS04295at 944.983 kb on + strand, within DDA3937_RS04295at 944.983 kb on + strand, within DDA3937_RS04295at 944.984 kb on - strand, within DDA3937_RS04295at 944.984 kb on - strand, within DDA3937_RS04295at 944.984 kb on - strand, within DDA3937_RS04295at 944.984 kb on - strand, within DDA3937_RS04295at 945.003 kb on + strand, within DDA3937_RS04295at 945.003 kb on + strand, within DDA3937_RS04295at 945.003 kb on + strand, within DDA3937_RS04295at 945.003 kb on + strand, within DDA3937_RS04295at 945.054 kb on + strand, within DDA3937_RS04295at 945.055 kb on - strand, within DDA3937_RS04295at 945.055 kb on - strand, within DDA3937_RS04295at 945.091 kb on - strand, within DDA3937_RS04295at 945.236 kb on - strand, within DDA3937_RS04295at 945.276 kb on + strand, within DDA3937_RS04295at 945.276 kb on + strand, within DDA3937_RS04295at 945.276 kb on + strand, within DDA3937_RS04295at 945.277 kb on - strand, within DDA3937_RS04295at 945.277 kb on - strand, within DDA3937_RS04295at 945.277 kb on - strand, within DDA3937_RS04295at 945.283 kb on - strand, within DDA3937_RS04295at 945.321 kb on + strand, within DDA3937_RS04295at 945.322 kb on - strand, within DDA3937_RS04295at 945.322 kb on - strand, within DDA3937_RS04295at 945.322 kb on - strand, within DDA3937_RS04295at 945.322 kb on - strand, within DDA3937_RS04295at 945.322 kb on - strand, within DDA3937_RS04295at 945.323 kb on + strand, within DDA3937_RS04295

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Per-strain Table

Position Strand Gene LocusTag Fraction Norland
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942,985 + DDA3937_RS04280 0.67 -0.4
942,985 + DDA3937_RS04280 0.67 -0.5
943,047 + DDA3937_RS04280 0.77 -0.2
943,047 + DDA3937_RS04280 0.77 +1.6
943,047 + DDA3937_RS04280 0.77 -1.0
943,048 - DDA3937_RS04280 0.77 +1.5
943,048 - DDA3937_RS04280 0.77 -1.2
943,048 - DDA3937_RS04280 0.77 -1.0
943,048 - DDA3937_RS04280 0.77 -1.7
943,048 - DDA3937_RS04280 0.77 -0.6
943,048 - DDA3937_RS04280 0.77 +0.1
943,090 - DDA3937_RS04280 0.84 +0.7
943,122 + DDA3937_RS04280 0.89 +1.6
943,138 - -1.0
943,138 - +0.2
943,138 - -1.3
943,143 + -0.2
943,143 + -0.2
943,143 + -1.1
943,143 + -1.5
943,144 - +0.0
943,144 - -1.2
943,206 + -0.1
943,206 + +2.9
943,207 - -1.3
943,270 + DDA3937_RS04285 0.12 -1.7
943,270 + DDA3937_RS04285 0.12 -1.4
943,271 - DDA3937_RS04285 0.12 +0.1
943,303 + DDA3937_RS04285 0.16 -0.2
943,303 + DDA3937_RS04285 0.16 +0.2
943,303 + DDA3937_RS04285 0.16 -0.7
943,304 - DDA3937_RS04285 0.16 +0.3
943,304 - DDA3937_RS04285 0.16 -0.4
943,308 - DDA3937_RS04285 0.17 -0.3
943,330 + DDA3937_RS04285 0.20 -0.6
943,330 + DDA3937_RS04285 0.20 -0.0
943,330 + DDA3937_RS04285 0.20 -1.1
943,331 - DDA3937_RS04285 0.20 -0.5
943,346 + DDA3937_RS04285 0.22 +1.2
943,347 - DDA3937_RS04285 0.22 +1.3
943,347 - DDA3937_RS04285 0.22 -1.6
943,415 + DDA3937_RS04285 0.32 +1.0
943,599 + DDA3937_RS04285 0.57 -1.0
943,600 - DDA3937_RS04285 0.57 -2.1
943,803 + DDA3937_RS04285 0.85 +0.7
943,825 + DDA3937_RS04285 0.88 +0.0
943,825 + DDA3937_RS04285 0.88 -1.2
943,826 - DDA3937_RS04285 0.88 -0.4
943,826 - DDA3937_RS04285 0.88 -0.7
943,828 - DDA3937_RS04285 0.88 -0.8
943,828 - DDA3937_RS04285 0.88 -0.7
943,845 + -0.0
943,893 + +0.9
943,893 + -0.3
943,894 - -0.2
943,894 - -0.8
943,898 - -0.6
943,898 - -2.5
943,922 - -0.7
944,116 + DDA3937_RS04290 0.44 +0.5
944,116 + DDA3937_RS04290 0.44 -0.1
944,116 + DDA3937_RS04290 0.44 -1.7
944,117 - DDA3937_RS04290 0.44 -1.0
944,239 + DDA3937_RS04290 0.67 -0.1
944,240 - DDA3937_RS04290 0.68 +0.2
944,240 - DDA3937_RS04290 0.68 -0.9
944,254 + DDA3937_RS04290 0.70 +2.5
944,254 + DDA3937_RS04290 0.70 +3.5
944,255 - DDA3937_RS04290 0.70 +0.0
944,255 - DDA3937_RS04290 0.70 +0.4
944,454 + +1.2
944,454 + -0.2
944,455 - -2.2
944,455 - -0.4
944,455 - +0.3
944,455 - +1.0
944,455 - +0.0
944,455 - -0.6
944,455 - +2.9
944,463 + -1.2
944,463 + +0.3
944,464 - +0.0
944,464 - -1.0
944,474 - -2.6
944,479 - +0.1
944,509 + -1.1
944,534 + +0.0
944,534 + -1.1
944,534 + +1.9
944,534 + +2.0
944,535 - -1.2
944,535 - +1.3
944,535 - -0.3
944,535 - -1.2
944,567 + -0.1
944,568 - -0.3
944,570 - -0.1
944,788 + DDA3937_RS04295 0.23 -1.5
944,789 - DDA3937_RS04295 0.23 -1.9
944,801 - DDA3937_RS04295 0.23 +1.5
944,801 - DDA3937_RS04295 0.23 -0.5
944,806 + DDA3937_RS04295 0.24 +1.0
944,807 - DDA3937_RS04295 0.24 -1.2
944,807 - DDA3937_RS04295 0.24 +0.6
944,807 - DDA3937_RS04295 0.24 +0.1
944,864 + DDA3937_RS04295 0.27 +0.3
944,864 + DDA3937_RS04295 0.27 +0.9
944,864 + DDA3937_RS04295 0.27 -1.0
944,864 + DDA3937_RS04295 0.27 +0.7
944,864 + DDA3937_RS04295 0.27 -2.1
944,864 + DDA3937_RS04295 0.27 -0.7
944,865 - DDA3937_RS04295 0.27 -2.3
944,865 - DDA3937_RS04295 0.27 -0.3
944,865 - DDA3937_RS04295 0.27 -1.2
944,865 - DDA3937_RS04295 0.27 +0.4
944,897 + DDA3937_RS04295 0.29 +0.4
944,905 + DDA3937_RS04295 0.30 -0.6
944,905 + DDA3937_RS04295 0.30 -0.9
944,906 - DDA3937_RS04295 0.30 -0.9
944,906 - DDA3937_RS04295 0.30 -1.1
944,983 + DDA3937_RS04295 0.34 -1.0
944,983 + DDA3937_RS04295 0.34 -1.1
944,983 + DDA3937_RS04295 0.34 -0.8
944,984 - DDA3937_RS04295 0.34 -3.3
944,984 - DDA3937_RS04295 0.34 -0.4
944,984 - DDA3937_RS04295 0.34 +1.3
944,984 - DDA3937_RS04295 0.34 -0.2
945,003 + DDA3937_RS04295 0.36 -0.6
945,003 + DDA3937_RS04295 0.36 -0.6
945,003 + DDA3937_RS04295 0.36 +0.5
945,003 + DDA3937_RS04295 0.36 +1.2
945,054 + DDA3937_RS04295 0.39 +1.6
945,055 - DDA3937_RS04295 0.39 -0.7
945,055 - DDA3937_RS04295 0.39 -0.6
945,091 - DDA3937_RS04295 0.41 +0.8
945,236 - DDA3937_RS04295 0.50 -0.6
945,276 + DDA3937_RS04295 0.52 +0.5
945,276 + DDA3937_RS04295 0.52 -2.4
945,276 + DDA3937_RS04295 0.52 +4.6
945,277 - DDA3937_RS04295 0.52 -0.7
945,277 - DDA3937_RS04295 0.52 -0.4
945,277 - DDA3937_RS04295 0.52 -1.2
945,283 - DDA3937_RS04295 0.53 +0.3
945,321 + DDA3937_RS04295 0.55 -0.8
945,322 - DDA3937_RS04295 0.55 +0.1
945,322 - DDA3937_RS04295 0.55 -0.9
945,322 - DDA3937_RS04295 0.55 -0.6
945,322 - DDA3937_RS04295 0.55 -1.0
945,322 - DDA3937_RS04295 0.55 +3.6
945,323 + DDA3937_RS04295 0.55 -0.3

Or see this region's nucleotide sequence