Experiment: Norland
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS03370 and DDA3937_RS03375 are separated by 387 nucleotides DDA3937_RS03375 and DDA3937_RS03380 overlap by 1 nucleotides
DDA3937_RS03370: DDA3937_RS03370 - RelA/SpoT domain-containing protein, at 735,117 to 736,229
_RS03370
DDA3937_RS03375: DDA3937_RS03375 - efflux RND transporter periplasmic adaptor subunit, at 736,617 to 737,744
_RS03375
DDA3937_RS03380: DDA3937_RS03380 - efflux RND transporter permease subunit, at 737,744 to 740,824
_RS03380
Position (kb) 736
737
738 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 735.641 kb on + strand, within DDA3937_RS03370 at 735.753 kb on - strand, within DDA3937_RS03370 at 735.754 kb on + strand, within DDA3937_RS03370 at 735.755 kb on - strand, within DDA3937_RS03370 at 735.755 kb on - strand, within DDA3937_RS03370 at 735.755 kb on - strand, within DDA3937_RS03370 at 735.755 kb on - strand, within DDA3937_RS03370 at 735.825 kb on + strand, within DDA3937_RS03370 at 735.825 kb on + strand, within DDA3937_RS03370 at 735.856 kb on - strand, within DDA3937_RS03370 at 735.858 kb on + strand, within DDA3937_RS03370 at 735.859 kb on - strand, within DDA3937_RS03370 at 736.172 kb on + strand at 736.173 kb on - strand at 736.191 kb on + strand at 736.196 kb on + strand at 736.224 kb on - strand at 736.244 kb on + strand at 736.244 kb on + strand at 736.244 kb on + strand at 736.245 kb on - strand at 736.245 kb on - strand at 736.249 kb on + strand at 736.249 kb on + strand at 736.268 kb on + strand at 736.268 kb on + strand at 736.269 kb on - strand at 736.269 kb on - strand at 736.269 kb on - strand at 736.269 kb on - strand at 736.269 kb on - strand at 736.270 kb on + strand at 736.271 kb on - strand at 736.276 kb on + strand at 736.276 kb on + strand at 736.276 kb on + strand at 736.276 kb on + strand at 736.277 kb on - strand at 736.278 kb on + strand at 736.278 kb on + strand at 736.279 kb on - strand at 736.282 kb on + strand at 736.282 kb on + strand at 736.282 kb on + strand at 736.282 kb on + strand at 736.283 kb on - strand at 736.283 kb on - strand at 736.283 kb on - strand at 736.326 kb on + strand at 736.327 kb on - strand at 736.327 kb on - strand at 736.354 kb on + strand at 736.376 kb on - strand at 736.404 kb on + strand at 736.404 kb on + strand at 736.404 kb on + strand at 736.405 kb on - strand at 736.416 kb on + strand at 736.416 kb on + strand at 736.416 kb on + strand at 736.417 kb on - strand at 736.417 kb on - strand at 736.418 kb on + strand at 736.418 kb on + strand at 736.418 kb on + strand at 736.418 kb on + strand at 736.418 kb on + strand at 736.418 kb on + strand at 736.418 kb on + strand at 736.419 kb on - strand at 736.419 kb on - strand at 736.419 kb on - strand at 736.419 kb on - strand at 736.419 kb on - strand at 736.419 kb on - strand at 736.423 kb on - strand at 736.423 kb on - strand at 736.423 kb on - strand at 736.423 kb on - strand at 736.423 kb on - strand at 736.444 kb on - strand at 736.454 kb on + strand at 736.454 kb on + strand at 736.454 kb on + strand at 736.454 kb on + strand at 736.455 kb on - strand at 736.455 kb on - strand at 736.455 kb on - strand at 736.455 kb on - strand at 736.458 kb on + strand at 736.458 kb on + strand at 736.458 kb on + strand at 736.458 kb on + strand at 736.458 kb on + strand at 736.458 kb on + strand at 736.459 kb on - strand at 736.459 kb on - strand at 736.473 kb on + strand at 736.474 kb on - strand at 736.517 kb on + strand at 736.517 kb on + strand at 736.518 kb on - strand at 736.581 kb on + strand at 736.582 kb on - strand at 736.625 kb on - strand at 736.680 kb on + strand at 736.690 kb on - strand at 736.690 kb on - strand at 736.827 kb on - strand, within DDA3937_RS03375 at 736.868 kb on + strand, within DDA3937_RS03375 at 736.985 kb on + strand, within DDA3937_RS03375 at 737.034 kb on + strand at 737.034 kb on + strand, within DDA3937_RS03375 at 737.034 kb on + strand, within DDA3937_RS03375 at 737.035 kb on - strand, within DDA3937_RS03375 at 737.035 kb on - strand, within DDA3937_RS03375 at 737.035 kb on - strand, within DDA3937_RS03375 at 737.035 kb on - strand, within DDA3937_RS03375 at 737.036 kb on + strand, within DDA3937_RS03375 at 737.036 kb on + strand, within DDA3937_RS03375 at 737.082 kb on + strand, within DDA3937_RS03375 at 737.083 kb on - strand, within DDA3937_RS03375 at 737.083 kb on - strand, within DDA3937_RS03375 at 737.096 kb on + strand, within DDA3937_RS03375 at 737.097 kb on - strand, within DDA3937_RS03375 at 737.144 kb on + strand, within DDA3937_RS03375 at 737.144 kb on + strand, within DDA3937_RS03375 at 737.144 kb on + strand, within DDA3937_RS03375 at 737.155 kb on - strand, within DDA3937_RS03375 at 737.273 kb on + strand, within DDA3937_RS03375 at 737.345 kb on + strand, within DDA3937_RS03375 at 737.351 kb on + strand, within DDA3937_RS03375 at 737.352 kb on - strand, within DDA3937_RS03375 at 737.352 kb on - strand, within DDA3937_RS03375 at 737.384 kb on + strand, within DDA3937_RS03375 at 737.384 kb on + strand, within DDA3937_RS03375 at 737.385 kb on - strand, within DDA3937_RS03375 at 737.385 kb on - strand, within DDA3937_RS03375 at 737.388 kb on - strand, within DDA3937_RS03375 at 737.390 kb on + strand, within DDA3937_RS03375 at 737.390 kb on + strand, within DDA3937_RS03375 at 737.391 kb on - strand, within DDA3937_RS03375 at 737.391 kb on - strand, within DDA3937_RS03375 at 737.391 kb on - strand, within DDA3937_RS03375 at 737.451 kb on - strand, within DDA3937_RS03375 at 737.562 kb on + strand, within DDA3937_RS03375 at 737.562 kb on + strand at 737.562 kb on + strand, within DDA3937_RS03375 at 737.564 kb on + strand, within DDA3937_RS03375 at 737.564 kb on + strand, within DDA3937_RS03375 at 737.564 kb on + strand, within DDA3937_RS03375 at 737.565 kb on - strand, within DDA3937_RS03375 at 737.565 kb on - strand, within DDA3937_RS03375 at 737.568 kb on - strand, within DDA3937_RS03375 at 737.574 kb on - strand, within DDA3937_RS03375 at 737.579 kb on + strand, within DDA3937_RS03375 at 737.579 kb on + strand, within DDA3937_RS03375 at 737.648 kb on - strand at 737.672 kb on - strand at 737.684 kb on + strand at 737.699 kb on + strand at 737.700 kb on - strand at 737.793 kb on + strand at 737.793 kb on + strand at 737.793 kb on + strand at 737.866 kb on + strand at 737.867 kb on - strand at 737.935 kb on + strand at 737.936 kb on - strand at 738.061 kb on - strand, within DDA3937_RS03380 at 738.081 kb on - strand, within DDA3937_RS03380 at 738.251 kb on - strand, within DDA3937_RS03380 at 738.338 kb on - strand, within DDA3937_RS03380 at 738.338 kb on - strand, within DDA3937_RS03380 at 738.557 kb on + strand, within DDA3937_RS03380 at 738.557 kb on + strand, within DDA3937_RS03380 at 738.557 kb on + strand, within DDA3937_RS03380 at 738.558 kb on - strand, within DDA3937_RS03380 at 738.558 kb on - strand, within DDA3937_RS03380 at 738.577 kb on + strand, within DDA3937_RS03380 at 738.588 kb on + strand, within DDA3937_RS03380 at 738.588 kb on + strand, within DDA3937_RS03380 at 738.589 kb on - strand, within DDA3937_RS03380 at 738.589 kb on - strand, within DDA3937_RS03380 at 738.589 kb on - strand, within DDA3937_RS03380 at 738.687 kb on + strand, within DDA3937_RS03380
Per-strain Table
Position Strand Gene LocusTag Fraction Norland remove 735,641 + DDA3937_RS03370 0.47 -0.5 735,753 - DDA3937_RS03370 0.57 -2.2 735,754 + DDA3937_RS03370 0.57 -0.2 735,755 - DDA3937_RS03370 0.57 -0.4 735,755 - DDA3937_RS03370 0.57 -0.6 735,755 - DDA3937_RS03370 0.57 -0.3 735,755 - DDA3937_RS03370 0.57 +0.1 735,825 + DDA3937_RS03370 0.64 +0.1 735,825 + DDA3937_RS03370 0.64 +0.4 735,856 - DDA3937_RS03370 0.66 -0.6 735,858 + DDA3937_RS03370 0.67 -1.4 735,859 - DDA3937_RS03370 0.67 -0.3 736,172 + -1.2 736,173 - +2.2 736,191 + +0.0 736,196 + +0.3 736,224 - +0.0 736,244 + -0.1 736,244 + -0.7 736,244 + -0.4 736,245 - -1.1 736,245 - -3.3 736,249 + -0.8 736,249 + -0.1 736,268 + +0.9 736,268 + +0.6 736,269 - -0.8 736,269 - +0.8 736,269 - +0.4 736,269 - +1.5 736,269 - -0.8 736,270 + -1.3 736,271 - -0.4 736,276 + +1.0 736,276 + +1.3 736,276 + -2.2 736,276 + -1.9 736,277 - -0.1 736,278 + -1.7 736,278 + +0.2 736,279 - -1.1 736,282 + -1.8 736,282 + -0.4 736,282 + +0.8 736,282 + -0.2 736,283 - -0.9 736,283 - -0.9 736,283 - +0.2 736,326 + -1.6 736,327 - -0.1 736,327 - +0.1 736,354 + +0.3 736,376 - +0.7 736,404 + -1.1 736,404 + -0.2 736,404 + -0.3 736,405 - +0.4 736,416 + +0.1 736,416 + -0.9 736,416 + +1.0 736,417 - +3.0 736,417 - +1.1 736,418 + -2.2 736,418 + +0.1 736,418 + -1.2 736,418 + +0.0 736,418 + +0.3 736,418 + +5.2 736,418 + -0.3 736,419 - -1.4 736,419 - -0.2 736,419 - -1.5 736,419 - +1.3 736,419 - -0.6 736,419 - +1.1 736,423 - -0.5 736,423 - +0.6 736,423 - -1.7 736,423 - -2.8 736,423 - +2.0 736,444 - -0.7 736,454 + +0.1 736,454 + +0.1 736,454 + -1.5 736,454 + +1.0 736,455 - -1.3 736,455 - -1.1 736,455 - -0.3 736,455 - +0.8 736,458 + +0.1 736,458 + +1.3 736,458 + -1.3 736,458 + -3.2 736,458 + -1.0 736,458 + -1.9 736,459 - -1.1 736,459 - +0.5 736,473 + -0.8 736,474 - +0.1 736,517 + -0.7 736,517 + -1.6 736,518 - -0.9 736,581 + -0.4 736,582 - +0.5 736,625 - +0.1 736,680 + -1.4 736,690 - -0.1 736,690 - +0.5 736,827 - DDA3937_RS03375 0.19 -3.1 736,868 + DDA3937_RS03375 0.22 -0.7 736,985 + DDA3937_RS03375 0.33 -0.6 737,034 + +1.1 737,034 + DDA3937_RS03375 0.37 -1.1 737,034 + DDA3937_RS03375 0.37 +0.1 737,035 - DDA3937_RS03375 0.37 +2.9 737,035 - DDA3937_RS03375 0.37 -1.2 737,035 - DDA3937_RS03375 0.37 +0.2 737,035 - DDA3937_RS03375 0.37 -0.9 737,036 + DDA3937_RS03375 0.37 +0.1 737,036 + DDA3937_RS03375 0.37 +0.7 737,082 + DDA3937_RS03375 0.41 +0.4 737,083 - DDA3937_RS03375 0.41 -3.3 737,083 - DDA3937_RS03375 0.41 -0.6 737,096 + DDA3937_RS03375 0.42 -0.1 737,097 - DDA3937_RS03375 0.43 +0.0 737,144 + DDA3937_RS03375 0.47 -0.5 737,144 + DDA3937_RS03375 0.47 +0.3 737,144 + DDA3937_RS03375 0.47 -2.6 737,155 - DDA3937_RS03375 0.48 -1.6 737,273 + DDA3937_RS03375 0.58 +1.1 737,345 + DDA3937_RS03375 0.65 -1.4 737,351 + DDA3937_RS03375 0.65 -0.3 737,352 - DDA3937_RS03375 0.65 +0.7 737,352 - DDA3937_RS03375 0.65 -1.6 737,384 + DDA3937_RS03375 0.68 +1.1 737,384 + DDA3937_RS03375 0.68 -0.5 737,385 - DDA3937_RS03375 0.68 -0.8 737,385 - DDA3937_RS03375 0.68 -1.1 737,388 - DDA3937_RS03375 0.68 +0.8 737,390 + DDA3937_RS03375 0.69 -1.2 737,390 + DDA3937_RS03375 0.69 -0.6 737,391 - DDA3937_RS03375 0.69 +0.1 737,391 - DDA3937_RS03375 0.69 -3.8 737,391 - DDA3937_RS03375 0.69 -1.8 737,451 - DDA3937_RS03375 0.74 +0.1 737,562 + DDA3937_RS03375 0.84 -1.6 737,562 + +3.3 737,562 + DDA3937_RS03375 0.84 +1.0 737,564 + DDA3937_RS03375 0.84 -1.2 737,564 + DDA3937_RS03375 0.84 +0.2 737,564 + DDA3937_RS03375 0.84 -2.1 737,565 - DDA3937_RS03375 0.84 -0.3 737,565 - DDA3937_RS03375 0.84 +1.1 737,568 - DDA3937_RS03375 0.84 -1.6 737,574 - DDA3937_RS03375 0.85 +0.1 737,579 + DDA3937_RS03375 0.85 +0.5 737,579 + DDA3937_RS03375 0.85 -1.1 737,648 - +0.3 737,672 - -1.8 737,684 + -0.5 737,699 + -1.0 737,700 - -1.1 737,793 + +0.5 737,793 + -0.7 737,793 + +0.9 737,866 + -0.0 737,867 - +2.8 737,935 + -2.7 737,936 - -0.0 738,061 - DDA3937_RS03380 0.10 -1.3 738,081 - DDA3937_RS03380 0.11 -0.9 738,251 - DDA3937_RS03380 0.16 -1.5 738,338 - DDA3937_RS03380 0.19 -0.1 738,338 - DDA3937_RS03380 0.19 -0.5 738,557 + DDA3937_RS03380 0.26 -1.6 738,557 + DDA3937_RS03380 0.26 +0.1 738,557 + DDA3937_RS03380 0.26 -0.4 738,558 - DDA3937_RS03380 0.26 -0.0 738,558 - DDA3937_RS03380 0.26 -0.4 738,577 + DDA3937_RS03380 0.27 +1.5 738,588 + DDA3937_RS03380 0.27 -1.0 738,588 + DDA3937_RS03380 0.27 -0.9 738,589 - DDA3937_RS03380 0.27 -0.2 738,589 - DDA3937_RS03380 0.27 -0.4 738,589 - DDA3937_RS03380 0.27 -2.9 738,687 + DDA3937_RS03380 0.31 -1.8
Or see this region's nucleotide sequence